Wall clock time and date at job start Sat Apr 11 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47242 * 2 1 4 4 H 1.08995 * 109.47409 * 54.99728 * 3 2 1 5 5 C 1.50704 * 109.47181 * 175.00052 * 3 2 1 6 6 H 1.08003 * 119.99597 * 119.99927 * 5 3 2 7 7 C 1.37873 * 119.99625 * 299.72488 * 5 3 2 8 8 N 1.31511 * 120.00376 * 0.27412 * 7 5 3 9 9 Si 1.86807 * 119.99733 * 180.27700 * 7 5 3 10 10 H 1.48499 * 109.47281 * 89.99611 * 9 7 5 11 11 H 1.48495 * 109.46915 * 210.00053 * 9 7 5 12 12 H 1.48500 * 109.46823 * 329.99692 * 9 7 5 13 13 N 1.46505 * 109.47073 * 294.99897 * 3 2 1 14 14 C 1.34774 * 119.99908 * 85.00038 * 13 3 2 15 15 O 1.21554 * 120.00057 * 359.97438 * 14 13 3 16 16 C 1.47864 * 120.00042 * 180.02562 * 14 13 3 17 17 C 1.41518 * 119.89932 * 179.97438 * 16 14 13 18 18 C 1.36411 * 118.23165 * 179.97438 * 17 16 14 19 19 C 1.41164 * 117.94673 * 0.02562 * 18 17 16 20 20 O 1.21989 * 120.21690 * 179.97438 * 19 18 17 21 21 N 1.34609 * 119.57092 * 359.97438 * 19 18 17 22 22 C 1.39877 * 119.10052 * 180.02562 * 21 19 18 23 23 C 1.38925 * 120.05327 * 228.57173 * 22 21 19 24 24 C 1.38068 * 119.95178 * 179.79057 * 23 22 21 25 25 C 1.38509 * 120.05116 * 0.48623 * 24 23 22 26 26 F 1.35091 * 119.95409 * 179.76507 * 25 24 23 27 27 C 1.38520 * 120.09818 * 359.74309 * 25 24 23 28 28 C 1.38070 * 120.04536 * 0.02562 * 27 25 24 29 29 N 1.28389 * 121.80035 * 359.71957 * 21 19 18 30 30 H 1.08998 * 109.46917 * 299.99938 * 1 2 3 31 31 H 1.09001 * 109.47036 * 60.00471 * 1 2 3 32 32 H 1.09005 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47272 * 239.99666 * 2 1 3 34 34 H 1.08998 * 109.46977 * 120.00054 * 2 1 3 35 35 H 0.97005 * 120.00182 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00123 * 265.00044 * 13 3 2 37 37 H 1.07996 * 120.88489 * 359.97173 * 17 16 14 38 38 H 1.08005 * 121.02501 * 180.02562 * 18 17 16 39 39 H 1.08002 * 120.02260 * 0.02727 * 23 22 21 40 40 H 1.08005 * 119.97319 * 180.20736 * 24 23 22 41 41 H 1.07997 * 119.97671 * 179.97438 * 27 25 24 42 42 H 1.08007 * 120.02034 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1430 0.8834 1.2307 8 7 3.4060 0.3421 2.1758 9 14 6.0045 0.8925 1.3878 10 1 6.4361 2.1288 2.0881 11 1 6.4413 -0.2950 2.1651 12 1 6.6156 0.8508 0.0351 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3670 15 8 -0.3412 2.6318 -0.4324 16 6 0.0439 3.3250 -2.6307 17 6 -1.2351 3.9191 -2.7494 18 6 -1.5604 4.5197 -3.9302 19 6 -0.5990 4.5110 -4.9638 20 8 -0.8466 5.0357 -6.0369 21 7 0.5927 3.9201 -4.7576 22 6 1.5383 3.9178 -5.7884 23 6 2.1813 2.7376 -6.1399 24 6 3.1111 2.7368 -7.1606 25 6 3.4104 3.9135 -7.8272 26 9 4.3239 3.9114 -8.8223 27 6 2.7739 5.0924 -7.4752 28 6 1.8399 5.0969 -6.4583 29 7 0.8874 3.3636 -3.6388 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8289 -0.0522 2.9547 36 1 2.2720 2.1231 -1.9978 37 1 -1.9349 3.8975 -1.9271 38 1 -2.5239 4.9874 -4.0699 39 1 1.9513 1.8206 -5.6178 40 1 3.6088 1.8188 -7.4364 41 1 3.0090 6.0089 -7.9959 42 1 1.3442 6.0164 -6.1839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183868103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:01 Heat of formation + Delta-G solvation = -13.534071 kcal Electronic energy + Delta-G solvation = -29543.859511 eV Core-core repulsion = 25212.443928 eV Total energy + Delta-G solvation = -4331.415582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.23983 -42.67913 -39.55705 -38.88952 -37.89869 -35.45202 -34.76616 -32.70805 -31.82902 -31.61736 -30.88518 -29.80699 -27.17790 -25.95110 -24.86925 -23.49620 -23.09087 -22.54977 -21.21182 -19.61221 -19.03528 -18.64408 -17.97670 -17.29233 -17.18824 -16.75357 -16.02998 -15.90768 -15.88051 -15.40036 -14.86152 -14.70277 -14.53695 -14.18370 -14.02899 -13.74170 -13.66544 -13.47647 -13.20798 -13.06215 -12.78613 -12.72942 -12.13266 -11.75436 -11.64537 -11.49583 -11.31592 -11.04417 -10.91872 -10.84235 -10.41024 -10.27456 -10.11289 -9.73921 -9.53947 -9.48822 -9.33600 -9.13984 -8.57380 -8.53001 -7.98646 -6.18571 -4.28108 0.04420 0.72117 0.81658 1.05845 1.78836 2.81649 3.09014 3.21750 3.28961 3.30379 3.55937 3.69922 3.84951 3.99112 4.30203 4.35321 4.40430 4.47643 4.56570 4.74616 4.89135 4.92438 5.10209 5.14153 5.46032 5.47971 5.63495 5.67183 5.68939 5.71906 5.85851 5.92566 6.31333 6.36754 6.41533 6.56057 6.95035 7.08348 7.19972 7.25547 7.28939 7.51736 7.62536 7.73631 7.81412 8.08603 8.47846 8.64725 8.89775 9.39031 10.86800 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.003408 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.643572 B = 8214.726018 C =10447.961172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.681 5.681 14 C 0.568 3.432 15 O -0.532 6.532 16 C 0.043 3.957 17 C -0.026 4.026 18 C -0.194 4.194 19 C 0.482 3.518 20 O -0.521 6.521 21 N -0.293 5.293 22 C 0.108 3.892 23 C -0.063 4.063 24 C -0.143 4.143 25 C 0.111 3.889 26 F -0.135 7.135 27 C -0.143 4.143 28 C -0.056 4.056 29 N -0.189 5.189 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.025 0.975 33 H 0.033 0.967 34 H 0.102 0.898 35 H 0.265 0.735 36 H 0.398 0.602 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 6.323 -16.084 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.328 5.328 14 C 0.349 3.651 15 O -0.408 6.408 16 C -0.130 4.130 17 C -0.049 4.049 18 C -0.224 4.224 19 C 0.281 3.719 20 O -0.398 6.398 21 N -0.109 5.109 22 C 0.019 3.981 23 C -0.083 4.083 24 C -0.162 4.162 25 C 0.091 3.909 26 F -0.113 7.113 27 C -0.163 4.163 28 C -0.076 4.076 29 N -0.016 5.016 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.231 0.769 37 H 0.185 0.815 38 H 0.188 0.812 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.292 6.232 -16.103 17.792 hybrid contribution 0.607 0.277 -0.239 0.708 sum -3.686 6.509 -16.342 17.973 Atomic orbital electron populations 1.21859 0.98308 0.98308 1.01152 1.21951 0.92633 0.99524 1.02588 1.18942 0.94584 0.89329 0.80396 0.92838 1.21202 0.90469 1.39422 1.06336 0.91919 1.24856 0.98641 0.94660 0.95313 1.69881 1.35215 1.37556 1.09214 0.86455 0.84761 0.77692 0.78267 1.20538 1.21045 1.19794 1.46491 1.13702 1.53544 1.19043 1.17179 0.83818 0.79742 0.84361 1.90812 1.51703 1.60391 1.37876 1.22499 0.92749 1.03348 0.94433 1.22401 0.95145 0.89087 0.98261 1.22642 1.01628 1.05464 0.92646 1.18162 0.82294 0.80917 0.90496 1.90979 1.77579 1.45115 1.26100 1.43881 1.13628 1.44332 1.09036 1.17559 0.94199 0.95077 0.91228 1.20968 0.94724 0.97201 0.95378 1.21040 1.00055 0.98049 0.97059 1.17809 0.90094 0.94817 0.88146 1.91524 1.64034 1.97269 1.58476 1.20989 0.97977 0.97975 0.99343 1.20888 0.95092 0.97062 0.94565 1.71344 1.29312 1.08842 0.92144 0.92950 0.94450 0.95638 0.94816 0.88030 0.92474 0.76855 0.81477 0.81160 0.83630 0.83436 0.83624 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.51 37.16 0.32 -2.53 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.05 16 3 C 0.27 6.30 2.24 -69.08 -0.15 6.14 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.44 8.73 -34.44 -0.30 -13.74 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 8 N -0.88 -23.57 11.30 55.43 0.63 -22.95 16 9 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 N -0.68 -13.18 5.01 -55.87 -0.28 -13.46 16 14 C 0.57 10.22 6.37 -12.32 -0.08 10.15 16 15 O -0.53 -10.81 13.52 5.32 0.07 -10.74 16 16 C 0.04 0.62 6.84 -82.82 -0.57 0.05 16 17 C -0.03 -0.30 9.68 -38.99 -0.38 -0.68 16 18 C -0.19 -2.12 10.11 -39.13 -0.40 -2.52 16 19 C 0.48 6.43 7.22 -15.22 -0.11 6.32 16 20 O -0.52 -7.90 15.58 4.93 0.08 -7.82 16 21 N -0.29 -3.87 3.35 -12.56 -0.04 -3.91 16 22 C 0.11 1.32 5.56 -83.68 -0.47 0.85 16 23 C -0.06 -0.67 9.65 -39.39 -0.38 -1.05 16 24 C -0.14 -1.33 10.02 -39.54 -0.40 -1.73 16 25 C 0.11 1.09 7.30 -39.38 -0.29 0.80 16 26 F -0.13 -1.37 17.26 2.25 0.04 -1.33 16 27 C -0.14 -1.35 10.02 -39.54 -0.40 -1.74 16 28 C -0.06 -0.61 8.65 -39.39 -0.34 -0.95 16 29 N -0.19 -2.63 9.78 33.41 0.33 -2.30 16 30 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 31 H 0.04 0.73 5.64 -51.93 -0.29 0.44 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 2.57 5.96 -51.93 -0.31 2.26 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.40 7.04 7.87 -40.82 -0.32 6.72 16 37 H 0.17 1.70 7.72 -52.49 -0.41 1.29 16 38 H 0.17 1.39 8.06 -52.48 -0.42 0.96 16 39 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.14 1.51 7.36 -52.48 -0.39 1.12 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -29.16 362.85 -7.50 -36.66 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.59 Total: 7.50 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -4.17 Total: -2.01 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.63 Total: -42.62 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.15 Total: -18.56 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.16 -7.50 -36.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183868103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.125 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds