Wall clock time and date at job start Sat Apr 11 2020 07:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 N 1.46494 * 109.47263 * 180.02562 * 3 2 1 5 5 C 1.36835 * 120.00221 * 264.07680 * 4 3 2 6 6 H 1.08002 * 120.00310 * 136.07882 * 5 4 3 7 7 C 1.39068 * 119.99565 * 316.08682 * 5 4 3 8 8 N 1.31350 * 119.99838 * 169.16659 * 7 5 4 9 9 Si 1.86798 * 120.00142 * 349.15595 * 7 5 4 10 10 H 1.48505 * 109.46646 * 91.54315 * 9 7 5 11 11 H 1.48493 * 109.47424 * 211.54160 * 9 7 5 12 12 H 1.48493 * 109.47508 * 331.54582 * 9 7 5 13 13 C 1.34783 * 120.00206 * 84.34965 * 4 3 2 14 14 O 1.21603 * 119.99665 * 4.77824 * 13 4 3 15 15 C 1.47710 * 120.00167 * 184.77656 * 13 4 3 16 16 C 1.41576 * 119.90512 * 174.54133 * 15 13 4 17 17 C 1.36376 * 118.23006 * 179.97438 * 16 15 13 18 18 C 1.41184 * 117.95992 * 0.02562 * 17 16 15 19 19 O 1.21988 * 120.21567 * 180.02562 * 18 17 16 20 20 N 1.34605 * 119.57733 * 359.97438 * 18 17 16 21 21 C 1.39878 * 119.09214 * 180.02562 * 20 18 17 22 22 C 1.38900 * 120.08862 * 85.00151 * 21 20 18 23 23 C 1.38096 * 119.95092 * 179.97438 * 22 21 20 24 24 C 1.38330 * 120.12292 * 0.02562 * 23 22 21 25 25 C 1.38250 * 120.17248 * 0.02562 * 24 23 22 26 26 C 1.38327 * 120.05332 * 359.70093 * 25 24 23 27 27 F 1.35098 * 120.06537 * 180.29491 * 26 25 24 28 28 N 1.28384 * 121.81630 * 359.73536 * 20 18 17 29 29 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47027 * 299.99637 * 1 2 3 31 31 H 1.08995 * 109.47207 * 59.99857 * 1 2 3 32 32 H 1.09000 * 109.47027 * 240.00363 * 2 1 3 33 33 H 1.08995 * 109.47207 * 120.00143 * 2 1 3 34 34 H 1.09000 * 109.46847 * 60.00252 * 3 2 1 35 35 H 1.08999 * 109.46897 * 300.00565 * 3 2 1 36 36 H 0.97002 * 120.00201 * 179.97438 * 8 7 5 37 37 H 1.07992 * 120.88597 * 0.02562 * 16 15 13 38 38 H 1.07999 * 121.02188 * 180.02562 * 17 16 15 39 39 H 1.08003 * 120.02808 * 359.97438 * 22 21 20 40 40 H 1.07995 * 119.93700 * 179.97438 * 23 22 21 41 41 H 1.07994 * 119.91009 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.97070 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 1.5646 1.1778 6 1 5.0433 0.9328 1.3744 7 6 3.7863 2.5023 2.1223 8 7 4.3001 2.4798 3.3310 9 14 2.5142 3.7939 1.6721 10 1 1.1577 3.2898 2.0056 11 1 2.7812 5.0390 2.4358 12 1 2.5921 4.0794 0.2169 13 6 4.1785 1.3278 -1.1625 14 8 3.5732 1.3117 -2.2170 15 6 5.6517 1.2216 -1.1548 16 6 6.3487 0.9852 -2.3643 17 6 7.7086 0.8938 -2.3179 18 6 8.3394 1.0402 -1.0634 19 8 9.5538 0.9663 -0.9746 20 7 7.5925 1.2630 0.0340 21 6 8.2281 1.4072 1.2716 22 6 8.7231 2.6454 1.6603 23 6 9.3497 2.7846 2.8830 24 6 9.4858 1.6929 3.7215 25 6 8.9960 0.4578 3.3394 26 6 8.3621 0.3115 2.1187 27 9 7.8780 -0.8940 1.7476 28 7 6.3131 1.3524 -0.0248 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 4.0191 3.1340 3.9897 37 1 5.8176 0.8809 -3.2988 38 1 8.2852 0.7148 -3.2133 39 1 8.6181 3.4988 1.0067 40 1 9.7348 3.7473 3.1847 41 1 9.9768 1.8055 4.6768 42 1 9.1044 -0.3924 3.9965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125764526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:42 Heat of formation + Delta-G solvation = 13.347778 kcal Electronic energy + Delta-G solvation = -31167.256153 eV Core-core repulsion = 26837.006255 eV Total energy + Delta-G solvation = -4330.249898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.71193 -41.86251 -39.18387 -38.49118 -37.22013 -35.60606 -34.39840 -33.16263 -31.89716 -31.12237 -30.54995 -29.61336 -26.35651 -25.55793 -24.82463 -23.85644 -22.77959 -22.18058 -21.37479 -19.99858 -18.61804 -18.11321 -17.44492 -16.81707 -16.75382 -16.34422 -15.94862 -15.38515 -15.27423 -15.18317 -14.84988 -14.45191 -14.37271 -14.04364 -13.92200 -13.41058 -13.22963 -13.12413 -12.97964 -12.72219 -12.43154 -12.29363 -12.16835 -11.93676 -11.75797 -11.60831 -11.28987 -11.22972 -11.04679 -10.96525 -10.39957 -10.19669 -10.07392 -9.87278 -9.43794 -9.29324 -9.03633 -8.76213 -8.56345 -8.19500 -7.82395 -6.53615 -4.17710 0.88437 1.12175 1.31173 1.69113 2.50283 2.96587 3.12666 3.19042 3.38218 3.59922 3.98641 4.04620 4.14999 4.31120 4.67373 4.81906 4.91085 4.98224 5.07336 5.15794 5.27201 5.36492 5.39136 5.46512 5.52348 5.57527 5.78610 5.93252 6.01466 6.06353 6.10143 6.13735 6.19892 6.24503 6.25047 6.31918 6.34953 6.40835 6.48588 6.64827 6.77558 6.95486 7.25504 7.90547 7.92638 8.31935 8.51186 8.82719 9.15155 9.45487 10.52719 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.005121 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.231087 B = 5465.970119 C = 6709.877962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.098 3.902 4 N -0.436 5.436 5 C -0.314 4.314 6 H 0.133 0.867 7 C 0.069 3.931 8 N -0.846 5.846 9 Si 0.876 3.124 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.260 1.260 13 C 0.532 3.468 14 O -0.592 6.592 15 C 0.023 3.977 16 C -0.016 4.016 17 C -0.217 4.217 18 C 0.480 3.520 19 O -0.538 6.538 20 N -0.310 5.310 21 C 0.108 3.892 22 C -0.058 4.058 23 C -0.122 4.122 24 C -0.076 4.076 25 C -0.147 4.147 26 C 0.134 3.866 27 F -0.130 7.130 28 N -0.127 5.127 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.277 0.723 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 -0.737 -0.221 4.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.025 4.025 4 N -0.154 5.154 5 C -0.445 4.445 6 H 0.150 0.850 7 C -0.140 4.140 8 N -0.481 5.481 9 Si 0.704 3.296 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.184 1.184 13 C 0.321 3.679 14 O -0.476 6.476 15 C -0.146 4.146 16 C -0.040 4.040 17 C -0.246 4.246 18 C 0.280 3.720 19 O -0.417 6.417 20 N -0.126 5.126 21 C 0.019 3.981 22 C -0.077 4.077 23 C -0.141 4.141 24 C -0.094 4.094 25 C -0.167 4.167 26 C 0.113 3.887 27 F -0.109 7.109 28 N 0.047 4.953 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.175 0.825 38 H 0.180 0.820 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.903 -0.615 0.354 4.954 hybrid contribution -0.650 0.412 -0.822 1.126 sum 4.253 -0.203 -0.468 4.284 Atomic orbital electron populations 1.21703 0.96051 1.01250 1.01510 1.21771 0.95109 0.97438 1.02715 1.21818 0.81862 0.97179 1.01625 1.43745 1.04370 1.61004 1.06315 1.19770 1.13899 1.19411 0.91408 0.85040 1.25431 0.96979 0.96651 0.94914 1.69628 1.41294 1.34517 1.02706 0.86957 0.81224 0.81381 0.80024 1.19778 1.21397 1.18434 1.17358 0.83836 0.82729 0.83994 1.90669 1.67911 1.58184 1.30872 1.21966 0.96182 1.07729 0.88735 1.22315 0.93789 0.88527 0.99395 1.22442 0.95060 1.09529 0.97550 1.18242 0.88433 0.79745 0.85566 1.90908 1.12635 1.52284 1.85867 1.44341 1.04024 1.56843 1.07386 1.17258 1.01253 0.94100 0.85514 1.21029 0.95051 0.94926 0.96728 1.21000 1.00121 0.99490 0.93469 1.21063 0.97394 0.91526 0.99408 1.21002 1.00947 0.99821 0.94887 1.17715 0.96959 0.80016 0.94055 1.91512 1.85686 1.42101 1.91558 1.73203 0.91017 1.05489 1.25606 0.92868 0.92933 0.92874 0.91723 0.91222 0.91116 0.91008 0.91282 0.82508 0.82041 0.84925 0.84646 0.84549 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.13 -2.37 6.22 -26.73 -0.17 -2.54 16 3 C 0.10 2.03 3.81 -4.04 -0.02 2.01 16 4 N -0.44 -10.10 2.13 -115.94 -0.25 -10.35 16 5 C -0.31 -7.82 8.18 -15.01 -0.12 -7.94 16 6 H 0.13 3.53 5.93 -52.49 -0.31 3.22 16 7 C 0.07 1.73 5.41 -17.45 -0.09 1.64 16 8 N -0.85 -21.91 13.95 55.50 0.77 -21.14 16 9 Si 0.88 19.55 24.73 -169.99 -4.20 15.34 16 10 H -0.27 -5.73 6.70 56.52 0.38 -5.36 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.26 -5.93 7.04 56.52 0.40 -5.54 16 13 C 0.53 12.08 7.57 -12.39 -0.09 11.99 16 14 O -0.59 -13.77 16.04 5.28 0.08 -13.69 16 15 C 0.02 0.47 6.75 -82.83 -0.56 -0.09 16 16 C -0.02 -0.28 9.68 -38.98 -0.38 -0.66 16 17 C -0.22 -3.58 10.11 -39.13 -0.40 -3.98 16 18 C 0.48 9.47 7.43 -15.22 -0.11 9.36 16 19 O -0.54 -11.50 17.04 4.93 0.08 -11.42 16 20 N -0.31 -6.37 3.08 -12.51 -0.04 -6.40 16 21 C 0.11 2.09 4.64 -83.61 -0.39 1.71 16 22 C -0.06 -0.96 9.97 -39.39 -0.39 -1.36 16 23 C -0.12 -1.63 10.04 -39.60 -0.40 -2.03 16 24 C -0.08 -0.95 10.04 -39.54 -0.40 -1.35 16 25 C -0.15 -2.16 10.02 -39.54 -0.40 -2.55 16 26 C 0.13 2.48 7.32 -39.22 -0.29 2.19 16 27 F -0.13 -2.59 17.08 2.25 0.04 -2.55 16 28 N -0.13 -2.77 6.80 33.40 0.23 -2.54 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.50 3.52 -51.93 -0.18 1.31 16 35 H 0.07 1.48 7.53 -51.93 -0.39 1.08 16 36 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.16 2.32 7.73 -52.49 -0.41 1.91 16 38 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 40 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -30.48 362.80 -6.32 -36.80 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.68 Total: 5.85 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -3.83 Total: 4.63 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.72 Total: -40.43 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: 0.17 Total: -25.11 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.20 Total: 15.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.48 -6.32 -36.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125764526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.151 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds