Wall clock time and date at job start Sat Apr 11 2020 07:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99943 * 2 1 4 4 C 1.38267 * 110.99746 * 123.95525 * 2 1 3 5 5 N 1.32429 * 119.82530 * 305.19928 * 4 2 1 6 6 C 1.31848 * 121.77626 * 180.31574 * 5 4 2 7 7 C 1.38378 * 121.21453 * 359.69582 * 6 5 4 8 8 C 1.38332 * 119.51036 * 0.02562 * 7 6 5 9 9 C 1.39977 * 118.36765 * 359.97438 * 8 7 6 10 10 C 1.47429 * 120.61213 * 180.02562 * 9 8 7 11 11 O 1.21597 * 120.00277 * 126.21823 * 10 9 8 12 12 N 1.34773 * 119.99767 * 306.22077 * 10 9 8 13 13 C 1.46606 * 119.68721 * 354.20917 * 12 10 9 14 14 C 1.53948 * 110.57458 * 227.83037 * 13 12 10 15 15 C 1.51486 * 107.35075 * 308.93370 * 14 13 12 16 16 H 1.09000 * 109.30400 * 306.31783 * 15 14 13 17 17 C 1.55368 * 107.77974 * 64.87987 * 15 14 13 18 18 H 1.08994 * 112.27658 * 50.84829 * 17 15 14 19 19 C 1.53740 * 100.21747 * 169.07038 * 17 15 14 20 20 C 1.55287 * 101.87757 * 320.88447 * 19 17 15 21 21 N 1.45475 * 117.34247 * 181.91555 * 15 14 13 22 22 C 1.36932 * 126.40338 * 30.62828 * 21 15 14 23 23 H 1.07992 * 120.00301 * 359.97438 * 22 21 15 24 24 C 1.38818 * 119.99651 * 179.97438 * 22 21 15 25 25 N 1.31622 * 120.00078 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99848 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47283 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47313 * 119.99930 * 26 24 22 29 29 H 1.48501 * 109.46822 * 239.99995 * 26 24 22 30 30 C 1.47717 * 119.68654 * 174.23313 * 12 10 9 31 31 H 1.09004 * 109.47481 * 296.04584 * 1 2 3 32 32 H 1.09002 * 109.47291 * 56.04642 * 1 2 3 33 33 H 1.09001 * 109.47483 * 176.04498 * 1 2 3 34 34 H 1.09003 * 109.46722 * 178.94930 * 3 2 1 35 35 H 1.08991 * 109.47347 * 298.95475 * 3 2 1 36 36 H 1.09008 * 109.46788 * 58.95751 * 3 2 1 37 37 H 1.07996 * 119.39548 * 179.67834 * 6 5 4 38 38 H 1.08002 * 120.24666 * 180.02562 * 7 6 5 39 39 H 1.07997 * 120.82252 * 179.97438 * 8 7 6 40 40 H 1.09007 * 109.24839 * 348.10982 * 13 12 10 41 41 H 1.08993 * 109.25462 * 107.54011 * 13 12 10 42 42 H 1.08995 * 109.88745 * 68.40306 * 14 13 12 43 43 H 1.09011 * 109.87975 * 189.48296 * 14 13 12 44 44 H 1.08996 * 110.96152 * 79.04600 * 19 17 15 45 45 H 1.09005 * 110.95514 * 202.73082 * 19 17 15 46 46 H 1.09008 * 109.91931 * 141.84731 * 20 19 17 47 47 H 1.08998 * 109.92446 * 263.14981 * 20 19 17 48 48 H 0.96993 * 119.99687 * 179.97438 * 25 24 22 49 49 H 1.08999 * 110.06746 * 8.72129 * 30 12 10 50 50 H 1.09006 * 110.06887 * 247.15116 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9645 -0.7210 1.0707 5 7 1.5822 -0.4183 2.3020 6 6 2.0349 -1.0762 3.3511 7 6 2.9299 -2.1221 3.2102 8 6 3.3596 -2.4858 1.9466 9 6 2.8668 -1.7745 0.8463 10 6 3.2911 -2.1207 -0.5225 11 8 2.4578 -2.3556 -1.3763 12 7 4.6027 -2.1767 -0.8275 13 6 5.5979 -1.7695 0.1690 14 6 6.6321 -0.8165 -0.4574 15 6 7.1471 -1.4757 -1.7204 16 1 7.5074 -2.4767 -1.4831 17 6 5.9603 -1.5831 -2.7174 18 1 5.4435 -0.6324 -2.8483 19 6 6.7131 -1.9903 -3.9945 20 6 7.9984 -1.1243 -3.8979 21 7 8.1774 -0.7724 -2.4688 22 6 9.1336 0.0594 -1.9504 23 1 9.1690 0.2450 -0.8871 24 6 10.0574 0.6642 -2.7917 25 7 10.0146 0.4377 -4.0876 26 14 11.3613 1.7996 -2.0846 27 1 11.1949 1.8880 -0.6117 28 1 12.7093 1.2621 -2.3995 29 1 11.2160 3.1520 -2.6807 30 6 5.0238 -2.6475 -2.1629 31 1 -0.3634 0.4512 0.9233 32 1 -0.3634 0.5740 -0.8524 33 1 -0.3634 -1.0252 -0.0709 34 1 3.0849 1.3423 0.0188 35 1 1.6612 1.8889 -0.8991 36 1 1.6308 1.9005 0.8806 37 1 1.7013 -0.7934 4.3385 38 1 3.2904 -2.6506 4.0804 39 1 4.0580 -3.2985 1.8122 40 1 5.0951 -1.2630 0.9929 41 1 6.1084 -2.6541 0.5495 42 1 6.1594 0.1346 -0.7020 43 1 7.4556 -0.6542 0.2381 44 1 6.9568 -3.0526 -3.9815 45 1 6.1374 -1.7355 -4.8844 46 1 8.8578 -1.6945 -4.2509 47 1 7.8812 -0.2180 -4.4919 48 1 10.6598 0.8606 -4.6754 49 1 4.1551 -2.7563 -2.8122 50 1 5.5486 -3.5989 -2.0757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036894494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:23:43 Heat of formation + Delta-G solvation = 38.587190 kcal Electronic energy + Delta-G solvation = -31604.459057 eV Core-core repulsion = 27632.315684 eV Total energy + Delta-G solvation = -3972.143373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.09977 -40.93634 -39.41937 -37.95277 -36.74059 -34.65561 -33.59085 -33.02584 -31.79772 -31.06642 -29.62482 -28.65088 -26.81091 -26.24908 -25.81415 -24.27117 -23.78535 -22.63040 -21.87884 -21.35761 -20.45930 -18.78586 -18.20209 -17.99002 -17.80161 -17.12001 -16.92860 -16.31125 -16.16030 -15.97554 -15.81040 -15.57267 -15.20555 -15.03200 -14.63607 -14.59101 -14.42060 -14.12949 -14.02200 -13.78303 -13.50771 -13.30289 -13.24440 -13.11907 -13.08241 -12.98630 -12.78488 -12.71389 -12.46793 -12.12922 -11.95863 -11.77095 -11.61051 -11.51261 -11.16154 -11.02706 -10.80720 -10.70803 -10.66494 -9.99825 -9.66684 -9.61873 -8.85654 -7.82013 -5.16194 -0.23241 0.13949 1.46517 1.47206 1.56967 1.63602 1.98563 2.51373 2.60502 2.67357 3.29746 3.37060 3.47618 3.63729 3.82713 3.86907 3.94155 3.99847 4.02868 4.11124 4.19411 4.23433 4.31188 4.34036 4.40453 4.46422 4.50496 4.53809 4.60339 4.66153 4.72997 4.79497 4.81114 4.83588 4.87369 4.91150 4.98442 5.07075 5.08505 5.10326 5.20994 5.44556 5.48330 5.55498 5.57063 5.68138 5.73528 5.78296 6.17609 6.22090 6.36886 6.81996 7.10768 7.14781 7.81144 8.50171 9.30148 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.003145 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.215084 B = 8901.731388 C = 9361.103293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.512 5.512 3 C 0.037 3.963 4 C 0.316 3.684 5 N -0.532 5.532 6 C 0.124 3.876 7 C -0.163 4.163 8 C -0.041 4.041 9 C -0.171 4.171 10 C 0.573 3.427 11 O -0.558 6.558 12 N -0.604 5.604 13 C 0.123 3.877 14 C -0.122 4.122 15 C 0.160 3.840 16 H 0.029 0.971 17 C -0.108 4.108 18 H 0.055 0.945 19 C -0.122 4.122 20 C 0.183 3.817 21 N -0.617 5.617 22 C -0.227 4.227 23 H 0.088 0.912 24 C -0.071 4.071 25 N -0.954 5.954 26 Si 0.973 3.027 27 H -0.262 1.262 28 H -0.294 1.294 29 H -0.298 1.298 30 C 0.137 3.863 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.192 0.808 38 H 0.184 0.816 39 H 0.165 0.835 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.006 0.994 47 H 0.014 0.986 48 H 0.244 0.756 49 H 0.085 0.915 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.639 -6.710 16.748 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.235 5.235 3 C -0.109 4.109 4 C 0.088 3.912 5 N -0.245 5.245 6 C -0.035 4.035 7 C -0.182 4.182 8 C -0.067 4.067 9 C -0.178 4.178 10 C 0.361 3.639 11 O -0.436 6.436 12 N -0.336 5.336 13 C 0.000 4.000 14 C -0.161 4.161 15 C 0.054 3.946 16 H 0.047 0.953 17 C -0.129 4.129 18 H 0.074 0.926 19 C -0.160 4.160 20 C 0.058 3.942 21 N -0.341 5.341 22 C -0.356 4.356 23 H 0.106 0.894 24 C -0.263 4.263 25 N -0.604 5.604 26 Si 0.802 3.198 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.225 1.225 30 C 0.015 3.985 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.209 0.791 38 H 0.202 0.798 39 H 0.183 0.817 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.024 0.976 47 H 0.032 0.968 48 H 0.053 0.947 49 H 0.104 0.896 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.329 -6.240 15.906 24.336 hybrid contribution 1.381 0.821 -0.006 1.607 sum -15.948 -5.419 15.900 23.162 Atomic orbital electron populations 1.22277 0.84084 1.02258 1.01905 1.59834 1.10780 1.15367 1.37550 1.22345 0.99803 0.86507 1.02277 1.19776 0.91549 0.91973 0.87893 1.67840 1.26606 1.30489 0.99564 1.23427 0.91758 0.90647 0.97703 1.22498 0.98418 0.98724 0.98559 1.22081 0.96113 0.97480 0.91040 1.20631 1.02395 1.00201 0.94559 1.18157 0.81987 0.76182 0.87551 1.90738 1.52316 1.50582 1.49954 1.48243 1.05372 1.64616 1.15396 1.21847 0.89198 0.98967 0.89998 1.21784 0.98255 0.98305 0.97727 1.20853 0.87459 0.94351 0.91980 0.95326 1.22433 0.95627 0.98478 0.96319 0.92624 1.22587 0.96036 1.00150 0.97247 1.21301 0.92954 0.94949 0.84975 1.44549 1.32736 1.53497 1.03351 1.19446 1.05119 1.18336 0.92708 0.89429 1.25614 1.01996 1.02745 0.95962 1.70176 1.38675 1.48415 1.03138 0.85080 0.78659 0.77917 0.78164 1.18588 1.22173 1.22511 1.21500 0.98045 0.96256 0.82692 0.93555 0.89719 0.92402 0.92742 0.89649 0.93629 0.79148 0.79838 0.81743 0.89035 0.88711 0.93646 0.90476 0.89984 0.90718 0.97599 0.96791 0.94678 0.89648 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.95 9.39 127.69 1.20 2.14 16 2 N -0.51 -13.83 4.09 -751.05 -3.07 -16.89 16 3 C 0.04 0.89 9.47 127.69 1.21 2.10 16 4 C 0.32 8.05 5.33 133.64 0.71 8.76 16 5 N -0.53 -11.50 9.57 -192.51 -1.84 -13.34 16 6 C 0.12 1.70 11.16 84.72 0.95 2.64 16 7 C -0.16 -1.72 10.09 22.33 0.23 -1.49 16 8 C -0.04 -0.64 7.99 22.71 0.18 -0.45 16 9 C -0.17 -4.14 4.52 -19.88 -0.09 -4.23 16 10 C 0.57 16.97 6.79 86.66 0.59 17.56 16 11 O -0.56 -20.51 16.07 -4.02 -0.06 -20.57 16 12 N -0.60 -16.43 3.00 -821.90 -2.47 -18.90 16 13 C 0.12 2.86 5.34 86.68 0.46 3.33 16 14 C -0.12 -3.91 5.48 30.42 0.17 -3.74 16 15 C 0.16 6.14 2.55 45.50 0.12 6.26 16 16 H 0.03 1.09 7.94 -2.39 -0.02 1.07 16 17 C -0.11 -3.80 2.86 -9.98 -0.03 -3.83 16 18 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 19 C -0.12 -4.47 6.53 31.63 0.21 -4.26 16 20 C 0.18 9.09 5.45 86.83 0.47 9.57 16 21 N -0.62 -30.90 3.35 -669.69 -2.25 -33.15 16 22 C -0.23 -12.35 9.88 84.04 0.83 -11.52 16 23 H 0.09 4.47 7.21 -2.91 -0.02 4.45 16 24 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 25 N -0.95 -57.86 10.44 21.65 0.23 -57.63 16 26 Si 0.97 45.52 29.55 68.60 2.03 47.54 16 27 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 30 C 0.14 3.94 5.97 85.89 0.51 4.46 16 31 H 0.05 0.98 7.74 -2.39 -0.02 0.97 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.42 8.11 -2.39 -0.02 1.41 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.01 8.12 -2.38 -0.02 0.99 16 37 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 39 H 0.17 1.79 7.77 -2.91 -0.02 1.77 16 40 H 0.09 1.89 5.52 -2.38 -0.01 1.87 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 43 H 0.08 2.45 7.62 -2.38 -0.02 2.44 16 44 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 45 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 46 H 0.01 0.32 7.77 -2.38 -0.02 0.30 16 47 H 0.01 0.79 7.22 -2.39 -0.02 0.77 16 48 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 49 H 0.09 2.62 6.98 -2.39 -0.02 2.60 16 50 H 0.09 2.26 8.08 -2.38 -0.02 2.24 16 Total: -1.00 -76.23 391.27 1.67 -74.56 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.92 Total: 14.63 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 8.18 Total: 23.75 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -9.40 Total: -139.91 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.06 Total: -20.57 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -76.23 1.67 -74.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036894494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.147 kcal (2) G-P(sol) polarization free energy of solvation -76.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds