Wall clock time and date at job start Sat Apr 11 2020 07:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38285 * 126.32505 * 2 1 4 4 C 1.46962 * 126.43995 * 0.03758 * 3 2 1 5 5 C 1.35058 * 120.00204 * 217.72524 * 4 3 2 6 6 C 1.41791 * 120.00179 * 13.39357 * 5 4 3 7 7 O 1.21760 * 119.99618 * 6.65377 * 6 5 4 8 8 N 1.34776 * 120.00341 * 186.65952 * 6 5 4 9 9 C 1.39988 * 120.00116 * 175.60113 * 8 6 5 10 10 C 1.38732 * 120.08178 * 33.84434 * 9 8 6 11 11 C 1.38177 * 120.02014 * 179.74923 * 10 9 8 12 12 C 1.38559 * 120.17776 * 0.55235 * 11 10 9 13 13 F 1.35103 * 119.92057 * 179.72764 * 12 11 10 14 14 C 1.38344 * 120.15770 * 359.69936 * 12 11 10 15 15 C 1.38733 * 119.98070 * 0.02688 * 14 12 11 16 16 O 1.35770 * 120.08618 * 179.97438 * 15 14 12 17 17 C 1.34806 * 117.00550 * 6.80542 * 16 15 14 18 18 H 1.07999 * 119.99457 * 5.86480 * 17 16 15 19 19 C 1.38635 * 120.00008 * 185.86575 * 17 16 15 20 20 N 1.31565 * 120.00426 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99773 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47169 * 59.99809 * 21 19 17 23 23 H 1.48498 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48510 * 109.47312 * 300.00336 * 21 19 17 25 25 C 1.41439 * 107.11763 * 180.18479 * 3 2 1 26 26 N 1.30444 * 108.03922 * 359.56956 * 25 3 2 27 27 N 1.34412 * 126.31248 * 179.71246 * 2 1 3 28 28 C 1.46497 * 125.74756 * 359.97353 * 27 2 1 29 29 H 1.09006 * 109.46958 * 270.31421 * 1 2 3 30 30 H 1.09004 * 109.46562 * 30.30385 * 1 2 3 31 31 H 1.08998 * 109.47353 * 150.30846 * 1 2 3 32 32 H 1.08001 * 120.00069 * 37.72532 * 4 3 2 33 33 H 1.08000 * 120.00175 * 193.39259 * 5 4 3 34 34 H 0.97000 * 119.99726 * 355.60095 * 8 6 5 35 35 H 1.08003 * 119.98933 * 0.02562 * 10 9 8 36 36 H 1.08006 * 119.91306 * 180.25672 * 11 10 9 37 37 H 1.08000 * 120.01048 * 180.02562 * 14 12 11 38 38 H 0.96997 * 120.00293 * 179.97438 * 20 19 17 39 39 H 1.07998 * 125.97575 * 179.83323 * 25 3 2 40 40 H 1.09000 * 109.46998 * 269.97442 * 28 27 2 41 41 H 1.09003 * 109.47082 * 29.96557 * 28 27 2 42 42 H 1.08992 * 109.47359 * 149.96975 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.1141 0.0000 4 6 1.8907 2.5177 0.0008 5 6 2.5738 3.4371 -0.7149 6 6 3.5236 3.0204 -1.6817 7 8 3.6373 1.8390 -1.9535 8 7 4.3006 3.9319 -2.2996 9 6 5.3007 3.5138 -3.1854 10 6 5.1089 2.3842 -3.9678 11 6 6.0948 1.9756 -4.8455 12 6 7.2815 2.6848 -4.9391 13 9 8.2442 2.2774 -5.7950 14 6 7.4827 3.8092 -4.1587 15 6 6.4950 4.2286 -3.2794 16 8 6.6904 5.3315 -2.5120 17 6 7.8026 6.0545 -2.7515 18 1 8.4410 5.8029 -3.5854 19 6 8.1269 7.1210 -1.9272 20 7 7.3494 7.4272 -0.9110 21 14 9.6685 8.1225 -2.2586 22 1 9.5842 8.7277 -3.6121 23 1 9.7884 9.1978 -1.2416 24 1 10.8589 7.2376 -2.1855 25 6 3.6618 0.6488 -0.0044 26 7 3.6352 -0.6553 0.0025 27 7 2.3030 -1.0831 0.0054 28 6 1.8517 -2.4768 0.0130 29 1 -0.3633 0.0056 1.0277 30 1 -0.3632 0.8873 -0.5186 31 1 -0.3634 -0.8927 -0.5090 32 1 1.0244 2.8141 0.5736 33 1 2.3966 4.4898 -0.5508 34 1 4.1668 4.8776 -2.1306 35 1 4.1869 1.8267 -3.8940 36 1 5.9420 1.0984 -5.4567 37 1 8.4084 4.3603 -4.2339 38 1 7.5764 8.1732 -0.3341 39 1 4.5484 1.2654 -0.0080 40 1 1.7406 -2.8171 1.0425 41 1 0.8926 -2.5509 -0.4996 42 1 2.5860 -3.0992 -0.4983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255137251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:29 Heat of formation + Delta-G solvation = 9.786842 kcal Electronic energy + Delta-G solvation = -29444.759736 eV Core-core repulsion = 25114.355425 eV Total energy + Delta-G solvation = -4330.404312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.85140 -42.21928 -41.49354 -40.19236 -38.06012 -35.66979 -34.87063 -34.30225 -34.09744 -32.15226 -31.08516 -30.02755 -27.74315 -27.48026 -27.32065 -24.97688 -23.87895 -22.95992 -21.94801 -20.81343 -20.18121 -20.12440 -19.31250 -18.23741 -18.09327 -17.06033 -17.00184 -16.89181 -16.61980 -16.50250 -16.02066 -15.90166 -15.53478 -15.35307 -15.29175 -15.01689 -14.84171 -14.47010 -14.17757 -13.99070 -13.87878 -13.72499 -13.46641 -13.41327 -13.20530 -13.06758 -12.99474 -12.73773 -12.54422 -12.33895 -12.15713 -11.69718 -11.55237 -11.10814 -10.88683 -10.82024 -10.56008 -10.01864 -9.54260 -8.79084 -8.60952 -8.50210 -6.16715 -0.05517 0.34836 0.46278 1.05223 1.36759 1.45367 1.50724 1.72690 2.10928 2.14034 2.38588 2.47311 2.75958 3.04284 3.18863 3.44539 3.65640 3.80141 3.92689 4.09534 4.16412 4.20053 4.31977 4.37453 4.40454 4.45360 4.56719 4.66841 4.69355 4.81100 4.88506 4.95313 5.03564 5.08114 5.12169 5.21528 5.31156 5.34007 5.42345 5.55811 5.63309 5.72999 5.93340 6.06609 6.24448 6.65537 6.83372 6.93718 7.34331 7.63322 8.70035 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.003041 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.151024 B = 9205.378854 C =10637.452250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.115 3.885 3 C -0.257 4.257 4 C 0.064 3.936 5 C -0.262 4.262 6 C 0.539 3.461 7 O -0.553 6.553 8 N -0.653 5.653 9 C 0.068 3.932 10 C -0.052 4.052 11 C -0.207 4.207 12 C 0.119 3.881 13 F -0.146 7.146 14 C -0.265 4.265 15 C 0.130 3.870 16 O -0.200 6.200 17 C -0.418 4.418 18 H 0.097 0.903 19 C -0.008 4.008 20 N -0.903 5.903 21 Si 1.010 2.990 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.264 1.264 25 C 0.119 3.881 26 N -0.357 5.357 27 N -0.377 5.377 28 C 0.091 3.909 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.175 0.825 33 H 0.153 0.847 34 H 0.414 0.586 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.135 0.865 38 H 0.275 0.725 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.192 -12.326 2.593 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.015 4.015 3 C -0.269 4.269 4 C 0.043 3.957 5 C -0.283 4.283 6 C 0.334 3.666 7 O -0.434 6.434 8 N -0.297 5.297 9 C -0.027 4.027 10 C -0.072 4.072 11 C -0.227 4.227 12 C 0.100 3.900 13 F -0.125 7.125 14 C -0.286 4.286 15 C 0.076 3.924 16 O -0.105 6.105 17 C -0.494 4.494 18 H 0.114 0.886 19 C -0.207 4.207 20 N -0.540 5.540 21 Si 0.830 3.170 22 H -0.183 1.183 23 H -0.193 1.193 24 H -0.188 1.188 25 C -0.067 4.067 26 N -0.177 5.177 27 N -0.158 5.158 28 C -0.048 4.048 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.192 0.808 33 H 0.171 0.829 34 H 0.251 0.749 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.153 0.847 38 H 0.084 0.916 39 H 0.165 0.835 40 H 0.109 0.891 41 H 0.135 0.865 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.578 -14.140 2.781 21.966 hybrid contribution 1.302 1.781 -0.363 2.236 sum -15.275 -12.359 2.418 19.797 Atomic orbital electron populations 1.20689 0.83320 1.05469 1.05235 1.22226 0.96097 0.86006 0.97181 1.19321 0.91650 0.94327 1.21573 1.22009 0.94738 0.88424 0.90546 1.21913 1.02738 1.02113 1.01549 1.17911 0.81230 0.85185 0.82294 1.90800 1.69440 1.17266 1.65847 1.43358 1.32268 1.11148 1.42936 1.17144 0.88097 0.99234 0.98251 1.20831 0.99849 0.94507 0.92022 1.20855 0.93218 1.03712 1.04940 1.17447 0.86961 0.94746 0.90894 1.91420 1.62725 1.90054 1.68251 1.20926 1.02434 1.01311 1.03931 1.19206 0.92158 0.88853 0.92175 1.83924 1.42604 1.31695 1.52303 1.21686 1.01955 1.10960 1.14774 0.88576 1.26374 1.02193 0.97743 0.94438 1.70116 1.38787 1.28818 1.16260 0.84759 0.75889 0.77419 0.78925 1.18269 1.19307 1.18832 1.23529 0.97785 0.91308 0.94111 1.77035 0.98305 1.13860 1.28519 1.48484 1.03156 1.07590 1.56584 1.22177 1.02022 0.75954 1.04697 0.87538 0.88533 0.89090 0.80796 0.82899 0.74934 0.83199 0.83009 0.84746 0.91554 0.83459 0.89105 0.86509 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.93 71.24 0.71 -0.11 16 2 C 0.12 2.44 7.02 42.17 0.30 2.74 16 3 C -0.26 -6.95 4.79 -20.19 -0.10 -7.05 16 4 C 0.06 1.37 9.77 23.83 0.23 1.60 16 5 C -0.26 -6.79 9.80 22.42 0.22 -6.57 16 6 C 0.54 18.71 6.79 85.12 0.58 19.29 16 7 O -0.55 -21.32 9.19 -4.54 -0.04 -21.36 16 8 N -0.65 -25.08 5.18 -310.94 -1.61 -26.69 16 9 C 0.07 2.95 6.34 38.26 0.24 3.19 16 10 C -0.05 -2.04 8.70 22.37 0.19 -1.84 16 11 C -0.21 -7.76 10.02 22.33 0.22 -7.54 16 12 C 0.12 4.90 7.29 22.37 0.16 5.06 16 13 F -0.15 -5.64 17.26 44.97 0.78 -4.86 16 14 C -0.27 -12.21 9.10 22.41 0.20 -12.01 16 15 C 0.13 6.33 6.66 22.69 0.15 6.48 16 16 O -0.20 -11.12 9.31 -22.72 -0.21 -11.33 16 17 C -0.42 -23.22 9.43 67.91 0.64 -22.58 16 18 H 0.10 5.04 5.33 -2.91 -0.02 5.02 16 19 C -0.01 -0.41 5.49 84.83 0.47 0.06 16 20 N -0.90 -51.57 13.67 21.61 0.30 -51.27 16 21 Si 1.01 41.44 29.55 68.60 2.03 43.46 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 23 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 25 C 0.12 4.13 8.85 85.69 0.76 4.89 16 26 N -0.36 -12.18 12.49 -56.18 -0.70 -12.89 16 27 N -0.38 -9.20 3.98 -354.01 -1.41 -10.61 16 28 C 0.09 1.22 11.25 127.77 1.44 2.65 16 29 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.10 0.76 7.98 -2.38 -0.02 0.75 16 31 H 0.09 0.51 7.06 -2.39 -0.02 0.49 16 32 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.41 15.44 8.51 -92.71 -0.79 14.65 16 35 H 0.15 5.73 6.13 -2.91 -0.02 5.71 16 36 H 0.15 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.13 6.27 5.74 -2.91 -0.02 6.25 16 38 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.15 5.75 7.30 -2.91 -0.02 5.73 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 41 H 0.12 0.75 7.02 -2.39 -0.02 0.73 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -76.52 365.15 5.85 -70.67 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: 0.31 Total: 36.60 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 6.42 Total: -11.72 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -3.43 Total: -101.45 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.25 Total: -32.70 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.78 Total: -4.86 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -76.52 5.85 -70.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255137251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.461 kcal (2) G-P(sol) polarization free energy of solvation -76.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds