Wall clock time and date at job start Sat Apr 11 2020 07:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38133 * 119.98049 * 2 1 4 4 C 1.38825 * 119.95825 * 180.27926 * 3 2 1 5 5 N 1.40029 * 120.04780 * 179.97438 * 4 3 2 6 6 C 1.46759 * 124.34840 * 173.17410 * 5 4 3 7 7 C 1.54484 * 105.47374 * 197.01295 * 6 5 4 8 8 H 1.08991 * 110.97030 * 216.46353 * 7 6 5 9 9 C 1.50708 * 110.96774 * 92.73776 * 7 6 5 10 10 O 1.21289 * 119.99808 * 272.76659 * 9 7 6 11 11 N 1.34771 * 119.99745 * 92.76786 * 9 7 6 12 12 C 1.37102 * 119.99730 * 184.20957 * 11 9 7 13 13 H 1.08000 * 120.00131 * 17.02728 * 12 11 9 14 14 C 1.38953 * 119.99674 * 197.03564 * 12 11 9 15 15 N 1.31412 * 120.00134 * 14.33098 * 14 12 11 16 16 Si 1.86796 * 119.99564 * 194.33382 * 14 12 11 17 17 H 1.48505 * 109.47360 * 60.00282 * 16 14 12 18 18 H 1.48504 * 109.46818 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47456 * 299.99531 * 16 14 12 20 20 C 1.46494 * 120.00162 * 4.20354 * 11 9 7 21 21 C 1.47209 * 109.46971 * 83.54262 * 20 11 9 22 22 N 8.79853 * 170.04759 * 224.76800 * 3 1 2 23 23 C 1.54626 * 101.76312 * 334.58433 * 7 6 5 24 24 C 1.34422 * 124.34908 * 352.86878 * 5 4 3 25 25 O 1.21290 * 124.94104 * 359.58138 * 24 5 4 26 26 C 1.38873 * 119.90782 * 359.97438 * 4 3 2 27 27 C 1.38091 * 119.95481 * 0.02562 * 26 4 3 28 28 C 1.38452 * 119.97441 * 180.28163 * 2 1 3 29 29 F 1.35101 * 119.95357 * 359.74126 * 28 2 1 30 30 H 1.09003 * 109.47084 * 269.72760 * 1 2 3 31 31 H 1.08999 * 109.47110 * 29.71870 * 1 2 3 32 32 H 1.08997 * 109.47710 * 149.71843 * 1 2 3 33 33 H 1.08003 * 120.01805 * 0.25555 * 3 2 1 34 34 H 1.09000 * 110.24854 * 316.01046 * 6 5 4 35 35 H 1.09004 * 110.24732 * 77.92783 * 6 5 4 36 36 H 0.97001 * 119.99524 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.47222 * 203.54360 * 20 11 9 38 38 H 1.08997 * 109.47847 * 323.54544 * 20 11 9 39 39 H 1.09002 * 110.48875 * 143.47228 * 23 7 6 40 40 H 1.08997 * 110.48972 * 266.11593 * 23 7 6 41 41 H 1.08001 * 120.02716 * 180.02562 * 26 4 3 42 42 H 1.07999 * 119.97817 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1965 0.0000 4 6 3.5855 1.1960 -0.0059 5 7 4.2871 2.4078 -0.0064 6 6 5.7438 2.5213 0.1317 7 6 6.0082 3.9953 0.5110 8 1 6.9236 4.3598 0.0450 9 6 6.0633 4.1656 2.0074 10 8 5.0436 4.3653 2.6330 11 7 7.2457 4.0958 2.6504 12 6 7.2867 4.1643 4.0191 13 1 6.3885 3.9980 4.5953 14 6 8.4839 4.4478 4.6649 15 7 9.5017 4.9234 3.9831 16 14 8.6466 4.1527 6.5022 17 1 8.4123 2.7159 6.7956 18 1 10.0124 4.5315 6.9454 19 1 7.6448 4.9756 7.2264 20 6 8.4870 3.9468 1.8869 21 6 8.9413 5.2690 1.4259 22 7 9.2918 6.2891 1.0709 23 6 4.7665 4.7010 -0.0817 24 6 3.7136 3.6162 -0.1394 25 8 2.5246 3.8089 -0.2820 26 6 4.2775 -0.0081 -0.0112 27 6 3.5837 -1.2021 -0.0112 28 6 2.1987 -1.1993 -0.0059 29 9 1.5218 -2.3685 -0.0064 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3633 0.8925 -0.5095 32 1 -0.3634 -0.8874 -0.5182 33 1 1.6572 2.1318 0.0042 34 1 6.1007 1.8591 0.9204 35 1 6.2322 2.2800 -0.8125 36 1 10.3373 5.1217 4.4341 37 1 9.2527 3.5005 2.5216 38 1 8.3089 3.3032 1.0255 39 1 4.4442 5.5151 0.5675 40 1 4.9809 5.0728 -1.0836 41 1 5.3575 -0.0107 -0.0153 42 1 4.1214 -2.1386 -0.0149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180623438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:47 Heat of formation + Delta-G solvation = -56.073669 kcal Electronic energy + Delta-G solvation = -29992.447349 eV Core-core repulsion = 25659.187111 eV Total energy + Delta-G solvation = -4333.260238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.81977 -42.38666 -40.56380 -39.51433 -37.80732 -37.35350 -36.17710 -34.46979 -33.70081 -33.29813 -30.09861 -29.30721 -28.94932 -27.87539 -26.84598 -24.42819 -24.23034 -22.48393 -20.77360 -20.57599 -19.73845 -18.79901 -18.55411 -18.45935 -17.84552 -17.51970 -17.07849 -16.63102 -16.28204 -16.22363 -15.95861 -15.63571 -15.18061 -14.81160 -14.74940 -14.68698 -14.54434 -14.27072 -14.21742 -14.20863 -14.08310 -13.74079 -13.62946 -13.29568 -13.18103 -12.99393 -12.92599 -12.84647 -12.65616 -12.49439 -12.31775 -12.14329 -12.11065 -12.05192 -11.12584 -11.09506 -10.78888 -10.39307 -9.92997 -9.90734 -8.85785 -8.37394 -5.97524 0.03312 0.21203 1.37323 1.44433 1.49077 1.55827 1.73845 1.79875 2.03951 2.30342 2.35736 2.62665 2.99389 3.01519 3.15708 3.33076 3.39619 3.65345 3.68073 3.77146 3.83258 3.89809 4.13769 4.24305 4.32918 4.39185 4.53310 4.56070 4.66380 4.68570 4.72672 4.75675 4.80681 4.88536 5.05277 5.09568 5.14302 5.16114 5.30999 5.48001 5.48586 5.94095 5.99317 6.02860 6.40567 6.92357 7.04834 7.12785 7.35211 7.90252 8.62854 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.003109 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.735077 B = 9004.585542 C = 9832.426055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.157 4.157 4 C 0.152 3.848 5 N -0.555 5.555 6 C 0.108 3.892 7 C -0.112 4.112 8 H 0.146 0.854 9 C 0.452 3.548 10 O -0.616 6.616 11 N -0.448 5.448 12 C -0.333 4.333 13 H 0.078 0.922 14 C 0.010 3.990 15 N -0.893 5.893 16 Si 0.981 3.019 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.289 1.289 20 C 0.215 3.785 21 C 0.257 3.743 22 N -0.509 5.509 23 C -0.129 4.129 24 C 0.521 3.479 25 O -0.552 6.552 26 C -0.128 4.128 27 C -0.111 4.111 28 C 0.050 3.950 29 F -0.144 7.144 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.148 0.852 36 H 0.275 0.725 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.088 0.912 40 H 0.152 0.848 41 H 0.172 0.828 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 -13.942 -11.561 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.177 4.177 4 C 0.058 3.942 5 N -0.277 5.277 6 C -0.013 4.013 7 C -0.133 4.133 8 H 0.163 0.837 9 C 0.242 3.758 10 O -0.501 6.501 11 N -0.167 5.167 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.192 4.192 15 N -0.532 5.532 16 Si 0.806 3.194 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.215 1.215 20 C 0.089 3.911 21 C -0.061 4.061 22 N -0.190 5.190 23 C -0.170 4.170 24 C 0.312 3.688 25 O -0.431 6.431 26 C -0.148 4.148 27 C -0.130 4.130 28 C 0.030 3.970 29 F -0.123 7.123 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.156 0.844 34 H 0.121 0.879 35 H 0.166 0.834 36 H 0.085 0.915 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.106 0.894 40 H 0.169 0.831 41 H 0.189 0.811 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.582 -12.207 -11.778 17.337 hybrid contribution -0.301 0.110 1.743 1.772 sum -3.883 -12.096 -10.035 16.190 Atomic orbital electron populations 1.20771 0.89050 1.03826 1.03370 1.19975 0.98056 0.91154 1.00856 1.21309 0.93255 0.99149 1.04037 1.18053 0.91119 0.85604 0.99417 1.45868 1.09724 1.04319 1.67823 1.22605 0.77659 0.95000 1.06029 1.22301 1.01400 0.97467 0.92159 0.83657 1.20674 0.83541 0.81751 0.89882 1.90585 1.35546 1.54419 1.69550 1.43743 1.04273 1.62821 1.05830 1.19561 0.96593 1.48283 0.81627 0.90434 1.25740 0.95100 0.94890 1.03468 1.69861 1.04487 1.41004 1.37869 0.85160 0.76958 0.79134 0.78126 1.18601 1.20255 1.21550 1.19331 0.88645 0.85766 0.97361 1.29860 0.91582 0.95559 0.89103 1.80937 1.10751 1.12396 1.14896 1.22243 0.92529 0.96869 1.05311 1.21396 0.88925 0.85060 0.73441 1.90562 1.17313 1.84685 1.50546 1.20966 1.01870 0.88649 1.03289 1.21231 0.91402 1.00302 1.00100 1.17660 0.90866 0.80574 1.07933 1.91446 1.80503 1.45941 1.94387 0.90291 0.90675 0.90106 0.84414 0.87949 0.83402 0.91452 0.84788 0.83621 0.89384 0.83058 0.81078 0.81269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 9.83 71.24 0.70 -1.71 16 2 C -0.10 -2.53 5.88 -19.84 -0.12 -2.64 16 3 C -0.16 -4.64 8.93 22.39 0.20 -4.44 16 4 C 0.15 4.01 6.59 38.12 0.25 4.26 16 5 N -0.56 -14.65 3.14 -627.62 -1.97 -16.62 16 6 C 0.11 1.99 5.68 86.83 0.49 2.48 16 7 C -0.11 -2.79 2.57 -10.48 -0.03 -2.82 16 8 H 0.15 2.72 6.12 -2.39 -0.01 2.71 16 9 C 0.45 17.61 6.59 87.66 0.58 18.19 16 10 O -0.62 -30.76 15.65 -3.06 -0.05 -30.81 16 11 N -0.45 -18.01 2.61 -645.41 -1.68 -19.69 16 12 C -0.33 -15.96 9.37 84.04 0.79 -15.18 16 13 H 0.08 4.13 7.37 -2.91 -0.02 4.11 16 14 C 0.01 0.45 5.06 84.93 0.43 0.88 16 15 N -0.89 -40.51 9.11 21.66 0.20 -40.31 16 16 Si 0.98 38.22 29.58 68.60 2.03 40.25 16 17 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 18 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 19 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.22 6.69 4.78 84.58 0.40 7.09 16 21 C 0.26 9.48 13.04 89.45 1.17 10.65 16 22 N -0.51 -21.19 18.53 20.00 0.37 -20.82 16 23 C -0.13 -3.51 6.08 30.59 0.19 -3.32 16 24 C 0.52 16.66 7.84 87.90 0.69 17.35 16 25 O -0.55 -21.33 14.84 -3.06 -0.05 -21.38 16 26 C -0.13 -2.43 9.41 22.39 0.21 -2.22 16 27 C -0.11 -2.07 10.02 22.30 0.22 -1.85 16 28 C 0.05 1.15 7.24 22.38 0.16 1.31 16 29 F -0.14 -3.32 16.47 44.97 0.74 -2.58 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 32 H 0.08 1.49 7.64 -2.39 -0.02 1.47 16 33 H 0.14 4.77 5.29 -2.91 -0.02 4.75 16 34 H 0.10 1.80 7.50 -2.39 -0.02 1.78 16 35 H 0.15 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.28 12.22 8.31 -92.71 -0.77 11.45 16 37 H 0.13 4.49 6.12 -2.39 -0.01 4.48 16 38 H 0.15 2.57 6.65 -2.39 -0.02 2.56 16 39 H 0.09 2.97 7.51 -2.39 -0.02 2.95 16 40 H 0.15 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.17 2.01 7.05 -2.91 -0.02 1.99 16 42 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -73.77 360.25 7.02 -66.75 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.09 Total: 17.17 kcal Atomic # 6 Polarization: 21.70 SS G_CDS: 6.34 Total: 28.04 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -3.09 Total: -97.44 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.09 Total: -52.18 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.74 Total: -2.58 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -73.77 7.02 -66.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180623438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.674 kcal (2) G-P(sol) polarization free energy of solvation -73.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds