Wall clock time and date at job start Sat Apr 11 2020 07:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.90309 * 2 1 4 4 N 1.40080 * 108.20867 * 179.81600 * 3 2 1 5 5 C 1.46508 * 126.03855 * 180.23079 * 4 3 2 6 6 F 1.39898 * 109.46691 * 30.15545 * 5 4 3 7 7 F 1.39897 * 109.46663 * 150.15068 * 5 4 3 8 8 C 1.34946 * 107.92639 * 0.36494 * 4 3 2 9 9 C 1.50703 * 126.12821 * 179.90663 * 8 4 3 10 10 C 1.35310 * 107.74594 * 359.64128 * 8 4 3 11 11 C 1.50706 * 126.04281 * 180.25420 * 10 8 4 12 12 C 1.50689 * 109.47334 * 89.99685 * 11 10 8 13 13 O 1.20826 * 120.00140 * 359.97438 * 12 11 10 14 14 O 1.34232 * 120.00044 * 180.02562 * 12 11 10 15 15 C 1.45202 * 117.00298 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47114 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00183 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99981 * 179.97438 * 16 15 14 19 19 C 1.46504 * 120.00314 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47278 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00109 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99901 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99974 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00027 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47063 * 90.00069 * 24 22 20 26 26 H 1.48503 * 109.47085 * 209.99925 * 24 22 20 27 27 H 1.48497 * 109.47341 * 330.00284 * 24 22 20 28 28 H 1.09003 * 109.46956 * 269.95831 * 1 2 3 29 29 H 1.08999 * 109.47037 * 29.95728 * 1 2 3 30 30 H 1.09003 * 109.47071 * 149.95864 * 1 2 3 31 31 H 1.08997 * 109.47057 * 270.15446 * 5 4 3 32 32 H 1.09002 * 109.47152 * 269.68605 * 9 8 4 33 33 H 1.09001 * 109.46980 * 149.68706 * 9 8 4 34 34 H 1.09004 * 109.47113 * 29.68687 * 9 8 4 35 35 H 1.08997 * 109.46991 * 209.99910 * 11 10 8 36 36 H 1.08996 * 109.46546 * 329.99206 * 11 10 8 37 37 H 1.08999 * 109.46850 * 300.00018 * 15 14 12 38 38 H 1.09000 * 109.47070 * 59.99210 * 15 14 12 39 39 H 0.97004 * 119.99809 * 0.02562 * 18 16 15 40 40 H 1.08998 * 109.46737 * 300.00008 * 19 18 16 41 41 H 1.09002 * 109.46800 * 60.00009 * 19 18 16 42 42 H 0.96993 * 120.00118 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0043 5 6 4.7899 1.5007 0.0105 6 9 4.4886 2.6947 0.6743 7 9 5.8401 0.8528 0.6697 8 6 3.6142 -0.7154 -0.0013 9 6 4.8350 -1.5990 -0.0015 10 6 2.3272 -1.1331 -0.0009 11 6 1.8599 -2.5659 -0.0006 12 6 1.7047 -3.0434 1.4202 13 8 1.9490 -2.2971 2.3385 14 8 1.2961 -4.2982 1.6656 15 6 1.1684 -4.6895 3.0581 16 6 0.7031 -6.1206 3.1371 17 8 0.4987 -6.7488 2.1200 18 7 0.5140 -6.7024 4.3380 19 6 0.0611 -8.0936 4.4149 20 6 -0.0701 -8.5000 5.8601 21 1 0.1612 -7.7930 6.6431 22 6 -0.4844 -9.7749 6.1828 23 7 -0.5994 -10.1295 7.4440 24 14 -0.8837 -10.9980 4.8286 25 1 0.3419 -11.7552 4.4683 26 1 -1.9263 -11.9418 5.3056 27 1 -1.3841 -10.2695 3.6353 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 5.0852 1.7199 -1.0156 32 1 5.1291 -1.8123 -1.0292 33 1 4.6077 -2.5329 0.5126 34 1 5.6513 -1.0909 0.5120 35 1 0.9009 -2.6353 -0.5141 36 1 2.5931 -3.1871 -0.5148 37 1 2.1352 -4.5943 3.5523 38 1 0.4428 -4.0432 3.5520 39 1 0.6771 -6.1998 5.1515 40 1 -0.9059 -8.1886 3.9211 41 1 0.7866 -8.7397 3.9205 42 1 -0.8904 -11.0264 7.6710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065688109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:19 Heat of formation + Delta-G solvation = -164.934631 kcal Electronic energy + Delta-G solvation = -29368.031590 eV Core-core repulsion = 24599.281562 eV Total energy + Delta-G solvation = -4768.750028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.42508 -48.55865 -42.63324 -41.53135 -40.35084 -37.53615 -36.18007 -35.07701 -34.45172 -34.23374 -31.39433 -30.52902 -30.03262 -28.77795 -27.29323 -25.70398 -24.16154 -22.56633 -21.69372 -21.19689 -20.77942 -19.36071 -19.20073 -18.80683 -18.77977 -18.26603 -18.00308 -17.81368 -17.07377 -16.78493 -16.31223 -16.15559 -15.73039 -15.66683 -15.36253 -15.18405 -14.94952 -14.78126 -14.63837 -14.40011 -14.30411 -14.23783 -14.11283 -13.73017 -13.61062 -13.57771 -13.17736 -13.07071 -13.05591 -12.85747 -12.69118 -12.61150 -11.92038 -11.85712 -11.68324 -11.66859 -11.63762 -10.94529 -10.91325 -10.39762 -10.02234 -9.63250 -8.39097 -6.46942 0.43320 0.86534 1.15757 1.18113 1.35255 1.37824 1.49561 1.54144 1.70790 2.29447 2.49136 2.59404 2.84476 2.96260 3.43020 3.51395 3.66020 3.70506 3.75199 3.97414 4.05396 4.09524 4.10481 4.21516 4.49616 4.60426 4.62605 4.76316 4.76705 4.91210 4.92138 4.94523 5.02179 5.05872 5.23994 5.32931 5.41981 5.49427 5.66602 6.06514 6.45596 6.52982 6.66479 6.76629 7.12638 7.28404 8.75470 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.023910 B = 0.001817 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.791482 B =15402.505745 C =15715.621657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.100 3.900 3 N -0.313 5.313 4 N -0.447 5.447 5 C 0.507 3.493 6 F -0.190 7.190 7 F -0.182 7.182 8 C 0.121 3.879 9 C -0.112 4.112 10 C -0.236 4.236 11 C -0.025 4.025 12 C 0.462 3.538 13 O -0.530 6.530 14 O -0.343 6.343 15 C 0.058 3.942 16 C 0.506 3.494 17 O -0.575 6.575 18 N -0.699 5.699 19 C 0.233 3.767 20 C -0.549 4.549 21 H 0.060 0.940 22 C 0.025 3.975 23 N -0.931 5.931 24 Si 0.939 3.061 25 H -0.264 1.264 26 H -0.275 1.275 27 H -0.257 1.257 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.204 0.796 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.412 0.588 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.079 23.750 -21.680 34.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 N -0.133 5.133 4 N -0.239 5.239 5 C 0.374 3.626 6 F -0.172 7.172 7 F -0.164 7.164 8 C -0.003 4.003 9 C -0.170 4.170 10 C -0.246 4.246 11 C -0.063 4.063 12 C 0.306 3.694 13 O -0.419 6.419 14 O -0.259 6.259 15 C -0.019 4.019 16 C 0.292 3.708 17 O -0.455 6.455 18 N -0.350 5.350 19 C 0.109 3.891 20 C -0.587 4.587 21 H 0.078 0.922 22 C -0.176 4.176 23 N -0.570 5.570 24 Si 0.762 3.238 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.181 1.181 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.220 0.780 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.248 0.752 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.184 24.763 -21.921 34.912 hybrid contribution -0.133 -1.135 1.085 1.576 sum 11.052 23.628 -20.836 33.385 Atomic orbital electron populations 1.20409 0.84513 1.05210 1.03695 1.22851 0.98305 0.89923 0.95762 1.77396 0.85474 1.23035 1.27419 1.49848 1.06407 1.05634 1.61995 1.22080 0.73092 0.72331 0.95087 1.93092 1.93075 1.46693 1.84292 1.93045 1.56730 1.81811 1.84779 1.21360 0.98258 0.83625 0.97052 1.20978 0.92101 0.98052 1.05894 1.19307 0.91480 0.95093 1.18760 1.19672 1.07335 0.90992 0.88307 1.24541 0.72197 0.78492 0.94135 1.90685 1.47348 1.56042 1.47844 1.86563 1.78471 1.32102 1.28769 1.22653 1.05199 0.92339 0.81660 1.20561 0.77895 0.88819 0.83554 1.90674 1.52859 1.66200 1.35789 1.45889 1.66675 1.14610 1.07865 1.19170 0.94442 0.79436 0.96026 1.21284 1.47133 0.99156 0.91091 0.92218 1.25632 0.94223 0.99977 0.97748 1.69984 1.47470 1.20873 1.18674 0.85832 0.79095 0.79109 0.79720 1.18902 1.20009 1.18104 0.90503 0.89626 0.87821 0.77972 0.86527 0.89461 0.89179 0.84081 0.84128 0.86377 0.86405 0.75222 0.96386 0.96478 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.26 71.23 0.73 -0.38 16 2 C 0.10 1.97 7.22 43.10 0.31 2.29 16 3 N -0.31 -7.11 12.41 -47.38 -0.59 -7.70 16 4 N -0.45 -8.20 3.97 -351.30 -1.40 -9.60 16 5 C 0.51 6.09 6.57 127.77 0.84 6.93 16 6 F -0.19 -3.38 17.36 44.97 0.78 -2.60 16 7 F -0.18 -2.32 14.49 44.97 0.65 -1.67 16 8 C 0.12 2.02 6.83 41.40 0.28 2.30 16 9 C -0.11 -1.14 9.63 71.24 0.69 -0.46 16 10 C -0.24 -4.18 4.59 -20.14 -0.09 -4.28 16 11 C -0.03 -0.36 5.72 29.10 0.17 -0.19 16 12 C 0.46 10.30 7.95 71.23 0.57 10.87 16 13 O -0.53 -14.90 15.78 21.96 0.35 -14.55 16 14 O -0.34 -8.99 9.75 -45.08 -0.44 -9.43 16 15 C 0.06 1.54 5.94 71.23 0.42 1.96 16 16 C 0.51 18.11 7.91 87.65 0.69 18.80 16 17 O -0.58 -25.20 16.50 15.78 0.26 -24.94 16 18 N -0.70 -26.66 5.55 -466.79 -2.59 -29.25 16 19 C 0.23 11.00 4.50 85.63 0.38 11.39 16 20 C -0.55 -29.62 9.83 25.60 0.25 -29.37 16 21 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 22 C 0.02 1.36 5.47 84.65 0.46 1.83 16 23 N -0.93 -55.00 13.96 21.45 0.30 -54.70 16 24 Si 0.94 43.01 27.47 68.60 1.88 44.90 16 25 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.26 -11.55 6.54 99.48 0.65 -10.90 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 0.94 7.26 -2.39 -0.02 0.92 16 31 H 0.20 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.95 7.78 -2.39 -0.02 0.93 16 34 H 0.09 0.94 5.58 -2.38 -0.01 0.93 16 35 H 0.14 1.35 7.26 -2.39 -0.02 1.33 16 36 H 0.14 1.27 7.77 -2.39 -0.02 1.25 16 37 H 0.12 2.66 8.13 -2.39 -0.02 2.64 16 38 H 0.12 2.68 8.13 -2.39 -0.02 2.66 16 39 H 0.41 13.55 8.32 -92.71 -0.77 12.78 16 40 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 41 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 42 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -80.67 374.14 5.18 -75.49 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.26 Total: 12.36 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 5.71 Total: 21.70 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -4.27 Total: -101.26 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: 0.17 Total: -48.93 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 1.43 Total: -4.26 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.90 kcal Total: -80.67 5.18 -75.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065688109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.440 kcal (2) G-P(sol) polarization free energy of solvation -80.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds