Wall clock time and date at job start Sat Apr 11 2020 07:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38279 * 126.31708 * 2 1 4 4 C 1.46972 * 126.44277 * 359.97438 * 3 2 1 5 5 C 1.35058 * 120.00077 * 179.71232 * 4 3 2 6 6 C 1.41791 * 120.00070 * 180.02562 * 5 4 3 7 7 O 1.21761 * 119.99893 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99904 * 180.02562 * 6 5 4 9 9 C 1.39992 * 119.99785 * 175.91114 * 8 6 5 10 10 C 1.38738 * 120.08331 * 34.59242 * 9 8 6 11 11 C 1.38183 * 120.02103 * 179.74817 * 10 9 8 12 12 C 1.38553 * 120.17709 * 0.55888 * 11 10 9 13 13 F 1.35101 * 119.91960 * 179.72577 * 12 11 10 14 14 C 1.38345 * 120.16073 * 359.69680 * 12 11 10 15 15 C 1.38736 * 119.97946 * 0.02562 * 14 12 11 16 16 O 1.35775 * 120.08815 * 179.97438 * 15 14 12 17 17 C 1.34807 * 117.00200 * 5.42382 * 16 15 14 18 18 H 1.08001 * 119.99588 * 354.96266 * 17 16 15 19 19 C 1.38631 * 119.99748 * 174.95701 * 17 16 15 20 20 N 1.31570 * 120.00684 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99811 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47386 * 59.99680 * 21 19 17 23 23 H 1.48503 * 109.47275 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46806 * 299.99921 * 21 19 17 25 25 C 1.41436 * 107.11734 * 179.74185 * 3 2 1 26 26 N 1.30436 * 108.03824 * 0.26116 * 25 3 2 27 27 N 1.34401 * 126.31961 * 180.19725 * 2 1 3 28 28 C 1.46504 * 125.74375 * 0.03065 * 27 2 1 29 29 H 1.09006 * 109.47511 * 89.99996 * 1 2 3 30 30 H 1.09002 * 109.47362 * 210.00011 * 1 2 3 31 31 H 1.09000 * 109.47518 * 330.00104 * 1 2 3 32 32 H 1.07993 * 119.99706 * 359.71770 * 4 3 2 33 33 H 1.08003 * 120.00118 * 0.02562 * 5 4 3 34 34 H 0.97000 * 120.00614 * 355.63463 * 8 6 5 35 35 H 1.08003 * 119.98471 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.91114 * 180.25531 * 11 10 9 37 37 H 1.08000 * 120.01057 * 180.02562 * 14 12 11 38 38 H 0.96996 * 120.00865 * 179.97438 * 20 19 17 39 39 H 1.08005 * 125.97679 * 180.26117 * 25 3 2 40 40 H 1.08994 * 109.46786 * 270.29583 * 28 27 2 41 41 H 1.08991 * 109.47241 * 30.29981 * 28 27 2 42 42 H 1.09010 * 109.47031 * 150.29830 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3259 1.1142 0.0000 4 6 1.8903 2.5179 -0.0005 5 6 2.8072 3.5095 0.0054 6 6 2.3870 4.8637 0.0055 7 8 1.1995 5.1326 0.0006 8 7 3.3020 5.8532 0.0109 9 6 2.8897 7.1882 -0.0755 10 6 1.7035 7.5897 0.5215 11 6 1.3003 8.9089 0.4398 12 6 2.0722 9.8318 -0.2473 13 9 1.6703 11.1191 -0.3286 14 6 3.2538 9.4385 -0.8499 15 6 3.6677 8.1169 -0.7672 16 8 4.8267 7.7283 -1.3582 17 6 5.5848 8.6950 -1.9132 18 1 5.2233 9.7121 -1.9469 19 6 6.8286 8.3835 -2.4403 20 7 7.2693 7.1445 -2.3987 21 14 7.8795 9.7232 -3.2087 22 1 8.1713 10.7668 -2.1934 23 1 9.1539 9.1354 -3.6940 24 1 7.1489 10.3325 -4.3489 25 6 3.6616 0.6491 0.0061 26 7 3.6352 -0.6550 0.0038 27 7 2.3030 -1.0829 -0.0037 28 6 1.8518 -2.4767 -0.0092 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 0.8371 2.7563 -0.0056 33 1 3.8606 3.2710 0.0101 34 1 4.2460 5.6406 0.0787 35 1 1.0972 6.8719 1.0540 36 1 0.3787 9.2204 0.9087 37 1 3.8538 10.1600 -1.3846 38 1 8.1394 6.9264 -2.7678 39 1 4.5482 1.2658 0.0116 40 1 1.7345 -2.8246 1.0171 41 1 0.8961 -2.5472 -0.5283 42 1 2.5895 -3.0954 -0.5204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128794320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:44 Heat of formation + Delta-G solvation = -6.051997 kcal Electronic energy + Delta-G solvation = -28319.017131 eV Core-core repulsion = 23987.925996 eV Total energy + Delta-G solvation = -4331.091135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.81650 -42.29295 -41.60471 -40.22317 -38.03506 -35.60088 -35.32598 -34.29810 -34.18748 -32.28099 -31.07321 -30.05360 -27.97538 -27.60840 -27.32675 -25.00333 -23.85458 -23.04047 -21.99104 -20.70805 -20.21544 -20.11222 -19.35356 -18.27965 -18.15382 -17.30075 -17.00583 -16.87271 -16.67627 -16.55507 -16.01760 -15.89957 -15.57767 -15.38542 -15.34286 -15.22419 -14.96209 -14.51928 -14.18721 -14.04968 -14.00114 -13.72988 -13.45271 -13.42328 -13.31626 -13.00799 -12.92195 -12.85315 -12.54647 -12.32669 -12.16322 -11.63945 -11.62781 -11.34592 -11.14248 -10.83040 -10.78548 -10.35356 -9.54583 -8.99169 -8.66255 -8.49151 -6.15937 -0.17246 0.31031 0.48777 0.92133 1.37365 1.46108 1.51447 1.51669 1.82016 2.14571 2.32337 2.51945 2.75744 3.07530 3.19279 3.46319 3.48079 3.63524 3.93748 3.99667 4.03625 4.14315 4.22152 4.34001 4.39153 4.39480 4.54163 4.63076 4.66566 4.69944 4.71858 4.93610 4.96953 5.03944 5.05543 5.23975 5.28693 5.35775 5.41008 5.48858 5.53841 5.63142 5.94461 5.98892 6.07385 6.58073 6.60284 6.94572 7.23976 7.64317 8.70849 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010656 B = 0.002580 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.874101 B =10850.556177 C =13301.561527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.131 3.869 3 C -0.268 4.268 4 C 0.070 3.930 5 C -0.263 4.263 6 C 0.552 3.448 7 O -0.576 6.576 8 N -0.652 5.652 9 C 0.060 3.940 10 C -0.051 4.051 11 C -0.204 4.204 12 C 0.122 3.878 13 F -0.144 7.144 14 C -0.266 4.266 15 C 0.130 3.870 16 O -0.202 6.202 17 C -0.418 4.418 18 H 0.099 0.901 19 C -0.009 4.009 20 N -0.905 5.905 21 Si 1.011 2.989 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.262 1.262 25 C 0.071 3.929 26 N -0.335 5.335 27 N -0.366 5.366 28 C 0.085 3.915 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.416 0.584 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.275 0.725 39 H 0.197 0.803 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.514 -16.478 6.050 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.002 4.002 3 C -0.279 4.279 4 C 0.049 3.951 5 C -0.285 4.285 6 C 0.348 3.652 7 O -0.460 6.460 8 N -0.295 5.295 9 C -0.035 4.035 10 C -0.071 4.071 11 C -0.224 4.224 12 C 0.102 3.898 13 F -0.123 7.123 14 C -0.287 4.287 15 C 0.076 3.924 16 O -0.107 6.107 17 C -0.494 4.494 18 H 0.116 0.884 19 C -0.208 4.208 20 N -0.541 5.541 21 Si 0.831 3.169 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.186 1.186 25 C -0.115 4.115 26 N -0.154 5.154 27 N -0.145 5.145 28 C -0.055 4.055 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.252 0.748 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.153 0.847 38 H 0.084 0.916 39 H 0.214 0.786 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.331 -17.934 5.932 22.559 hybrid contribution 1.072 1.654 -0.552 2.047 sum -11.260 -16.280 5.380 20.512 Atomic orbital electron populations 1.20779 0.83572 1.06043 1.05319 1.22271 0.96244 0.86261 0.95428 1.19279 0.92660 0.93004 1.22937 1.21618 0.99412 0.88717 0.85371 1.21501 1.01794 0.90669 1.14507 1.17538 0.85252 0.86776 0.75674 1.90711 1.17374 1.85347 1.52548 1.43200 1.11260 1.03432 1.71618 1.17211 0.98119 0.84124 1.04076 1.20889 0.94063 0.95446 0.96685 1.20894 1.02928 0.92218 1.06351 1.17457 0.94016 0.78597 0.99688 1.91426 1.90423 1.35645 1.94826 1.20927 1.00015 0.96959 1.10769 1.19238 0.88738 0.92348 0.92082 1.83918 1.27394 1.36010 1.63355 1.21721 0.99004 0.90267 1.38397 0.88359 1.26390 0.97051 1.00160 0.97247 1.70118 1.20258 1.19686 1.44045 0.84746 0.76940 0.76545 0.78684 1.18355 1.19446 1.18614 1.24428 0.98572 0.91815 0.96689 1.77124 0.97840 1.13824 1.26642 1.48729 1.03358 1.07859 1.54600 1.22343 1.02591 0.75310 1.05214 0.88009 0.87922 0.88556 0.84333 0.84617 0.74800 0.82735 0.82317 0.84674 0.91605 0.78614 0.88844 0.86249 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.69 71.23 0.69 -0.10 16 2 C 0.13 2.20 7.02 42.17 0.30 2.50 16 3 C -0.27 -5.97 6.08 -20.19 -0.12 -6.09 16 4 C 0.07 1.71 9.33 23.83 0.22 1.93 16 5 C -0.26 -7.52 9.33 22.42 0.21 -7.31 16 6 C 0.55 19.74 7.41 85.12 0.63 20.37 16 7 O -0.58 -22.42 13.52 -4.54 -0.06 -22.48 16 8 N -0.65 -25.53 5.17 -310.93 -1.61 -27.14 16 9 C 0.06 2.58 6.33 38.26 0.24 2.82 16 10 C -0.05 -1.92 8.69 22.38 0.19 -1.73 16 11 C -0.20 -7.23 10.02 22.33 0.22 -7.00 16 12 C 0.12 4.82 7.29 22.37 0.16 4.99 16 13 F -0.14 -5.35 17.26 44.97 0.78 -4.57 16 14 C -0.27 -11.98 9.14 22.41 0.20 -11.78 16 15 C 0.13 6.28 6.67 22.69 0.15 6.43 16 16 O -0.20 -11.22 9.32 -22.78 -0.21 -11.43 16 17 C -0.42 -23.18 9.49 67.91 0.64 -22.54 16 18 H 0.10 5.11 5.20 -2.91 -0.02 5.09 16 19 C -0.01 -0.47 5.49 84.83 0.47 0.00 16 20 N -0.90 -51.79 13.67 21.61 0.30 -51.50 16 21 Si 1.01 41.42 29.55 68.60 2.03 43.44 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 C 0.07 1.69 11.39 85.69 0.98 2.67 16 26 N -0.33 -8.11 12.49 -56.18 -0.70 -8.81 16 27 N -0.37 -6.40 3.98 -354.01 -1.41 -7.81 16 28 C 0.08 0.61 11.06 127.77 1.41 2.02 16 29 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.10 0.27 7.72 -2.39 -0.02 0.25 16 31 H 0.10 0.78 7.61 -2.39 -0.02 0.76 16 32 H 0.14 3.17 7.02 -2.91 -0.02 3.15 16 33 H 0.14 3.50 6.93 -2.91 -0.02 3.48 16 34 H 0.42 15.96 8.54 -92.71 -0.79 15.17 16 35 H 0.16 5.55 6.20 -2.91 -0.02 5.53 16 36 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.14 6.16 5.64 -2.91 -0.02 6.14 16 38 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.20 4.09 7.31 -2.91 -0.02 4.07 16 40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.12 0.13 7.65 -2.39 -0.02 0.11 16 42 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -74.39 371.34 6.02 -68.37 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.31 Total: 34.75 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 6.60 Total: -12.82 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.42 Total: -95.27 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.27 Total: -33.91 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -74.39 6.02 -68.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128794320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.320 kcal (2) G-P(sol) polarization free energy of solvation -74.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds