Wall clock time and date at job start Sat Apr 11 2020 07:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35355 * 126.43635 * 2 1 4 4 C 1.41525 * 105.55715 * 179.97438 * 3 2 1 5 5 C 1.47663 * 126.44121 * 180.12768 * 4 3 2 6 6 O 1.21574 * 120.00406 * 0.28842 * 5 4 3 7 7 N 1.34783 * 119.99649 * 180.28314 * 5 4 3 8 8 C 1.47067 * 136.05660 * 359.63630 * 7 5 4 9 9 C 1.53236 * 88.08131 * 207.20006 * 8 7 5 10 10 O 1.42903 * 114.19920 * 87.72669 * 9 8 7 11 11 C 1.50695 * 114.32485 * 220.46946 * 9 8 7 12 12 H 1.08007 * 120.00267 * 93.75886 * 11 9 8 13 13 C 1.37876 * 120.00132 * 273.75689 * 11 9 8 14 14 N 1.31511 * 120.00110 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99988 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47273 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47215 * 120.00270 * 15 13 11 18 18 H 1.48502 * 109.47030 * 240.00208 * 15 13 11 19 19 C 1.47064 * 136.05488 * 179.97438 * 7 5 4 20 20 N 1.31862 * 107.11063 * 0.35283 * 4 3 2 21 21 N 1.28468 * 110.12058 * 359.77738 * 20 4 3 22 22 C 1.40163 * 124.95988 * 180.02562 * 21 20 4 23 23 C 1.38864 * 120.04248 * 144.72492 * 22 21 20 24 24 C 1.38086 * 119.95307 * 179.74896 * 23 22 21 25 25 C 1.38492 * 120.04704 * 0.55082 * 24 23 22 26 26 F 1.35105 * 119.95994 * 179.72322 * 25 24 23 27 27 C 1.38499 * 120.08587 * 359.70307 * 25 24 23 28 28 C 1.38093 * 120.03919 * 0.02562 * 27 25 24 29 29 H 1.09002 * 109.47152 * 269.68463 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68564 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68545 * 1 2 3 32 32 H 1.08005 * 127.22376 * 0.04658 * 3 2 1 33 33 H 1.09000 * 113.46733 * 321.93355 * 8 7 5 34 34 H 1.08999 * 113.46795 * 92.37425 * 8 7 5 35 35 H 0.96700 * 113.99786 * 86.30216 * 10 9 8 36 36 H 0.96996 * 120.00525 * 179.97438 * 14 13 11 37 37 H 1.08998 * 113.47148 * 267.62868 * 19 7 5 38 38 H 1.08999 * 113.46807 * 38.01728 * 19 7 5 39 39 H 1.07998 * 120.02292 * 359.97438 * 23 22 21 40 40 H 1.08008 * 119.97912 * 180.27470 * 24 23 22 41 41 H 1.07997 * 119.98305 * 180.02562 * 27 25 24 42 42 H 1.07998 * 120.02252 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.0890 0.0000 4 6 3.6333 0.5846 0.0006 5 6 4.8761 1.3819 0.0035 6 8 4.8194 2.5962 0.0109 7 7 6.0736 0.7632 -0.0020 8 6 6.5459 -0.6296 -0.0046 9 6 7.8225 -0.1437 0.6900 10 8 7.7338 -0.1012 2.1156 11 6 9.0868 -0.7946 0.1910 12 1 9.6657 -0.3225 -0.5891 13 6 9.5046 -1.9927 0.7304 14 7 8.7995 -2.5678 1.6800 15 14 11.0721 -2.7991 0.1124 16 1 11.6763 -1.9566 -0.9508 17 1 12.0322 -2.9408 1.2363 18 1 10.7543 -4.1407 -0.4393 19 6 7.4828 1.1839 -0.0021 20 7 3.5466 -0.7312 -0.0068 21 7 2.3139 -1.0929 -0.0073 22 6 1.8667 -2.4212 -0.0138 23 6 0.7156 -2.7707 0.6799 24 6 0.2738 -4.0789 0.6680 25 6 0.9841 -5.0444 -0.0258 26 9 0.5533 -6.3249 -0.0317 27 6 2.1352 -4.6989 -0.7140 28 6 2.5772 -3.3906 -0.7091 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 2.0071 2.1254 0.0007 33 1 5.9426 -1.2937 0.6144 34 1 6.7201 -1.0270 -1.0045 35 1 7.9484 -0.9390 2.5482 36 1 9.0932 -3.4109 2.0592 37 1 7.9089 1.2740 -1.0013 38 1 7.6745 2.0594 0.6183 39 1 0.1643 -2.0191 1.2254 40 1 -0.6239 -4.3503 1.2038 41 1 2.6876 -5.4530 -1.2548 42 1 3.4747 -3.1214 -1.2461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188293471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:17 Heat of formation + Delta-G solvation = 27.317803 kcal Electronic energy + Delta-G solvation = -29624.379774 eV Core-core repulsion = 25294.735662 eV Total energy + Delta-G solvation = -4329.644112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.25417 -42.90648 -39.54272 -39.12348 -37.23853 -33.98831 -33.58804 -33.07187 -32.15195 -31.47661 -29.54888 -28.48733 -27.17969 -25.63926 -25.00821 -23.85554 -23.64446 -21.99541 -20.81660 -19.83084 -18.22666 -18.03828 -17.75179 -17.35701 -16.88282 -16.14933 -15.97817 -15.77686 -15.44110 -15.06375 -14.89953 -14.50677 -14.14916 -14.10092 -14.07437 -13.54448 -13.51113 -13.37516 -13.23345 -12.95330 -12.73721 -12.54335 -12.42906 -12.15462 -11.91829 -11.52243 -11.49131 -11.07339 -11.00295 -10.65403 -10.43176 -10.18575 -9.93364 -9.78386 -9.61580 -9.23985 -8.96949 -8.75127 -8.48840 -8.32696 -7.79171 -6.36999 -4.47164 0.38634 0.73558 1.84736 2.15713 2.26922 3.10348 3.14790 3.24199 3.28015 3.55272 3.81697 3.87176 4.18532 4.20687 4.34316 4.43629 4.54732 4.71874 4.78593 4.86685 4.93137 5.16917 5.20455 5.36508 5.42356 5.54738 5.59661 5.62151 5.64952 5.72178 5.82984 5.89251 6.01742 6.20024 6.26985 6.40280 6.48281 6.61642 6.71876 6.84111 6.94140 7.16329 7.66152 7.84544 7.93358 8.47981 8.56636 8.79210 9.23942 9.53959 10.69745 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009374 B = 0.003605 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.127407 B = 7764.608588 C =10302.141864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.006 3.994 3 C -0.172 4.172 4 C 0.015 3.985 5 C 0.619 3.381 6 O -0.556 6.556 7 N -0.619 5.619 8 C 0.082 3.918 9 C 0.237 3.763 10 O -0.571 6.571 11 C -0.532 4.532 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.108 3.892 20 N -0.243 5.243 21 N -0.244 5.244 22 C 0.129 3.871 23 C -0.094 4.094 24 C -0.136 4.136 25 C 0.102 3.898 26 F -0.135 7.135 27 C -0.133 4.133 28 C -0.070 4.070 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.166 0.834 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.393 0.607 36 H 0.273 0.727 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.677 -4.601 -3.932 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.199 4.199 4 C -0.147 4.147 5 C 0.406 3.594 6 O -0.434 6.434 7 N -0.351 5.351 8 C -0.040 4.040 9 C 0.195 3.805 10 O -0.384 6.384 11 C -0.570 4.570 12 H 0.091 0.909 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.013 4.013 20 N -0.074 5.074 21 N -0.027 5.027 22 C 0.038 3.962 23 C -0.115 4.115 24 C -0.155 4.155 25 C 0.082 3.918 26 F -0.113 7.113 27 C -0.152 4.152 28 C -0.089 4.089 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.183 0.817 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.250 0.750 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.445 -4.482 -3.926 19.383 hybrid contribution 0.376 -0.715 -0.168 0.825 sum -18.069 -5.197 -4.094 19.242 Atomic orbital electron populations 1.20491 0.86662 1.04077 1.03143 1.21562 0.95317 0.86052 1.08550 1.21540 0.90466 0.99457 1.08485 1.22124 0.95252 0.89365 1.07929 1.16268 0.80303 0.85562 0.77291 1.90731 1.86284 1.12743 1.53678 1.49535 1.04482 1.12269 1.68766 1.24131 0.96601 0.82261 1.01054 1.19532 0.91086 0.89494 0.80357 1.86041 1.92225 1.41780 1.18404 1.21465 1.08209 1.05938 1.21399 0.90868 1.25070 0.97300 0.96383 0.94263 1.69283 1.38919 1.18900 1.26667 0.86280 0.82274 0.79046 0.78922 1.19392 1.20635 1.20707 1.23389 0.77289 1.00419 1.00249 1.73891 0.99910 1.15138 1.18473 1.42710 1.03503 1.04233 1.52221 1.17558 0.96565 0.81181 1.00869 1.20943 0.95755 0.96687 0.98069 1.20956 1.01607 0.91670 1.01311 1.17779 0.95059 0.79140 0.99814 1.91529 1.89300 1.35553 1.94941 1.21106 0.96022 0.97066 1.01039 1.20986 0.99797 0.91141 0.96997 0.90220 0.90875 0.89413 0.81662 0.90946 0.90391 0.75009 0.91691 0.89463 0.91326 0.83685 0.83527 0.83383 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 8.58 36.01 0.31 -0.34 16 2 C 0.01 0.07 6.75 -81.84 -0.55 -0.48 16 3 C -0.17 -2.66 10.72 -39.36 -0.42 -3.08 16 4 C 0.02 0.30 7.10 -82.75 -0.59 -0.29 16 5 C 0.62 13.81 8.07 -12.41 -0.10 13.71 16 6 O -0.56 -13.36 17.70 5.30 0.09 -13.27 16 7 N -0.62 -14.04 3.69 -186.55 -0.69 -14.72 16 8 C 0.08 1.88 7.19 -8.64 -0.06 1.82 16 9 C 0.24 5.86 1.57 -91.38 -0.14 5.72 16 10 O -0.57 -15.25 13.54 -35.23 -0.48 -15.73 16 11 C -0.53 -13.47 8.69 -34.44 -0.30 -13.77 16 12 H 0.07 1.79 7.81 -52.48 -0.41 1.38 16 13 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 14 N -0.90 -23.06 11.01 55.43 0.61 -22.45 16 15 Si 0.91 19.50 29.54 -169.99 -5.02 14.48 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 C 0.11 2.44 8.04 -8.49 -0.07 2.38 16 20 N -0.24 -4.43 10.13 33.42 0.34 -4.09 16 21 N -0.24 -3.58 3.47 -6.84 -0.02 -3.60 16 22 C 0.13 1.56 6.20 -83.59 -0.52 1.04 16 23 C -0.09 -0.85 8.21 -39.41 -0.32 -1.18 16 24 C -0.14 -1.09 10.02 -39.54 -0.40 -1.49 16 25 C 0.10 0.96 7.30 -39.39 -0.29 0.67 16 26 F -0.13 -1.33 17.27 2.25 0.04 -1.29 16 27 C -0.13 -1.29 10.02 -39.54 -0.40 -1.69 16 28 C -0.07 -0.81 9.68 -39.41 -0.38 -1.19 16 29 H 0.08 0.47 7.69 -51.93 -0.40 0.07 16 30 H 0.07 0.47 6.85 -51.93 -0.36 0.12 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.17 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.07 1.73 7.51 -51.93 -0.39 1.34 16 34 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 35 H 0.39 10.60 6.33 45.56 0.29 10.89 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.09 1.78 8.10 -51.93 -0.42 1.36 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.15 1.03 6.02 -52.49 -0.32 0.72 16 40 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.15 1.84 8.00 -52.49 -0.42 1.42 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -31.09 366.37 -8.03 -39.11 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -4.09 Total: 12.49 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -4.33 Total: 3.54 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.24 Total: -44.87 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.38 Total: -29.00 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.09 -8.03 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188293471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.433 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds