Wall clock time and date at job start Sat Apr 11 2020 07:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38074 * 126.31161 * 2 1 4 4 C 1.47412 * 126.41004 * 359.96020 * 3 2 1 5 5 O 1.21603 * 120.00164 * 359.71780 * 4 3 2 6 6 N 1.34783 * 120.00019 * 179.97438 * 4 3 2 7 7 C 1.47071 * 136.05415 * 359.35257 * 6 4 3 8 8 C 1.53232 * 88.07913 * 207.20475 * 7 6 4 9 9 O 1.42897 * 114.19990 * 87.72904 * 8 7 6 10 10 C 1.50708 * 114.32763 * 220.47160 * 8 7 6 11 11 H 1.07999 * 119.99939 * 93.75202 * 10 8 7 12 12 C 1.37875 * 119.99758 * 273.75985 * 10 8 7 13 13 N 1.31518 * 120.00429 * 0.02562 * 12 10 8 14 14 Si 1.86807 * 119.99903 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46623 * 60.00646 * 14 12 10 16 16 H 1.48496 * 109.46808 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47140 * 300.00467 * 14 12 10 18 18 C 1.47060 * 136.05734 * 179.72088 * 6 4 3 19 19 C 1.41323 * 107.18207 * 180.22182 * 3 2 1 20 20 N 1.30485 * 108.05767 * 359.59079 * 19 3 2 21 21 N 1.34519 * 126.30467 * 179.97438 * 2 1 3 22 22 C 1.40219 * 125.77161 * 0.02562 * 21 2 1 23 23 C 1.38798 * 120.07845 * 47.60062 * 22 21 2 24 24 C 1.38133 * 119.95468 * 179.74461 * 23 22 21 25 25 C 1.38295 * 120.11154 * 0.53818 * 24 23 22 26 26 C 1.38239 * 120.15587 * 359.74048 * 25 24 23 27 27 C 1.38339 * 120.04302 * 359.97438 * 26 25 24 28 28 F 1.35098 * 120.05488 * 180.02562 * 27 26 25 29 29 H 1.09006 * 109.47087 * 84.66993 * 1 2 3 30 30 H 1.08996 * 109.47330 * 204.67110 * 1 2 3 31 31 H 1.09005 * 109.46989 * 324.67283 * 1 2 3 32 32 H 1.08996 * 113.46492 * 321.93639 * 7 6 4 33 33 H 1.09003 * 113.46514 * 92.37565 * 7 6 4 34 34 H 0.96703 * 113.99966 * 86.30314 * 9 8 7 35 35 H 0.96990 * 120.00224 * 179.97438 * 13 12 10 36 36 H 1.08995 * 113.46984 * 267.62216 * 18 6 4 37 37 H 1.09000 * 113.46609 * 38.01052 * 18 6 4 38 38 H 1.07994 * 125.97208 * 179.76156 * 19 3 2 39 39 H 1.08002 * 120.02275 * 0.02985 * 23 22 21 40 40 H 1.08003 * 119.94202 * 180.27242 * 24 23 22 41 41 H 1.08005 * 119.91581 * 179.76169 * 25 24 23 42 42 H 1.08003 * 119.97539 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1126 0.0000 4 6 1.8869 2.5202 -0.0008 5 8 0.7007 2.7880 -0.0068 6 7 2.8013 3.5104 -0.0002 7 6 4.2694 3.5960 0.0128 8 6 4.1325 4.9582 0.7009 9 8 4.0526 4.8893 2.1259 10 6 5.1011 6.0026 0.2085 11 1 4.8081 6.6831 -0.5774 12 6 6.3612 6.0893 0.7611 13 7 6.7183 5.2602 1.7177 14 14 7.5621 7.3833 0.1503 15 1 6.9837 8.7345 0.3624 16 1 8.8384 7.2674 0.9004 17 1 7.8187 7.1763 -1.2975 18 6 2.7699 4.9807 -0.0056 19 6 3.6599 0.6495 -0.0052 20 7 3.6355 -0.6551 0.0007 21 7 2.3035 -1.0841 0.0005 22 6 1.8720 -2.4182 0.0006 23 6 0.8876 -2.8310 -0.8867 24 6 0.4682 -4.1471 -0.8880 25 6 1.0195 -5.0519 0.0009 26 6 1.9960 -4.6444 0.8905 27 6 2.4251 -3.3292 0.8933 28 9 3.3798 -2.9309 1.7623 29 1 -0.3633 0.0955 -1.0233 30 1 -0.3634 -0.9338 0.4289 31 1 -0.3633 0.8385 0.5943 32 1 4.7427 2.8403 0.6396 33 1 4.7096 3.6546 -0.9827 34 1 4.9126 4.8754 2.5679 35 1 7.6049 5.3210 2.1062 36 1 2.8067 5.4120 -1.0059 37 1 1.9703 5.4000 0.6050 38 1 4.5456 1.2674 -0.0102 39 1 0.4532 -2.1247 -1.5787 40 1 -0.2946 -4.4691 -1.5814 41 1 0.6864 -6.0793 -0.0003 42 1 2.4248 -5.3535 1.5831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186810685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:04 Heat of formation + Delta-G solvation = 4.466458 kcal Electronic energy + Delta-G solvation = -29672.035127 eV Core-core repulsion = 25341.400106 eV Total energy + Delta-G solvation = -4330.635021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.08867 -42.93152 -41.11533 -39.93011 -38.87307 -35.90844 -35.00105 -34.10595 -33.28632 -31.74973 -31.09929 -29.88437 -28.49165 -27.04121 -26.90372 -24.64618 -24.19025 -23.27254 -21.88384 -21.27081 -19.93697 -19.39126 -18.91373 -18.34053 -17.71861 -17.32317 -17.25435 -16.87928 -16.67212 -16.56100 -16.22541 -15.89213 -15.79833 -15.47326 -15.10359 -14.90311 -14.58651 -14.36923 -14.10228 -14.03533 -13.86714 -13.74653 -13.52310 -13.38652 -13.27043 -12.98910 -12.75119 -12.72308 -12.45450 -12.21445 -12.14060 -12.11721 -11.36788 -11.20732 -10.93861 -10.63275 -10.24943 -10.17732 -10.00566 -9.65827 -9.40677 -8.25503 -6.42733 -0.41338 0.01868 0.46227 0.94701 1.03016 1.49874 1.51434 1.59090 2.00030 2.32313 2.40346 2.42943 2.96424 2.98277 3.31219 3.37928 3.59802 3.68376 3.77235 3.85134 3.99544 4.10942 4.16435 4.19456 4.21219 4.43160 4.50719 4.53079 4.65029 4.69168 4.79668 4.84670 4.87352 4.94735 4.98685 5.00247 5.12443 5.22537 5.26615 5.27214 5.57822 5.74429 5.91338 5.92504 6.25429 6.63292 6.86455 7.18642 7.31493 7.50077 8.80380 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.002611 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.274785 B =10722.093411 C =11582.187733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.164 3.836 3 C -0.303 4.303 4 C 0.613 3.387 5 O -0.589 6.589 6 N -0.633 5.633 7 C 0.082 3.918 8 C 0.219 3.781 9 O -0.587 6.587 10 C -0.550 4.550 11 H 0.077 0.923 12 C 0.031 3.969 13 N -0.919 5.919 14 Si 0.971 3.029 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.266 1.266 18 C 0.113 3.887 19 C 0.087 3.913 20 N -0.312 5.312 21 N -0.317 5.317 22 C 0.071 3.929 23 C -0.093 4.093 24 C -0.097 4.097 25 C -0.068 4.068 26 C -0.140 4.140 27 C 0.079 3.921 28 F -0.149 7.149 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.389 0.611 35 H 0.276 0.724 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.200 0.800 39 H 0.152 0.848 40 H 0.182 0.818 41 H 0.184 0.816 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.174 -22.104 -6.313 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.034 3.966 3 C -0.317 4.317 4 C 0.405 3.595 5 O -0.472 6.472 6 N -0.365 5.365 7 C -0.041 4.041 8 C 0.178 3.822 9 O -0.400 6.400 10 C -0.588 4.588 11 H 0.096 0.904 12 C -0.170 4.170 13 N -0.560 5.560 14 Si 0.796 3.204 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.009 4.009 19 C -0.101 4.101 20 N -0.129 5.129 21 N -0.091 5.091 22 C -0.019 4.019 23 C -0.113 4.113 24 C -0.115 4.115 25 C -0.086 4.086 26 C -0.159 4.159 27 C 0.059 3.941 28 F -0.128 7.128 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.216 0.784 39 H 0.170 0.830 40 H 0.199 0.801 41 H 0.201 0.799 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.668 -23.322 -6.265 26.820 hybrid contribution 1.691 1.921 0.472 2.603 sum -9.977 -21.401 -5.793 24.313 Atomic orbital electron populations 1.20791 0.83296 1.04931 1.05691 1.22021 0.96282 0.84810 0.93519 1.19988 0.93535 0.93110 1.25060 1.16849 0.83911 0.83263 0.75491 1.90634 1.16769 1.84567 1.55252 1.49407 1.08833 1.07220 1.71047 1.24090 0.78237 1.00429 1.01367 1.19777 0.91458 0.91528 0.79476 1.86037 1.37565 1.96622 1.19728 1.21630 0.97952 1.17775 1.21395 0.90443 1.25793 0.99522 0.97277 0.94363 1.69330 1.21906 1.38040 1.26677 0.85399 0.77351 0.78976 0.78666 1.19834 1.21031 1.19123 1.23323 0.98098 0.78785 1.00678 1.24639 0.98221 0.91723 0.95530 1.77346 0.96168 1.13267 1.26086 1.45578 1.04068 1.04140 1.55352 1.18019 1.02365 0.80210 1.01347 1.21388 0.95142 0.98924 0.95827 1.21625 1.00235 0.90315 0.99350 1.21717 0.92679 1.02311 0.91862 1.21512 0.99776 0.92027 1.02538 1.18187 0.90894 0.94787 0.90282 1.91507 1.62084 1.91691 1.67480 0.87114 0.88393 0.89401 0.92030 0.88584 0.75564 0.91418 0.87548 0.92538 0.78376 0.83050 0.80054 0.79904 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.14 8.42 71.24 0.60 -1.54 16 2 C 0.16 5.30 6.83 42.11 0.29 5.59 16 3 C -0.30 -11.74 6.13 -20.14 -0.12 -11.86 16 4 C 0.61 26.77 8.06 86.66 0.70 27.46 16 5 O -0.59 -27.18 15.75 -4.04 -0.06 -27.25 16 6 N -0.63 -27.99 3.69 -863.22 -3.19 -31.18 16 7 C 0.08 3.58 6.48 83.09 0.54 4.12 16 8 C 0.22 10.70 1.57 -11.29 -0.02 10.68 16 9 O -0.59 -31.57 13.54 -148.98 -2.02 -33.58 16 10 C -0.55 -27.37 8.69 25.60 0.22 -27.15 16 11 H 0.08 3.68 7.81 -2.91 -0.02 3.66 16 12 C 0.03 1.52 5.39 84.65 0.46 1.97 16 13 N -0.92 -47.09 11.01 21.45 0.24 -46.85 16 14 Si 0.97 39.52 29.54 68.60 2.03 41.55 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 17 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 18 C 0.11 5.04 8.04 83.19 0.67 5.71 16 19 C 0.09 3.29 11.13 85.65 0.95 4.24 16 20 N -0.31 -11.62 11.95 -56.24 -0.67 -12.29 16 21 N -0.32 -10.09 3.54 -174.35 -0.62 -10.71 16 22 C 0.07 1.73 5.90 38.12 0.22 1.95 16 23 C -0.09 -1.38 8.44 22.38 0.19 -1.19 16 24 C -0.10 -0.69 10.04 22.26 0.22 -0.46 16 25 C -0.07 -0.44 10.04 22.28 0.22 -0.22 16 26 C -0.14 -1.88 10.02 22.29 0.22 -1.66 16 27 C 0.08 1.88 7.28 22.48 0.16 2.05 16 28 F -0.15 -4.65 16.65 44.97 0.75 -3.91 16 29 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.10 1.74 7.08 -2.39 -0.02 1.72 16 31 H 0.09 2.53 6.81 -2.38 -0.02 2.51 16 32 H 0.06 2.74 6.21 -2.39 -0.01 2.72 16 33 H 0.10 3.91 8.10 -2.39 -0.02 3.89 16 34 H 0.39 21.22 6.33 -74.05 -0.47 20.75 16 35 H 0.28 13.47 8.31 -92.72 -0.77 12.70 16 36 H 0.11 4.21 8.10 -2.39 -0.02 4.19 16 37 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.20 7.28 5.24 -2.91 -0.02 7.26 16 39 H 0.15 1.88 7.43 -2.91 -0.02 1.86 16 40 H 0.18 -0.10 8.06 -2.91 -0.02 -0.12 16 41 H 0.18 -0.28 8.06 -2.91 -0.02 -0.30 16 42 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -71.00 361.33 2.61 -68.39 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.63 Total: 36.14 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 5.53 Total: 19.70 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -4.24 Total: -101.03 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -2.08 Total: -60.83 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.75 Total: -3.91 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -71.00 2.61 -68.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186810685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.854 kcal (2) G-P(sol) polarization free energy of solvation -71.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds