Wall clock time and date at job start Sat Apr 11 2020 07:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35355 * 126.43635 * 2 1 4 4 C 1.41525 * 105.55715 * 179.97438 * 3 2 1 5 5 C 1.47663 * 126.44121 * 180.12768 * 4 3 2 6 6 O 1.21574 * 120.00406 * 0.28842 * 5 4 3 7 7 N 1.34783 * 119.99649 * 180.28314 * 5 4 3 8 8 C 1.47067 * 136.05660 * 359.63630 * 7 5 4 9 9 C 1.53236 * 88.08131 * 207.20006 * 8 7 5 10 10 O 1.42903 * 114.19920 * 87.72669 * 9 8 7 11 11 C 1.50695 * 114.32485 * 220.46946 * 9 8 7 12 12 H 1.08007 * 120.00267 * 93.75886 * 11 9 8 13 13 C 1.37876 * 120.00132 * 273.75689 * 11 9 8 14 14 N 1.31511 * 120.00110 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99988 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47273 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47215 * 120.00270 * 15 13 11 18 18 H 1.48502 * 109.47030 * 240.00208 * 15 13 11 19 19 C 1.47064 * 136.05488 * 179.97438 * 7 5 4 20 20 N 1.31862 * 107.11063 * 0.35283 * 4 3 2 21 21 N 1.28468 * 110.12058 * 359.77738 * 20 4 3 22 22 C 1.40163 * 124.95988 * 180.02562 * 21 20 4 23 23 C 1.38864 * 120.04248 * 144.72492 * 22 21 20 24 24 C 1.38086 * 119.95307 * 179.74896 * 23 22 21 25 25 C 1.38492 * 120.04704 * 0.55082 * 24 23 22 26 26 F 1.35105 * 119.95994 * 179.72322 * 25 24 23 27 27 C 1.38499 * 120.08587 * 359.70307 * 25 24 23 28 28 C 1.38093 * 120.03919 * 0.02562 * 27 25 24 29 29 H 1.09002 * 109.47152 * 269.68463 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68564 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68545 * 1 2 3 32 32 H 1.08005 * 127.22376 * 0.04658 * 3 2 1 33 33 H 1.09000 * 113.46733 * 321.93355 * 8 7 5 34 34 H 1.08999 * 113.46795 * 92.37425 * 8 7 5 35 35 H 0.96700 * 113.99786 * 86.30216 * 10 9 8 36 36 H 0.96996 * 120.00525 * 179.97438 * 14 13 11 37 37 H 1.08998 * 113.47148 * 267.62868 * 19 7 5 38 38 H 1.08999 * 113.46807 * 38.01728 * 19 7 5 39 39 H 1.07998 * 120.02292 * 359.97438 * 23 22 21 40 40 H 1.08008 * 119.97912 * 180.27470 * 24 23 22 41 41 H 1.07997 * 119.98305 * 180.02562 * 27 25 24 42 42 H 1.07998 * 120.02252 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.0890 0.0000 4 6 3.6333 0.5846 0.0006 5 6 4.8761 1.3819 0.0035 6 8 4.8194 2.5962 0.0109 7 7 6.0736 0.7632 -0.0020 8 6 6.5459 -0.6296 -0.0046 9 6 7.8225 -0.1437 0.6900 10 8 7.7338 -0.1012 2.1156 11 6 9.0868 -0.7946 0.1910 12 1 9.6657 -0.3225 -0.5891 13 6 9.5046 -1.9927 0.7304 14 7 8.7995 -2.5678 1.6800 15 14 11.0721 -2.7991 0.1124 16 1 11.6763 -1.9566 -0.9508 17 1 12.0322 -2.9408 1.2363 18 1 10.7543 -4.1407 -0.4393 19 6 7.4828 1.1839 -0.0021 20 7 3.5466 -0.7312 -0.0068 21 7 2.3139 -1.0929 -0.0073 22 6 1.8667 -2.4212 -0.0138 23 6 0.7156 -2.7707 0.6799 24 6 0.2738 -4.0789 0.6680 25 6 0.9841 -5.0444 -0.0258 26 9 0.5533 -6.3249 -0.0317 27 6 2.1352 -4.6989 -0.7140 28 6 2.5772 -3.3906 -0.7091 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 2.0071 2.1254 0.0007 33 1 5.9426 -1.2937 0.6144 34 1 6.7201 -1.0270 -1.0045 35 1 7.9484 -0.9390 2.5482 36 1 9.0932 -3.4109 2.0592 37 1 7.9089 1.2740 -1.0013 38 1 7.6745 2.0594 0.6183 39 1 0.1643 -2.0191 1.2254 40 1 -0.6239 -4.3503 1.2038 41 1 2.6876 -5.4530 -1.2548 42 1 3.4747 -3.1214 -1.2461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188293471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:16 Heat of formation + Delta-G solvation = 7.178545 kcal Electronic energy + Delta-G solvation = -29625.253078 eV Core-core repulsion = 25294.735662 eV Total energy + Delta-G solvation = -4330.517416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.01598 -44.05894 -41.24639 -40.07750 -39.03591 -35.94116 -34.66270 -34.14521 -33.99844 -32.25978 -30.98009 -29.83995 -28.14253 -27.40025 -26.85654 -25.09441 -24.46823 -23.14720 -21.97334 -21.46627 -19.87032 -19.24452 -18.96732 -18.67818 -17.83287 -17.68719 -17.28984 -16.95386 -16.79647 -16.67741 -16.18820 -15.94505 -15.74391 -15.06133 -15.04496 -14.84098 -14.54837 -14.42818 -14.27313 -14.22866 -13.97298 -13.82793 -13.72690 -13.50073 -13.43216 -12.98594 -12.82212 -12.80157 -12.28007 -12.24293 -12.17320 -11.84258 -11.58332 -11.11141 -10.99639 -10.69197 -10.35047 -10.27308 -10.05803 -9.70641 -9.40165 -8.28629 -6.46366 -0.49090 0.00229 0.53385 1.03397 1.23027 1.44996 1.48999 1.60282 1.89995 2.23858 2.33357 2.39994 2.92583 3.06525 3.17301 3.48869 3.55679 3.66401 3.66915 3.78770 4.00691 4.10522 4.12312 4.30555 4.40707 4.47190 4.48726 4.60158 4.69739 4.74439 4.75519 4.85999 4.87551 4.91751 4.93452 4.96518 5.01902 5.06379 5.20098 5.29689 5.53458 5.71203 5.88284 5.91155 6.59894 6.67238 6.71289 7.07399 7.27587 7.45374 8.78300 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009374 B = 0.003605 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.127407 B = 7764.608588 C =10302.141864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.029 3.971 3 C -0.190 4.190 4 C -0.024 4.024 5 C 0.613 3.387 6 O -0.582 6.582 7 N -0.625 5.625 8 C 0.102 3.898 9 C 0.219 3.781 10 O -0.586 6.586 11 C -0.551 4.551 12 H 0.078 0.922 13 C 0.031 3.969 14 N -0.919 5.919 15 Si 0.973 3.027 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.277 1.277 19 C 0.110 3.890 20 N -0.272 5.272 21 N -0.238 5.238 22 C 0.096 3.904 23 C -0.081 4.081 24 C -0.121 4.121 25 C 0.101 3.899 26 F -0.136 7.136 27 C -0.135 4.135 28 C -0.085 4.085 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.178 0.822 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.389 0.611 36 H 0.276 0.724 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.172 0.828 40 H 0.183 0.817 41 H 0.160 0.840 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.141 -5.992 -4.111 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.218 4.218 4 C -0.183 4.183 5 C 0.402 3.598 6 O -0.463 6.463 7 N -0.356 5.356 8 C -0.021 4.021 9 C 0.178 3.822 10 O -0.399 6.399 11 C -0.589 4.589 12 H 0.096 0.904 13 C -0.169 4.169 14 N -0.560 5.560 15 Si 0.798 3.202 16 H -0.188 1.188 17 H -0.206 1.206 18 H -0.202 1.202 19 C -0.012 4.012 20 N -0.106 5.106 21 N -0.021 5.021 22 C 0.007 3.993 23 C -0.101 4.101 24 C -0.140 4.140 25 C 0.081 3.919 26 F -0.114 7.114 27 C -0.154 4.154 28 C -0.105 4.105 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.195 0.805 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.244 0.756 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.079 0.921 39 H 0.189 0.811 40 H 0.200 0.800 41 H 0.178 0.822 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.915 -5.874 -4.114 22.110 hybrid contribution 1.012 -0.400 -0.089 1.092 sum -19.904 -6.274 -4.203 21.288 Atomic orbital electron populations 1.20778 0.82290 1.05891 1.05370 1.22332 0.97508 0.84352 1.05058 1.21771 0.89208 1.00984 1.09811 1.21851 0.95184 0.90099 1.11206 1.16776 0.81033 0.85687 0.76275 1.90684 1.86856 1.13841 1.54875 1.49583 1.04800 1.11980 1.69283 1.23844 0.95368 0.82158 1.00752 1.19800 0.91892 0.91032 0.79482 1.86024 1.92388 1.41631 1.19883 1.21688 1.08721 1.06544 1.21949 0.90382 1.25816 1.00061 0.96719 0.94285 1.69354 1.40157 1.19205 1.27303 0.85266 0.78489 0.78096 0.78340 1.18811 1.20616 1.20228 1.23415 0.77733 0.99096 1.00983 1.73780 1.02338 1.14798 1.19652 1.42988 1.02764 1.05749 1.50618 1.17966 0.98256 0.80134 1.02982 1.21214 0.94266 0.97720 0.96869 1.21318 1.02049 0.90565 1.00034 1.17939 0.94905 0.79388 0.99640 1.91535 1.89221 1.35746 1.94915 1.21200 0.96509 0.96481 1.01220 1.20916 0.99630 0.92128 0.97844 0.87515 0.89142 0.87543 0.80488 0.92556 0.89722 0.75560 0.91380 0.87325 0.92084 0.81067 0.79978 0.82242 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 8.58 71.24 0.61 -0.33 16 2 C 0.03 0.69 6.75 41.27 0.28 0.97 16 3 C -0.19 -5.86 10.72 22.41 0.24 -5.62 16 4 C -0.02 -0.94 7.10 42.44 0.30 -0.64 16 5 C 0.61 28.57 8.07 86.73 0.70 29.27 16 6 O -0.58 -29.07 17.70 -3.95 -0.07 -29.14 16 7 N -0.62 -29.51 3.69 -862.85 -3.19 -32.69 16 8 C 0.10 4.85 7.19 83.09 0.60 5.44 16 9 C 0.22 11.17 1.57 -11.29 -0.02 11.15 16 10 O -0.59 -32.52 13.54 -148.98 -2.02 -34.53 16 11 C -0.55 -28.25 8.69 25.60 0.22 -28.03 16 12 H 0.08 3.83 7.81 -2.91 -0.02 3.81 16 13 C 0.03 1.58 5.39 84.65 0.46 2.03 16 14 N -0.92 -47.94 11.01 21.45 0.24 -47.70 16 15 Si 0.97 39.87 29.54 68.60 2.03 41.90 16 16 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 17 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 19 C 0.11 5.10 8.04 83.19 0.67 5.76 16 20 N -0.27 -10.28 10.13 -48.17 -0.49 -10.77 16 21 N -0.24 -6.86 3.47 -175.54 -0.61 -7.47 16 22 C 0.10 2.21 6.20 38.10 0.24 2.44 16 23 C -0.08 -1.18 8.21 22.38 0.18 -1.00 16 24 C -0.12 -1.45 10.02 22.29 0.22 -1.23 16 25 C 0.10 1.63 7.30 22.39 0.16 1.80 16 26 F -0.14 -2.32 17.27 44.97 0.78 -1.54 16 27 C -0.13 -2.49 10.02 22.30 0.22 -2.27 16 28 C -0.09 -1.99 9.68 22.38 0.22 -1.77 16 29 H 0.11 0.70 7.69 -2.39 -0.02 0.68 16 30 H 0.09 0.74 6.85 -2.39 -0.02 0.73 16 31 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.18 4.78 8.06 -2.91 -0.02 4.76 16 33 H 0.06 2.83 7.51 -2.39 -0.02 2.82 16 34 H 0.08 3.84 8.10 -2.39 -0.02 3.82 16 35 H 0.39 21.78 6.33 -74.06 -0.47 21.31 16 36 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 37 H 0.11 4.49 8.10 -2.39 -0.02 4.48 16 38 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.17 1.58 6.02 -2.91 -0.02 1.56 16 40 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 41 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.13 3.45 8.00 -2.91 -0.02 3.43 16 Total: -1.00 -70.23 366.37 2.59 -67.64 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: 0.62 Total: 36.31 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 5.31 Total: 17.99 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.05 Total: -98.63 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -2.09 Total: -63.67 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -70.23 2.59 -67.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188293471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.820 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds