Wall clock time and date at job start Sat Apr 11 2020 07:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 N 1.46494 * 109.47263 * 180.02562 * 3 2 1 5 5 C 1.36835 * 120.00221 * 264.07680 * 4 3 2 6 6 H 1.08002 * 120.00310 * 136.07882 * 5 4 3 7 7 C 1.39068 * 119.99565 * 316.08682 * 5 4 3 8 8 N 1.31350 * 119.99838 * 169.16659 * 7 5 4 9 9 Si 1.86798 * 120.00142 * 349.15595 * 7 5 4 10 10 H 1.48505 * 109.46646 * 91.54315 * 9 7 5 11 11 H 1.48493 * 109.47424 * 211.54160 * 9 7 5 12 12 H 1.48493 * 109.47508 * 331.54582 * 9 7 5 13 13 C 1.34783 * 120.00206 * 84.34965 * 4 3 2 14 14 O 1.21603 * 119.99665 * 4.77824 * 13 4 3 15 15 C 1.47710 * 120.00167 * 184.77656 * 13 4 3 16 16 C 1.41576 * 119.90512 * 174.54133 * 15 13 4 17 17 C 1.36376 * 118.23006 * 179.97438 * 16 15 13 18 18 C 1.41184 * 117.95992 * 0.02562 * 17 16 15 19 19 O 1.21988 * 120.21567 * 180.02562 * 18 17 16 20 20 N 1.34605 * 119.57733 * 359.97438 * 18 17 16 21 21 C 1.39878 * 119.09214 * 180.02562 * 20 18 17 22 22 C 1.38900 * 120.08862 * 85.00151 * 21 20 18 23 23 C 1.38096 * 119.95092 * 179.97438 * 22 21 20 24 24 C 1.38330 * 120.12292 * 0.02562 * 23 22 21 25 25 C 1.38250 * 120.17248 * 0.02562 * 24 23 22 26 26 C 1.38327 * 120.05332 * 359.70093 * 25 24 23 27 27 F 1.35098 * 120.06537 * 180.29491 * 26 25 24 28 28 N 1.28384 * 121.81630 * 359.73536 * 20 18 17 29 29 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47027 * 299.99637 * 1 2 3 31 31 H 1.08995 * 109.47207 * 59.99857 * 1 2 3 32 32 H 1.09000 * 109.47027 * 240.00363 * 2 1 3 33 33 H 1.08995 * 109.47207 * 120.00143 * 2 1 3 34 34 H 1.09000 * 109.46847 * 60.00252 * 3 2 1 35 35 H 1.08999 * 109.46897 * 300.00565 * 3 2 1 36 36 H 0.97002 * 120.00201 * 179.97438 * 8 7 5 37 37 H 1.07992 * 120.88597 * 0.02562 * 16 15 13 38 38 H 1.07999 * 121.02188 * 180.02562 * 17 16 15 39 39 H 1.08003 * 120.02808 * 359.97438 * 22 21 20 40 40 H 1.07995 * 119.93700 * 179.97438 * 23 22 21 41 41 H 1.07994 * 119.91009 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.97070 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 1.5646 1.1778 6 1 5.0433 0.9328 1.3744 7 6 3.7863 2.5023 2.1223 8 7 4.3001 2.4798 3.3310 9 14 2.5142 3.7939 1.6721 10 1 1.1577 3.2898 2.0056 11 1 2.7812 5.0390 2.4358 12 1 2.5921 4.0794 0.2169 13 6 4.1785 1.3278 -1.1625 14 8 3.5732 1.3117 -2.2170 15 6 5.6517 1.2216 -1.1548 16 6 6.3487 0.9852 -2.3643 17 6 7.7086 0.8938 -2.3179 18 6 8.3394 1.0402 -1.0634 19 8 9.5538 0.9663 -0.9746 20 7 7.5925 1.2630 0.0340 21 6 8.2281 1.4072 1.2716 22 6 8.7231 2.6454 1.6603 23 6 9.3497 2.7846 2.8830 24 6 9.4858 1.6929 3.7215 25 6 8.9960 0.4578 3.3394 26 6 8.3621 0.3115 2.1187 27 9 7.8780 -0.8940 1.7476 28 7 6.3131 1.3524 -0.0248 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 4.0191 3.1340 3.9897 37 1 5.8176 0.8809 -3.2988 38 1 8.2852 0.7148 -3.2133 39 1 8.6181 3.4988 1.0067 40 1 9.7348 3.7473 3.1847 41 1 9.9768 1.8055 4.6768 42 1 9.1044 -0.3924 3.9965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125764526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:41 Heat of formation + Delta-G solvation = -4.079340 kcal Electronic energy + Delta-G solvation = -31168.011850 eV Core-core repulsion = 26837.006255 eV Total energy + Delta-G solvation = -4331.005595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.14186 -43.39806 -40.88523 -39.75745 -38.83211 -37.32636 -35.86014 -34.74884 -33.64848 -32.58963 -31.77317 -30.96881 -27.86886 -27.27556 -26.38911 -25.39117 -24.02063 -23.51239 -22.81022 -21.68829 -20.19797 -19.73864 -18.89599 -18.27421 -18.17350 -17.95212 -17.50997 -17.01592 -16.74035 -16.72471 -16.31796 -16.00232 -15.76599 -15.67676 -15.15422 -14.95747 -14.70590 -14.49531 -14.47971 -14.38245 -14.07842 -13.84413 -13.40536 -13.35251 -13.22637 -13.02610 -12.78747 -12.57208 -12.50951 -12.46222 -11.93508 -11.86455 -11.57434 -11.50722 -11.21748 -10.95133 -10.59083 -10.15233 -9.84358 -9.78597 -9.59503 -8.41810 -6.10934 -0.56183 -0.11954 0.08491 0.11119 1.03638 1.19937 1.31627 1.39740 1.75770 2.17423 2.33882 2.45566 2.49772 2.94919 3.04583 3.25861 3.63887 3.65866 3.74850 3.83884 3.93468 4.00639 4.13680 4.18388 4.21491 4.23382 4.38706 4.54015 4.56789 4.66408 4.82922 4.85391 4.89057 4.93505 4.96247 5.04295 5.12788 5.18287 5.24132 5.28383 5.31964 5.52355 5.77571 6.10268 6.32115 6.41280 6.83989 7.05170 7.29908 7.61773 8.67828 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.005121 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.231087 B = 5465.970119 C = 6709.877962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.092 3.908 4 N -0.448 5.448 5 C -0.317 4.317 6 H 0.106 0.894 7 C 0.037 3.963 8 N -0.883 5.883 9 Si 0.920 3.080 10 H -0.251 1.251 11 H -0.287 1.287 12 H -0.270 1.270 13 C 0.531 3.469 14 O -0.597 6.597 15 C 0.010 3.990 16 C -0.015 4.015 17 C -0.195 4.195 18 C 0.467 3.533 19 O -0.560 6.560 20 N -0.308 5.308 21 C 0.067 3.933 22 C -0.081 4.081 23 C -0.112 4.112 24 C -0.062 4.062 25 C -0.146 4.146 26 C 0.092 3.908 27 F -0.150 7.150 28 N -0.148 5.148 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.279 0.721 37 H 0.186 0.814 38 H 0.202 0.798 39 H 0.132 0.868 40 H 0.176 0.824 41 H 0.187 0.813 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 -0.149 -0.221 4.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.030 4.030 4 N -0.166 5.166 5 C -0.447 4.447 6 H 0.123 0.877 7 C -0.169 4.169 8 N -0.520 5.520 9 Si 0.746 3.254 10 H -0.176 1.176 11 H -0.214 1.214 12 H -0.195 1.195 13 C 0.320 3.680 14 O -0.482 6.482 15 C -0.160 4.160 16 C -0.038 4.038 17 C -0.224 4.224 18 C 0.268 3.732 19 O -0.441 6.441 20 N -0.124 5.124 21 C -0.022 4.022 22 C -0.100 4.100 23 C -0.130 4.130 24 C -0.080 4.080 25 C -0.165 4.165 26 C 0.071 3.929 27 F -0.129 7.129 28 N 0.025 4.975 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.203 0.797 38 H 0.219 0.781 39 H 0.150 0.850 40 H 0.193 0.807 41 H 0.204 0.796 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.086 -0.031 0.371 5.100 hybrid contribution -0.544 0.195 -0.846 1.025 sum 4.542 0.164 -0.475 4.570 Atomic orbital electron populations 1.21677 0.93010 1.02954 1.02252 1.21713 0.97706 0.95310 1.01688 1.21969 0.80633 0.98964 1.01403 1.43843 1.05359 1.61558 1.05884 1.19454 1.13596 1.19554 0.92094 0.87740 1.25853 0.98478 0.97795 0.94747 1.69697 1.43151 1.35640 1.03504 0.86270 0.80637 0.79543 0.78939 1.17637 1.21393 1.19468 1.17628 0.84679 0.81894 0.83836 1.90643 1.68435 1.58230 1.30910 1.22096 0.95734 1.08013 0.90126 1.22458 0.93895 0.88511 0.98945 1.22803 0.94919 1.07304 0.97377 1.18801 0.88409 0.79578 0.86403 1.90882 1.13417 1.53511 1.86286 1.44414 1.03490 1.56099 1.08379 1.17774 1.02959 0.95627 0.85837 1.21295 0.96233 0.94006 0.98482 1.21550 0.98020 1.01615 0.91793 1.21680 0.95581 0.89975 1.00765 1.21479 0.99557 1.01914 0.93525 1.18246 0.99277 0.79443 0.95918 1.91443 1.86357 1.43128 1.91975 1.73091 0.92077 1.05803 1.26554 0.90739 0.92488 0.91818 0.92425 0.92533 0.91490 0.90803 0.91076 0.79666 0.78092 0.84986 0.80666 0.79578 0.81448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.13 -4.48 6.22 30.60 0.19 -4.29 16 3 C 0.09 3.81 3.81 86.38 0.33 4.14 16 4 N -0.45 -21.12 2.13 -638.97 -1.36 -22.48 16 5 C -0.32 -16.33 8.18 84.11 0.69 -15.64 16 6 H 0.11 5.96 5.93 -2.91 -0.02 5.94 16 7 C 0.04 1.88 5.41 84.96 0.46 2.34 16 8 N -0.88 -46.93 13.95 21.68 0.30 -46.63 16 9 Si 0.92 40.37 24.73 68.60 1.70 42.06 16 10 H -0.25 -10.09 6.70 99.48 0.67 -9.42 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.27 -12.15 7.04 99.48 0.70 -11.45 16 13 C 0.53 24.36 7.57 86.75 0.66 25.02 16 14 O -0.60 -27.52 16.04 -4.04 -0.06 -27.58 16 15 C 0.01 0.41 6.75 42.51 0.29 0.70 16 16 C -0.01 -0.49 9.68 22.66 0.22 -0.27 16 17 C -0.20 -6.20 10.11 22.56 0.23 -5.97 16 18 C 0.47 18.61 7.43 84.99 0.63 19.24 16 19 O -0.56 -24.21 17.04 -5.28 -0.09 -24.30 16 20 N -0.31 -13.10 3.08 -311.69 -0.96 -14.06 16 21 C 0.07 2.68 4.64 38.23 0.18 2.86 16 22 C -0.08 -2.71 9.97 22.39 0.22 -2.49 16 23 C -0.11 -2.75 10.04 22.26 0.22 -2.52 16 24 C -0.06 -1.38 10.04 22.29 0.22 -1.16 16 25 C -0.15 -4.14 10.02 22.29 0.22 -3.91 16 26 C 0.09 3.53 7.32 22.51 0.16 3.69 16 27 F -0.15 -6.34 17.08 44.97 0.77 -5.57 16 28 N -0.15 -6.75 6.80 -48.24 -0.33 -7.08 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.80 3.52 -2.39 -0.01 2.79 16 35 H 0.07 2.99 7.53 -2.39 -0.02 2.97 16 36 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.19 5.06 7.73 -2.91 -0.02 5.04 16 38 H 0.20 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 40 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 41 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -69.89 362.80 6.63 -63.26 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 1.02 Total: 23.76 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 5.64 Total: 18.62 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -2.35 Total: -90.25 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.15 Total: -51.88 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.77 Total: -5.57 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.70 Total: 42.06 kcal Total: -69.89 6.63 -63.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125764526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.182 kcal (2) G-P(sol) polarization free energy of solvation -69.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds