Wall clock time and date at job start Sat Apr 11 2020 07:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38133 * 119.98049 * 2 1 4 4 C 1.38825 * 119.95825 * 180.27926 * 3 2 1 5 5 N 1.40029 * 120.04780 * 179.97438 * 4 3 2 6 6 C 1.46759 * 124.34840 * 173.17410 * 5 4 3 7 7 C 1.54484 * 105.47374 * 197.01295 * 6 5 4 8 8 H 1.08991 * 110.97030 * 216.46353 * 7 6 5 9 9 C 1.50708 * 110.96774 * 92.73776 * 7 6 5 10 10 O 1.21289 * 119.99808 * 272.76659 * 9 7 6 11 11 N 1.34771 * 119.99745 * 92.76786 * 9 7 6 12 12 C 1.37102 * 119.99730 * 184.20957 * 11 9 7 13 13 H 1.08000 * 120.00131 * 17.02728 * 12 11 9 14 14 C 1.38953 * 119.99674 * 197.03564 * 12 11 9 15 15 N 1.31412 * 120.00134 * 14.33098 * 14 12 11 16 16 Si 1.86796 * 119.99564 * 194.33382 * 14 12 11 17 17 H 1.48505 * 109.47360 * 60.00282 * 16 14 12 18 18 H 1.48504 * 109.46818 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47456 * 299.99531 * 16 14 12 20 20 C 1.46494 * 120.00162 * 4.20354 * 11 9 7 21 21 C 1.47209 * 109.46971 * 83.54262 * 20 11 9 22 22 N 8.79853 * 170.04759 * 224.76800 * 3 1 2 23 23 C 1.54626 * 101.76312 * 334.58433 * 7 6 5 24 24 C 1.34422 * 124.34908 * 352.86878 * 5 4 3 25 25 O 1.21290 * 124.94104 * 359.58138 * 24 5 4 26 26 C 1.38873 * 119.90782 * 359.97438 * 4 3 2 27 27 C 1.38091 * 119.95481 * 0.02562 * 26 4 3 28 28 C 1.38452 * 119.97441 * 180.28163 * 2 1 3 29 29 F 1.35101 * 119.95357 * 359.74126 * 28 2 1 30 30 H 1.09003 * 109.47084 * 269.72760 * 1 2 3 31 31 H 1.08999 * 109.47110 * 29.71870 * 1 2 3 32 32 H 1.08997 * 109.47710 * 149.71843 * 1 2 3 33 33 H 1.08003 * 120.01805 * 0.25555 * 3 2 1 34 34 H 1.09000 * 110.24854 * 316.01046 * 6 5 4 35 35 H 1.09004 * 110.24732 * 77.92783 * 6 5 4 36 36 H 0.97001 * 119.99524 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.47222 * 203.54360 * 20 11 9 38 38 H 1.08997 * 109.47847 * 323.54544 * 20 11 9 39 39 H 1.09002 * 110.48875 * 143.47228 * 23 7 6 40 40 H 1.08997 * 110.48972 * 266.11593 * 23 7 6 41 41 H 1.08001 * 120.02716 * 180.02562 * 26 4 3 42 42 H 1.07999 * 119.97817 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1965 0.0000 4 6 3.5855 1.1960 -0.0059 5 7 4.2871 2.4078 -0.0064 6 6 5.7438 2.5213 0.1317 7 6 6.0082 3.9953 0.5110 8 1 6.9236 4.3598 0.0450 9 6 6.0633 4.1656 2.0074 10 8 5.0436 4.3653 2.6330 11 7 7.2457 4.0958 2.6504 12 6 7.2867 4.1643 4.0191 13 1 6.3885 3.9980 4.5953 14 6 8.4839 4.4478 4.6649 15 7 9.5017 4.9234 3.9831 16 14 8.6466 4.1527 6.5022 17 1 8.4123 2.7159 6.7956 18 1 10.0124 4.5315 6.9454 19 1 7.6448 4.9756 7.2264 20 6 8.4870 3.9468 1.8869 21 6 8.9413 5.2690 1.4259 22 7 9.2918 6.2891 1.0709 23 6 4.7665 4.7010 -0.0817 24 6 3.7136 3.6162 -0.1394 25 8 2.5246 3.8089 -0.2820 26 6 4.2775 -0.0081 -0.0112 27 6 3.5837 -1.2021 -0.0112 28 6 2.1987 -1.1993 -0.0059 29 9 1.5218 -2.3685 -0.0064 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3633 0.8925 -0.5095 32 1 -0.3634 -0.8874 -0.5182 33 1 1.6572 2.1318 0.0042 34 1 6.1007 1.8591 0.9204 35 1 6.2322 2.2800 -0.8125 36 1 10.3373 5.1217 4.4341 37 1 9.2527 3.5005 2.5216 38 1 8.3089 3.3032 1.0255 39 1 4.4442 5.5151 0.5675 40 1 4.9809 5.0728 -1.0836 41 1 5.3575 -0.0107 -0.0153 42 1 4.1214 -2.1386 -0.0149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180623438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:48 Heat of formation + Delta-G solvation = -38.108947 kcal Electronic energy + Delta-G solvation = -29991.668340 eV Core-core repulsion = 25659.187111 eV Total energy + Delta-G solvation = -4332.481229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.87026 -41.25973 -39.20613 -38.38181 -36.47437 -35.86498 -34.54558 -33.37672 -32.48313 -31.89295 -29.03657 -28.09812 -27.59121 -26.93859 -25.32459 -23.28214 -23.13996 -21.43222 -19.67751 -19.21274 -18.10032 -17.64753 -17.49652 -17.29625 -16.53728 -16.34576 -15.79643 -15.56007 -15.19310 -14.78433 -14.46391 -14.29139 -14.03236 -13.77064 -13.55561 -13.38580 -13.30409 -13.20418 -13.16672 -13.14284 -13.02823 -12.47919 -12.20530 -11.99698 -11.96517 -11.80069 -11.59355 -11.44094 -11.27684 -11.24893 -11.14853 -10.70339 -10.54105 -10.47635 -10.09763 -9.61521 -9.41864 -8.98139 -8.80238 -8.23062 -7.85804 -6.62837 -4.17632 1.01716 1.14723 2.56157 2.76063 2.99743 3.13683 3.15045 3.30190 3.55300 3.58789 3.81685 3.96672 4.21760 4.25753 4.41339 4.49491 4.63444 4.68884 4.78893 4.83655 5.01541 5.05219 5.12879 5.17286 5.24589 5.35977 5.42225 5.49612 5.56841 5.59818 5.76497 5.78557 5.88186 5.92575 6.00380 6.03197 6.12190 6.28358 6.45028 6.48481 6.94647 7.00982 7.31908 7.69528 8.06869 8.11080 8.56799 8.82722 9.01179 9.51894 10.41039 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.003109 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.735077 B = 9004.585542 C = 9832.426055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.174 3.826 5 N -0.556 5.556 6 C 0.110 3.890 7 C -0.122 4.122 8 H 0.113 0.887 9 C 0.455 3.545 10 O -0.562 6.562 11 N -0.436 5.436 12 C -0.309 4.309 13 H 0.109 0.891 14 C 0.032 3.968 15 N -0.884 5.884 16 Si 0.933 3.067 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.216 3.784 21 C 0.244 3.756 22 N -0.471 5.471 23 C -0.132 4.132 24 C 0.534 3.466 25 O -0.513 6.513 26 C -0.138 4.138 27 C -0.119 4.119 28 C 0.060 3.940 29 F -0.143 7.143 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.164 0.836 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.276 0.724 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.137 0.863 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 -11.618 -9.979 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.153 4.153 4 C 0.079 3.921 5 N -0.278 5.278 6 C -0.013 4.013 7 C -0.144 4.144 8 H 0.131 0.869 9 C 0.243 3.757 10 O -0.444 6.444 11 N -0.156 5.156 12 C -0.435 4.435 13 H 0.126 0.874 14 C -0.171 4.171 15 N -0.524 5.524 16 Si 0.759 3.241 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.198 1.198 20 C 0.088 3.912 21 C -0.075 4.075 22 N -0.151 5.151 23 C -0.172 4.172 24 C 0.325 3.675 25 O -0.389 6.389 26 C -0.159 4.159 27 C -0.139 4.139 28 C 0.040 3.960 29 F -0.122 7.122 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.181 0.819 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.159 0.841 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.155 0.845 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.701 -9.850 -10.181 15.270 hybrid contribution 0.417 -0.600 1.215 1.418 sum -5.284 -10.450 -8.966 14.748 Atomic orbital electron populations 1.20729 0.90040 1.03256 1.02969 1.19797 0.97040 0.91257 1.01000 1.21403 0.92311 0.99531 1.02006 1.17784 0.91180 0.84721 0.98404 1.45775 1.08600 1.04807 1.68632 1.22238 0.78956 0.97262 1.02846 1.22334 1.00168 0.94964 0.96939 0.86933 1.19646 0.84732 0.83919 0.87410 1.90606 1.33638 1.52592 1.67538 1.43607 1.02733 1.62770 1.06509 1.19750 0.97310 1.46818 0.79666 0.87368 1.25302 0.95528 0.95312 1.00929 1.69780 1.04499 1.40937 1.37159 0.85865 0.77539 0.79148 0.81513 1.19609 1.20833 1.19754 1.18947 0.90400 0.86271 0.95544 1.29349 0.92588 0.95385 0.90150 1.80921 1.09502 1.11285 1.13342 1.22205 0.93048 0.98227 1.03738 1.20992 0.89043 0.83829 0.73640 1.90581 1.15725 1.83965 1.48643 1.20617 1.00278 0.89936 1.05037 1.20843 0.92028 0.99015 1.01984 1.17462 0.89996 0.80892 1.07662 1.91448 1.80313 1.46082 1.94354 0.90640 0.90740 0.91207 0.81916 0.88738 0.89197 0.91351 0.84097 0.90243 0.86323 0.87129 0.84536 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.83 36.01 0.35 -0.83 16 2 C -0.09 -1.15 5.88 -104.58 -0.62 -1.76 16 3 C -0.13 -1.92 8.93 -39.40 -0.35 -2.27 16 4 C 0.17 2.42 6.59 -83.66 -0.55 1.87 16 5 N -0.56 -7.88 3.14 -112.25 -0.35 -8.23 16 6 C 0.11 1.26 5.68 -3.12 -0.02 1.24 16 7 C -0.12 -1.72 2.57 -90.13 -0.23 -1.95 16 8 H 0.11 1.35 6.12 -51.93 -0.32 1.03 16 9 C 0.46 9.06 6.59 -10.98 -0.07 8.99 16 10 O -0.56 -13.61 15.65 5.55 0.09 -13.53 16 11 N -0.44 -9.04 2.61 -117.93 -0.31 -9.35 16 12 C -0.31 -7.33 9.37 -14.93 -0.14 -7.47 16 13 H 0.11 2.76 7.37 -52.49 -0.39 2.37 16 14 C 0.03 0.74 5.06 -17.47 -0.09 0.65 16 15 N -0.88 -20.48 9.11 55.50 0.51 -19.97 16 16 Si 0.93 18.70 29.58 -169.99 -5.03 13.67 16 17 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 C 0.22 3.69 4.78 -6.83 -0.03 3.66 16 21 C 0.24 4.78 13.04 -20.77 -0.27 4.51 16 22 N -0.47 -10.16 18.53 42.14 0.78 -9.38 16 23 C -0.13 -1.87 6.08 -26.74 -0.16 -2.04 16 24 C 0.53 8.60 7.84 -10.86 -0.09 8.52 16 25 O -0.51 -9.47 14.84 5.55 0.08 -9.38 16 26 C -0.14 -1.57 9.41 -39.40 -0.37 -1.94 16 27 C -0.12 -1.31 10.02 -39.54 -0.40 -1.71 16 28 C 0.06 0.74 7.24 -39.41 -0.29 0.46 16 29 F -0.14 -1.77 16.47 2.25 0.04 -1.74 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.07 0.66 7.64 -51.93 -0.40 0.26 16 33 H 0.16 2.62 5.29 -52.48 -0.28 2.34 16 34 H 0.09 1.07 7.50 -51.93 -0.39 0.68 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.28 6.27 8.31 -40.82 -0.34 5.93 16 37 H 0.14 2.55 6.12 -51.93 -0.32 2.23 16 38 H 0.08 0.93 6.65 -51.93 -0.35 0.59 16 39 H 0.12 1.95 7.51 -51.93 -0.39 1.56 16 40 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.14 1.20 7.05 -52.49 -0.37 0.83 16 42 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -31.25 360.25 -6.52 -37.77 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.44 Total: 4.78 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -3.32 Total: 9.93 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.63 Total: -46.93 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.17 Total: -22.91 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.25 -6.52 -37.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180623438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.343 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds