Wall clock time and date at job start Sat Apr 11 2020 07:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47242 * 2 1 4 4 H 1.08995 * 109.47409 * 54.99728 * 3 2 1 5 5 C 1.50704 * 109.47181 * 175.00052 * 3 2 1 6 6 H 1.08003 * 119.99597 * 119.99927 * 5 3 2 7 7 C 1.37873 * 119.99625 * 299.72488 * 5 3 2 8 8 N 1.31511 * 120.00376 * 0.27412 * 7 5 3 9 9 Si 1.86807 * 119.99733 * 180.27700 * 7 5 3 10 10 H 1.48499 * 109.47281 * 89.99611 * 9 7 5 11 11 H 1.48495 * 109.46915 * 210.00053 * 9 7 5 12 12 H 1.48500 * 109.46823 * 329.99692 * 9 7 5 13 13 N 1.46505 * 109.47073 * 294.99897 * 3 2 1 14 14 C 1.34774 * 119.99908 * 85.00038 * 13 3 2 15 15 O 1.21554 * 120.00057 * 359.97438 * 14 13 3 16 16 C 1.47864 * 120.00042 * 180.02562 * 14 13 3 17 17 C 1.41518 * 119.89932 * 179.97438 * 16 14 13 18 18 C 1.36411 * 118.23165 * 179.97438 * 17 16 14 19 19 C 1.41164 * 117.94673 * 0.02562 * 18 17 16 20 20 O 1.21989 * 120.21690 * 179.97438 * 19 18 17 21 21 N 1.34609 * 119.57092 * 359.97438 * 19 18 17 22 22 C 1.39877 * 119.10052 * 180.02562 * 21 19 18 23 23 C 1.38925 * 120.05327 * 228.57173 * 22 21 19 24 24 C 1.38068 * 119.95178 * 179.79057 * 23 22 21 25 25 C 1.38509 * 120.05116 * 0.48623 * 24 23 22 26 26 F 1.35091 * 119.95409 * 179.76507 * 25 24 23 27 27 C 1.38520 * 120.09818 * 359.74309 * 25 24 23 28 28 C 1.38070 * 120.04536 * 0.02562 * 27 25 24 29 29 N 1.28389 * 121.80035 * 359.71957 * 21 19 18 30 30 H 1.08998 * 109.46917 * 299.99938 * 1 2 3 31 31 H 1.09001 * 109.47036 * 60.00471 * 1 2 3 32 32 H 1.09005 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47272 * 239.99666 * 2 1 3 34 34 H 1.08998 * 109.46977 * 120.00054 * 2 1 3 35 35 H 0.97005 * 120.00182 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00123 * 265.00044 * 13 3 2 37 37 H 1.07996 * 120.88489 * 359.97173 * 17 16 14 38 38 H 1.08005 * 121.02501 * 180.02562 * 18 17 16 39 39 H 1.08002 * 120.02260 * 0.02727 * 23 22 21 40 40 H 1.08005 * 119.97319 * 180.20736 * 24 23 22 41 41 H 1.07997 * 119.97671 * 179.97438 * 27 25 24 42 42 H 1.08007 * 120.02034 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1430 0.8834 1.2307 8 7 3.4060 0.3421 2.1758 9 14 6.0045 0.8925 1.3878 10 1 6.4361 2.1288 2.0881 11 1 6.4413 -0.2950 2.1651 12 1 6.6156 0.8508 0.0351 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3670 15 8 -0.3412 2.6318 -0.4324 16 6 0.0439 3.3250 -2.6307 17 6 -1.2351 3.9191 -2.7494 18 6 -1.5604 4.5197 -3.9302 19 6 -0.5990 4.5110 -4.9638 20 8 -0.8466 5.0357 -6.0369 21 7 0.5927 3.9201 -4.7576 22 6 1.5383 3.9178 -5.7884 23 6 2.1813 2.7376 -6.1399 24 6 3.1111 2.7368 -7.1606 25 6 3.4104 3.9135 -7.8272 26 9 4.3239 3.9114 -8.8223 27 6 2.7739 5.0924 -7.4752 28 6 1.8399 5.0969 -6.4583 29 7 0.8874 3.3636 -3.6388 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8289 -0.0522 2.9547 36 1 2.2720 2.1231 -1.9978 37 1 -1.9349 3.8975 -1.9271 38 1 -2.5239 4.9874 -4.0699 39 1 1.9513 1.8206 -5.6178 40 1 3.6088 1.8188 -7.4364 41 1 3.0090 6.0089 -7.9959 42 1 1.3442 6.0164 -6.1839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183868103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:00 Heat of formation + Delta-G solvation = -30.203823 kcal Electronic energy + Delta-G solvation = -29544.582365 eV Core-core repulsion = 25212.443928 eV Total energy + Delta-G solvation = -4332.138437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.02412 -43.70194 -40.89770 -39.85156 -39.03797 -37.06164 -35.87005 -34.39985 -33.21816 -32.45868 -32.27489 -30.80211 -28.95100 -27.06854 -25.89275 -24.99986 -24.16079 -23.52260 -22.59645 -21.32283 -20.17474 -19.81878 -18.80571 -18.58706 -18.19904 -17.77750 -17.50817 -17.19255 -16.84150 -16.69027 -16.25260 -16.19552 -15.60078 -15.36068 -14.89919 -14.79518 -14.61346 -14.56593 -14.47746 -14.24909 -14.11738 -13.83708 -13.54815 -13.37755 -13.14493 -12.88780 -12.81351 -12.66968 -12.32527 -12.15064 -12.03576 -11.80352 -11.54371 -11.24880 -11.02728 -10.92800 -10.50728 -10.30731 -10.28365 -9.72328 -9.43499 -8.13857 -6.29992 -0.90889 -0.17347 -0.01226 0.04898 0.79116 1.46809 1.48243 1.57608 1.69994 2.16138 2.26934 2.43853 2.48947 2.91526 3.07593 3.16455 3.47137 3.57825 3.60671 3.68028 3.78289 3.98404 4.12575 4.14200 4.45448 4.56142 4.63047 4.74512 4.74838 4.79598 4.82015 4.90457 4.91788 4.99613 5.07090 5.11763 5.31790 5.47006 5.53286 5.62546 5.63456 5.81950 5.90817 6.19386 6.22467 6.64280 6.75675 6.89955 7.28635 7.45189 8.91230 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.003408 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.643572 B = 8214.726018 C =10447.961172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.011 0.989 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.963 3.037 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.263 1.263 13 N -0.683 5.683 14 C 0.572 3.428 15 O -0.556 6.556 16 C 0.036 3.964 17 C -0.025 4.025 18 C -0.175 4.175 19 C 0.473 3.527 20 O -0.541 6.541 21 N -0.288 5.288 22 C 0.081 3.919 23 C -0.068 4.068 24 C -0.137 4.137 25 C 0.107 3.893 26 F -0.135 7.135 27 C -0.137 4.137 28 C -0.064 4.064 29 N -0.190 5.190 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.265 0.735 36 H 0.406 0.594 37 H 0.184 0.816 38 H 0.203 0.797 39 H 0.150 0.850 40 H 0.170 0.830 41 H 0.169 0.831 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 6.712 -17.913 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.029 0.971 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.789 3.211 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.188 1.188 13 N -0.331 5.331 14 C 0.355 3.645 15 O -0.434 6.434 16 C -0.137 4.137 17 C -0.048 4.048 18 C -0.205 4.205 19 C 0.274 3.726 20 O -0.420 6.420 21 N -0.104 5.104 22 C -0.008 4.008 23 C -0.088 4.088 24 C -0.156 4.156 25 C 0.087 3.913 26 F -0.114 7.114 27 C -0.156 4.156 28 C -0.084 4.084 29 N -0.018 5.018 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.242 0.758 37 H 0.201 0.799 38 H 0.220 0.780 39 H 0.168 0.832 40 H 0.187 0.813 41 H 0.186 0.814 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.014 6.630 -17.956 19.557 hybrid contribution 0.542 0.197 0.233 0.622 sum -3.472 6.827 -17.724 19.308 Atomic orbital electron populations 1.21707 0.96636 0.99433 1.00557 1.21799 0.94064 0.98780 1.01468 1.18515 0.93728 0.89450 0.80791 0.97100 1.21537 0.91479 1.39137 1.06523 0.91359 1.25636 1.02762 0.94383 0.95070 1.70017 1.36864 1.38330 1.09681 0.85477 0.79779 0.77406 0.78480 1.20554 1.20968 1.18751 1.46233 1.14725 1.54123 1.18039 1.17473 0.82808 0.78917 0.85288 1.90798 1.52226 1.61069 1.39287 1.21967 0.94145 1.04374 0.93175 1.22451 0.94156 0.89033 0.99157 1.22907 1.02082 1.04290 0.91183 1.18580 0.82577 0.80680 0.90803 1.90970 1.77954 1.46084 1.26988 1.43974 1.13982 1.43627 1.08778 1.17903 0.95017 0.96191 0.91662 1.21075 0.94911 0.96950 0.95849 1.21270 0.99319 0.98872 0.96151 1.17937 0.90049 0.95160 0.88113 1.91526 1.64062 1.97287 1.58510 1.21210 0.96941 0.98882 0.98611 1.20953 0.95648 0.96729 0.95063 1.71262 1.29326 1.08843 0.92359 0.94813 0.93670 0.93583 0.94118 0.90767 0.92553 0.75846 0.79863 0.78006 0.83186 0.81258 0.81354 0.84219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.51 71.98 0.61 -4.56 16 2 C -0.12 -5.62 5.45 30.59 0.17 -5.45 16 3 C 0.28 13.33 2.24 44.24 0.10 13.43 16 4 H 0.01 0.62 7.58 -2.39 -0.02 0.61 16 5 C -0.55 -27.77 8.73 25.60 0.22 -27.54 16 6 H 0.07 3.29 7.74 -2.91 -0.02 3.27 16 7 C 0.02 1.14 5.30 84.65 0.45 1.59 16 8 N -0.91 -49.79 11.30 21.45 0.24 -49.55 16 9 Si 0.96 40.79 29.54 68.60 2.03 42.81 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 13 N -0.68 -26.62 5.01 -448.95 -2.25 -28.87 16 14 C 0.57 20.55 6.37 86.79 0.55 21.11 16 15 O -0.56 -22.80 13.52 -3.89 -0.05 -22.85 16 16 C 0.04 0.99 6.84 42.55 0.29 1.28 16 17 C -0.02 -0.54 9.68 22.65 0.22 -0.32 16 18 C -0.18 -3.42 10.11 22.56 0.23 -3.19 16 19 C 0.47 11.90 7.22 84.99 0.61 12.52 16 20 O -0.54 -15.70 15.58 -5.28 -0.08 -15.78 16 21 N -0.29 -7.29 3.35 -311.84 -1.05 -8.33 16 22 C 0.08 1.88 5.56 38.19 0.21 2.09 16 23 C -0.07 -1.36 9.65 22.39 0.22 -1.14 16 24 C -0.14 -2.29 10.02 22.29 0.22 -2.07 16 25 C 0.11 1.89 7.30 22.40 0.16 2.05 16 26 F -0.14 -2.47 17.26 44.97 0.78 -1.69 16 27 C -0.14 -2.33 10.02 22.30 0.22 -2.11 16 28 C -0.06 -1.33 8.65 22.40 0.19 -1.13 16 29 N -0.19 -5.10 9.78 -48.20 -0.47 -5.57 16 30 H 0.03 1.48 7.84 -2.39 -0.02 1.46 16 31 H 0.04 1.75 5.64 -2.39 -0.01 1.74 16 32 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 3.86 5.96 -2.39 -0.01 3.84 16 35 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 36 H 0.41 14.31 7.87 -92.71 -0.73 13.58 16 37 H 0.18 3.36 7.72 -2.91 -0.02 3.34 16 38 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.14 2.88 7.36 -2.91 -0.02 2.86 16 Total: -1.00 -63.29 362.85 4.19 -59.10 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.36 Total: 24.18 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 4.69 Total: 6.55 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -3.52 Total: -92.32 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.13 Total: -38.64 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -63.29 4.19 -59.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183868103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.896 kcal (2) G-P(sol) polarization free energy of solvation -63.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds