Wall clock time and date at job start Sat Apr 11 2020 07:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38279 * 126.31708 * 2 1 4 4 C 1.46972 * 126.44277 * 359.97438 * 3 2 1 5 5 C 1.35058 * 120.00077 * 179.71232 * 4 3 2 6 6 C 1.41791 * 120.00070 * 180.02562 * 5 4 3 7 7 O 1.21761 * 119.99893 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99904 * 180.02562 * 6 5 4 9 9 C 1.39992 * 119.99785 * 175.91114 * 8 6 5 10 10 C 1.38738 * 120.08331 * 34.59242 * 9 8 6 11 11 C 1.38183 * 120.02103 * 179.74817 * 10 9 8 12 12 C 1.38553 * 120.17709 * 0.55888 * 11 10 9 13 13 F 1.35101 * 119.91960 * 179.72577 * 12 11 10 14 14 C 1.38345 * 120.16073 * 359.69680 * 12 11 10 15 15 C 1.38736 * 119.97946 * 0.02562 * 14 12 11 16 16 O 1.35775 * 120.08815 * 179.97438 * 15 14 12 17 17 C 1.34807 * 117.00200 * 5.42382 * 16 15 14 18 18 H 1.08001 * 119.99588 * 354.96266 * 17 16 15 19 19 C 1.38631 * 119.99748 * 174.95701 * 17 16 15 20 20 N 1.31570 * 120.00684 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99811 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47386 * 59.99680 * 21 19 17 23 23 H 1.48503 * 109.47275 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46806 * 299.99921 * 21 19 17 25 25 C 1.41436 * 107.11734 * 179.74185 * 3 2 1 26 26 N 1.30436 * 108.03824 * 0.26116 * 25 3 2 27 27 N 1.34401 * 126.31961 * 180.19725 * 2 1 3 28 28 C 1.46504 * 125.74375 * 0.03065 * 27 2 1 29 29 H 1.09006 * 109.47511 * 89.99996 * 1 2 3 30 30 H 1.09002 * 109.47362 * 210.00011 * 1 2 3 31 31 H 1.09000 * 109.47518 * 330.00104 * 1 2 3 32 32 H 1.07993 * 119.99706 * 359.71770 * 4 3 2 33 33 H 1.08003 * 120.00118 * 0.02562 * 5 4 3 34 34 H 0.97000 * 120.00614 * 355.63463 * 8 6 5 35 35 H 1.08003 * 119.98471 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.91114 * 180.25531 * 11 10 9 37 37 H 1.08000 * 120.01057 * 180.02562 * 14 12 11 38 38 H 0.96996 * 120.00865 * 179.97438 * 20 19 17 39 39 H 1.08005 * 125.97679 * 180.26117 * 25 3 2 40 40 H 1.08994 * 109.46786 * 270.29583 * 28 27 2 41 41 H 1.08991 * 109.47241 * 30.29981 * 28 27 2 42 42 H 1.09010 * 109.47031 * 150.29830 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3259 1.1142 0.0000 4 6 1.8903 2.5179 -0.0005 5 6 2.8072 3.5095 0.0054 6 6 2.3870 4.8637 0.0055 7 8 1.1995 5.1326 0.0006 8 7 3.3020 5.8532 0.0109 9 6 2.8897 7.1882 -0.0755 10 6 1.7035 7.5897 0.5215 11 6 1.3003 8.9089 0.4398 12 6 2.0722 9.8318 -0.2473 13 9 1.6703 11.1191 -0.3286 14 6 3.2538 9.4385 -0.8499 15 6 3.6677 8.1169 -0.7672 16 8 4.8267 7.7283 -1.3582 17 6 5.5848 8.6950 -1.9132 18 1 5.2233 9.7121 -1.9469 19 6 6.8286 8.3835 -2.4403 20 7 7.2693 7.1445 -2.3987 21 14 7.8795 9.7232 -3.2087 22 1 8.1713 10.7668 -2.1934 23 1 9.1539 9.1354 -3.6940 24 1 7.1489 10.3325 -4.3489 25 6 3.6616 0.6491 0.0061 26 7 3.6352 -0.6550 0.0038 27 7 2.3030 -1.0829 -0.0037 28 6 1.8518 -2.4767 -0.0092 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 0.8371 2.7563 -0.0056 33 1 3.8606 3.2710 0.0101 34 1 4.2460 5.6406 0.0787 35 1 1.0972 6.8719 1.0540 36 1 0.3787 9.2204 0.9087 37 1 3.8538 10.1600 -1.3846 38 1 8.1394 6.9264 -2.7678 39 1 4.5482 1.2658 0.0116 40 1 1.7345 -2.8246 1.0171 41 1 0.8961 -2.5472 -0.5283 42 1 2.5895 -3.0954 -0.5204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128794320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:44 Heat of formation + Delta-G solvation = 14.617063 kcal Electronic energy + Delta-G solvation = -28318.120854 eV Core-core repulsion = 23987.925996 eV Total energy + Delta-G solvation = -4330.194858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.21824 -41.48616 -40.06428 -38.59043 -36.33339 -34.55406 -33.94973 -33.40047 -32.37906 -31.46766 -29.41331 -28.56123 -27.18399 -26.84984 -25.47380 -23.81590 -22.28218 -21.61953 -20.82876 -19.75655 -19.06489 -18.30511 -17.71196 -16.98063 -16.78272 -16.31393 -16.01202 -15.32555 -15.20142 -14.96151 -14.65387 -14.53471 -14.31838 -14.15996 -13.88883 -13.65230 -13.56109 -13.41864 -13.40341 -13.13896 -12.89068 -12.84876 -12.31996 -12.29452 -12.09551 -11.91302 -11.63597 -11.32384 -10.91616 -10.77871 -10.70231 -10.54322 -10.35866 -9.76466 -9.62273 -9.60001 -9.28925 -8.92820 -8.02823 -7.81890 -7.04907 -6.57039 -4.15047 0.87571 1.72906 1.96713 2.15000 2.16811 2.85322 3.09624 3.10344 3.12775 3.70407 3.82518 3.88992 4.17538 4.25089 4.40434 4.59179 4.71596 4.85538 4.89845 4.97804 4.99048 5.01284 5.09302 5.15823 5.20835 5.40782 5.47003 5.53192 5.63957 5.76082 5.78527 6.08025 6.25192 6.32181 6.44859 6.48514 6.61034 6.67770 6.82068 6.95597 6.99271 7.11840 7.25045 7.42466 7.69634 7.86259 8.04119 8.67567 8.88557 9.50218 10.59730 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010656 B = 0.002580 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.874101 B =10850.556177 C =13301.561527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.111 3.889 3 C -0.231 4.231 4 C 0.033 3.967 5 C -0.229 4.229 6 C 0.549 3.451 7 O -0.552 6.552 8 N -0.646 5.646 9 C 0.060 3.940 10 C -0.049 4.049 11 C -0.230 4.230 12 C 0.129 3.871 13 F -0.152 7.152 14 C -0.260 4.260 15 C 0.158 3.842 16 O -0.166 6.166 17 C -0.394 4.394 18 H 0.094 0.906 19 C 0.044 3.956 20 N -0.858 5.858 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C 0.080 3.920 26 N -0.302 5.302 27 N -0.368 5.368 28 C 0.097 3.903 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.415 0.585 35 H 0.142 0.858 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.272 0.728 39 H 0.192 0.808 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 -15.487 5.526 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.019 4.019 3 C -0.243 4.243 4 C 0.011 3.989 5 C -0.251 4.251 6 C 0.341 3.659 7 O -0.434 6.434 8 N -0.289 5.289 9 C -0.035 4.035 10 C -0.070 4.070 11 C -0.251 4.251 12 C 0.109 3.891 13 F -0.131 7.131 14 C -0.281 4.281 15 C 0.102 3.898 16 O -0.069 6.069 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.161 4.161 20 N -0.492 5.492 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.107 4.107 26 N -0.121 5.121 27 N -0.147 5.147 28 C -0.044 4.044 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.251 0.749 35 H 0.160 0.840 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.082 0.918 39 H 0.209 0.791 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.982 -16.919 5.384 20.368 hybrid contribution 0.670 1.575 -0.523 1.790 sum -9.312 -15.344 4.861 18.595 Atomic orbital electron populations 1.20562 0.86624 1.04433 1.03943 1.21669 0.94580 0.87003 0.98643 1.19205 0.92189 0.92898 1.19964 1.21520 0.99562 0.88500 0.89290 1.21667 1.00768 0.92241 1.10440 1.17102 0.85835 0.86020 0.76895 1.90751 1.16680 1.84900 1.51057 1.43082 1.10854 1.03844 1.71078 1.16891 0.98119 0.83332 1.05117 1.20662 0.94633 0.94765 0.96893 1.20484 1.02634 0.93150 1.08798 1.17464 0.94336 0.77933 0.99369 1.91407 1.90637 1.36185 1.94858 1.20847 0.99212 0.97375 1.10635 1.18860 0.88785 0.91143 0.91039 1.83935 1.26062 1.35543 1.61364 1.21304 0.98236 0.89733 1.37663 0.88896 1.25270 0.96140 0.97747 0.96983 1.69998 1.19560 1.17577 1.42105 0.85763 0.78770 0.79449 0.79433 1.19363 1.20197 1.19390 1.24203 0.97874 0.91591 0.97031 1.77178 0.95837 1.13644 1.25401 1.48299 1.04172 1.06172 1.56087 1.21905 1.01189 0.77707 1.03574 0.89507 0.90795 0.88826 0.84911 0.85624 0.74858 0.84032 0.85995 0.84024 0.91771 0.79146 0.90505 0.89344 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 9.69 36.00 0.35 -0.22 16 2 C 0.11 1.07 7.02 -81.45 -0.57 0.50 16 3 C -0.23 -2.69 6.08 -105.13 -0.64 -3.32 16 4 C 0.03 0.41 9.33 -37.18 -0.35 0.06 16 5 C -0.23 -3.23 9.33 -39.36 -0.37 -3.59 16 6 C 0.55 9.67 7.41 -14.90 -0.11 9.56 16 7 O -0.55 -10.85 13.52 5.13 0.07 -10.78 16 8 N -0.65 -12.22 5.17 -12.27 -0.06 -12.28 16 9 C 0.06 1.27 6.33 -83.48 -0.53 0.74 16 10 C -0.05 -0.96 8.69 -39.42 -0.34 -1.31 16 11 C -0.23 -4.35 10.02 -39.49 -0.40 -4.75 16 12 C 0.13 2.62 7.29 -39.43 -0.29 2.33 16 13 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 14 C -0.26 -5.76 9.14 -39.36 -0.36 -6.12 16 15 C 0.16 3.70 6.67 -38.93 -0.26 3.44 16 16 O -0.17 -4.39 9.32 0.04 0.00 -4.39 16 17 C -0.39 -10.47 9.49 30.88 0.29 -10.17 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 19 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 20 N -0.86 -23.58 13.67 55.48 0.76 -22.82 16 21 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C 0.08 0.95 11.39 -16.93 -0.19 0.75 16 26 N -0.30 -3.73 12.49 30.89 0.39 -3.35 16 27 N -0.37 -3.59 3.98 -63.24 -0.25 -3.84 16 28 C 0.10 0.49 11.06 59.85 0.66 1.16 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.27 7.72 -51.93 -0.40 -0.13 16 31 H 0.09 0.54 7.61 -51.93 -0.40 0.14 16 32 H 0.13 1.61 7.02 -52.49 -0.37 1.24 16 33 H 0.13 1.54 6.93 -52.48 -0.36 1.17 16 34 H 0.42 7.49 8.54 -40.82 -0.35 7.14 16 35 H 0.14 2.66 6.20 -52.48 -0.33 2.33 16 36 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.19 1.89 7.31 -52.48 -0.38 1.51 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.23 7.65 -51.93 -0.40 -0.16 16 42 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -33.20 371.34 -6.06 -39.26 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.38 Total: 10.58 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -3.19 Total: -9.89 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.83 Total: -42.29 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.07 Total: -15.17 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.20 -6.06 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128794320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.880 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds