Wall clock time and date at job start Sat Apr 11 2020 07:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38074 * 126.31161 * 2 1 4 4 C 1.47412 * 126.41004 * 359.96020 * 3 2 1 5 5 O 1.21603 * 120.00164 * 359.71780 * 4 3 2 6 6 N 1.34783 * 120.00019 * 179.97438 * 4 3 2 7 7 C 1.47071 * 136.05415 * 359.35257 * 6 4 3 8 8 C 1.53232 * 88.07913 * 207.20475 * 7 6 4 9 9 O 1.42897 * 114.19990 * 87.72904 * 8 7 6 10 10 C 1.50708 * 114.32763 * 220.47160 * 8 7 6 11 11 H 1.07999 * 119.99939 * 93.75202 * 10 8 7 12 12 C 1.37875 * 119.99758 * 273.75985 * 10 8 7 13 13 N 1.31518 * 120.00429 * 0.02562 * 12 10 8 14 14 Si 1.86807 * 119.99903 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46623 * 60.00646 * 14 12 10 16 16 H 1.48496 * 109.46808 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47140 * 300.00467 * 14 12 10 18 18 C 1.47060 * 136.05734 * 179.72088 * 6 4 3 19 19 C 1.41323 * 107.18207 * 180.22182 * 3 2 1 20 20 N 1.30485 * 108.05767 * 359.59079 * 19 3 2 21 21 N 1.34519 * 126.30467 * 179.97438 * 2 1 3 22 22 C 1.40219 * 125.77161 * 0.02562 * 21 2 1 23 23 C 1.38798 * 120.07845 * 47.60062 * 22 21 2 24 24 C 1.38133 * 119.95468 * 179.74461 * 23 22 21 25 25 C 1.38295 * 120.11154 * 0.53818 * 24 23 22 26 26 C 1.38239 * 120.15587 * 359.74048 * 25 24 23 27 27 C 1.38339 * 120.04302 * 359.97438 * 26 25 24 28 28 F 1.35098 * 120.05488 * 180.02562 * 27 26 25 29 29 H 1.09006 * 109.47087 * 84.66993 * 1 2 3 30 30 H 1.08996 * 109.47330 * 204.67110 * 1 2 3 31 31 H 1.09005 * 109.46989 * 324.67283 * 1 2 3 32 32 H 1.08996 * 113.46492 * 321.93639 * 7 6 4 33 33 H 1.09003 * 113.46514 * 92.37565 * 7 6 4 34 34 H 0.96703 * 113.99966 * 86.30314 * 9 8 7 35 35 H 0.96990 * 120.00224 * 179.97438 * 13 12 10 36 36 H 1.08995 * 113.46984 * 267.62216 * 18 6 4 37 37 H 1.09000 * 113.46609 * 38.01052 * 18 6 4 38 38 H 1.07994 * 125.97208 * 179.76156 * 19 3 2 39 39 H 1.08002 * 120.02275 * 0.02985 * 23 22 21 40 40 H 1.08003 * 119.94202 * 180.27242 * 24 23 22 41 41 H 1.08005 * 119.91581 * 179.76169 * 25 24 23 42 42 H 1.08003 * 119.97539 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1126 0.0000 4 6 1.8869 2.5202 -0.0008 5 8 0.7007 2.7880 -0.0068 6 7 2.8013 3.5104 -0.0002 7 6 4.2694 3.5960 0.0128 8 6 4.1325 4.9582 0.7009 9 8 4.0526 4.8893 2.1259 10 6 5.1011 6.0026 0.2085 11 1 4.8081 6.6831 -0.5774 12 6 6.3612 6.0893 0.7611 13 7 6.7183 5.2602 1.7177 14 14 7.5621 7.3833 0.1503 15 1 6.9837 8.7345 0.3624 16 1 8.8384 7.2674 0.9004 17 1 7.8187 7.1763 -1.2975 18 6 2.7699 4.9807 -0.0056 19 6 3.6599 0.6495 -0.0052 20 7 3.6355 -0.6551 0.0007 21 7 2.3035 -1.0841 0.0005 22 6 1.8720 -2.4182 0.0006 23 6 0.8876 -2.8310 -0.8867 24 6 0.4682 -4.1471 -0.8880 25 6 1.0195 -5.0519 0.0009 26 6 1.9960 -4.6444 0.8905 27 6 2.4251 -3.3292 0.8933 28 9 3.3798 -2.9309 1.7623 29 1 -0.3633 0.0955 -1.0233 30 1 -0.3634 -0.9338 0.4289 31 1 -0.3633 0.8385 0.5943 32 1 4.7427 2.8403 0.6396 33 1 4.7096 3.6546 -0.9827 34 1 4.9126 4.8754 2.5679 35 1 7.6049 5.3210 2.1062 36 1 2.8067 5.4120 -1.0059 37 1 1.9703 5.4000 0.6050 38 1 4.5456 1.2674 -0.0102 39 1 0.4532 -2.1247 -1.5787 40 1 -0.2946 -4.4691 -1.5814 41 1 0.6864 -6.0793 -0.0003 42 1 2.4248 -5.3535 1.5831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186810685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:05 Heat of formation + Delta-G solvation = 24.996305 kcal Electronic energy + Delta-G solvation = -29671.144886 eV Core-core repulsion = 25341.400106 eV Total energy + Delta-G solvation = -4329.744780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.12843 -41.68745 -39.54072 -39.05193 -37.17103 -34.15546 -33.82853 -32.16798 -32.12548 -31.08241 -29.77117 -28.58335 -27.13077 -25.29610 -25.23275 -23.72351 -23.32921 -21.92013 -20.70800 -19.73254 -18.37210 -18.02415 -17.57767 -17.13462 -16.85891 -16.07647 -15.76413 -15.50615 -15.26368 -15.20492 -14.92179 -14.67265 -14.41072 -14.17083 -14.03013 -13.50615 -13.21612 -13.14540 -12.93014 -12.68113 -12.57003 -12.42149 -12.34086 -12.19554 -11.91988 -11.73348 -11.53252 -11.04813 -10.97009 -10.84206 -10.47158 -10.23494 -10.17609 -9.61371 -9.38649 -9.17782 -8.99438 -8.75646 -8.47658 -8.34193 -7.76485 -6.38351 -4.48888 0.39588 0.65214 1.64207 2.12434 2.36445 3.02586 3.17668 3.23849 3.25722 3.63978 3.72868 3.90563 4.19627 4.21782 4.36590 4.46764 4.63526 4.71737 4.82257 4.84372 4.95720 5.13106 5.28956 5.45488 5.47769 5.51437 5.55284 5.63937 5.66311 5.79528 5.83034 5.95646 6.02494 6.21559 6.23028 6.44076 6.45909 6.52998 6.68789 6.77229 6.93635 7.13377 7.54930 7.64759 7.82319 8.52633 8.56662 8.85730 9.22523 9.51859 10.68208 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.002611 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.274785 B =10722.093411 C =11582.187733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.151 3.849 3 C -0.266 4.266 4 C 0.615 3.385 5 O -0.568 6.568 6 N -0.629 5.629 7 C 0.067 3.933 8 C 0.241 3.759 9 O -0.571 6.571 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.909 3.091 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.111 3.889 19 C 0.093 3.907 20 N -0.289 5.289 21 N -0.327 5.327 22 C 0.117 3.883 23 C -0.093 4.093 24 C -0.114 4.114 25 C -0.088 4.088 26 C -0.143 4.143 27 C 0.116 3.884 28 F -0.120 7.120 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.394 0.606 35 H 0.275 0.725 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.202 0.798 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 -19.388 -4.641 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.023 3.977 3 C -0.279 4.279 4 C 0.406 3.594 5 O -0.450 6.450 6 N -0.361 5.361 7 C -0.056 4.056 8 C 0.199 3.801 9 O -0.384 6.384 10 C -0.572 4.572 11 H 0.090 0.910 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.736 3.264 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.011 4.011 19 C -0.095 4.095 20 N -0.105 5.105 21 N -0.103 5.103 22 C 0.025 3.975 23 C -0.113 4.113 24 C -0.133 4.133 25 C -0.107 4.107 26 C -0.162 4.162 27 C 0.095 3.905 28 F -0.098 7.098 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.250 0.750 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.218 0.782 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.084 -20.573 -4.584 23.366 hybrid contribution 1.333 1.319 -0.044 1.876 sum -8.751 -19.254 -4.629 21.650 Atomic orbital electron populations 1.20697 0.85879 1.04262 1.04444 1.21551 0.94863 0.85405 0.95858 1.20093 0.92648 0.93714 1.21489 1.16500 0.84243 0.82448 0.76221 1.90668 1.16168 1.84052 1.54157 1.49392 1.08782 1.07286 1.70604 1.24294 0.78105 1.02047 1.01185 1.19481 0.90157 0.90140 0.80368 1.86054 1.37745 1.96400 1.18171 1.21391 0.97474 1.17282 1.21021 0.90958 1.25078 0.98095 0.95620 0.94251 1.69253 1.21595 1.36976 1.25994 0.86371 0.79562 0.81506 0.78980 1.19847 1.21020 1.19887 1.23314 0.99591 0.78188 1.00038 1.24695 0.98288 0.91475 0.95074 1.77435 0.94093 1.13523 1.25433 1.45396 1.05073 1.02752 1.57032 1.17470 0.99819 0.81563 0.98691 1.21116 0.96370 0.97222 0.96632 1.21098 1.00637 0.91936 0.99607 1.21149 0.94984 1.00429 0.94100 1.21164 0.99574 0.93610 1.01844 1.17649 0.90233 0.93031 0.89609 1.91588 1.60680 1.91192 1.66356 0.89395 0.91324 0.87457 0.91537 0.89868 0.74984 0.91497 0.89663 0.91469 0.78177 0.84082 0.84145 0.84217 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 8.42 36.01 0.30 -0.89 16 2 C 0.15 2.43 6.83 -81.47 -0.56 1.87 16 3 C -0.27 -4.98 6.13 -105.05 -0.64 -5.62 16 4 C 0.62 13.05 8.06 -12.52 -0.10 12.95 16 5 O -0.57 -12.85 15.75 5.27 0.08 -12.77 16 6 N -0.63 -13.51 3.69 -186.66 -0.69 -14.20 16 7 C 0.07 1.42 6.48 -8.64 -0.06 1.36 16 8 C 0.24 5.73 1.57 -91.39 -0.14 5.59 16 9 O -0.57 -14.79 13.54 -35.23 -0.48 -15.27 16 10 C -0.53 -13.18 8.69 -34.44 -0.30 -13.48 16 11 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 12 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 13 N -0.90 -22.62 11.01 55.43 0.61 -22.01 16 14 Si 0.91 19.31 29.54 -169.99 -5.02 14.29 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 18 C 0.11 2.41 8.04 -8.50 -0.07 2.35 16 19 C 0.09 1.68 11.13 -16.95 -0.19 1.49 16 20 N -0.29 -5.16 11.95 30.87 0.37 -4.79 16 21 N -0.33 -5.16 3.54 -6.46 -0.02 -5.19 16 22 C 0.12 1.47 5.90 -83.52 -0.49 0.98 16 23 C -0.09 -0.84 8.44 -39.41 -0.33 -1.17 16 24 C -0.11 -0.70 10.04 -39.60 -0.40 -1.10 16 25 C -0.09 -0.52 10.04 -39.56 -0.40 -0.92 16 26 C -0.14 -1.16 10.02 -39.54 -0.40 -1.56 16 27 C 0.12 1.41 7.28 -39.25 -0.29 1.12 16 28 F -0.12 -1.79 16.65 2.25 0.04 -1.76 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.69 7.08 -51.93 -0.37 0.32 16 31 H 0.11 1.55 6.81 -51.93 -0.35 1.20 16 32 H 0.07 1.41 6.21 -51.93 -0.32 1.09 16 33 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 34 H 0.39 10.31 6.33 45.56 0.29 10.60 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.20 3.43 5.24 -52.49 -0.28 3.16 16 39 H 0.14 1.11 7.43 -52.49 -0.39 0.72 16 40 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 41 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 42 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -31.03 361.33 -7.74 -38.76 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -3.92 Total: 12.82 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -4.15 Total: 4.67 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.27 Total: -46.19 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.39 Total: -28.04 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.03 -7.74 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186810685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.760 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds