Wall clock time and date at job start Sat Apr 11 2020 07:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.91727 * 2 1 4 4 C 1.31783 * 117.12292 * 180.02562 * 3 2 1 5 5 C 1.50708 * 122.74751 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46865 * 305.02308 * 5 4 3 7 7 O 1.21276 * 120.00026 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99833 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00118 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47501 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.47235 * 64.99950 * 10 9 8 12 12 N 1.46503 * 109.46789 * 305.00106 * 10 9 8 13 13 C 1.36932 * 120.00361 * 304.55258 * 12 10 9 14 14 H 1.08006 * 119.99912 * 4.79749 * 13 12 10 15 15 C 1.38813 * 120.00237 * 184.79454 * 13 12 10 16 16 N 1.31619 * 119.99851 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00014 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47084 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47191 * 120.00155 * 17 15 13 20 20 H 1.48500 * 109.47179 * 239.99949 * 17 15 13 21 21 C 1.50699 * 109.47150 * 185.00287 * 10 9 8 22 22 C 1.38227 * 120.00129 * 332.91318 * 21 10 9 23 23 C 1.38243 * 119.99947 * 179.79313 * 22 21 10 24 24 C 1.38231 * 119.99936 * 0.43966 * 23 22 21 25 25 C 1.38236 * 119.99687 * 359.81336 * 24 23 22 26 26 C 1.38227 * 120.00395 * 359.97438 * 25 24 23 27 27 C 1.33635 * 114.50278 * 0.22695 * 4 3 2 28 28 S 1.70977 * 124.91411 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.46971 * 90.00342 * 1 2 3 30 30 H 1.09004 * 109.46984 * 210.00346 * 1 2 3 31 31 H 1.09000 * 109.47058 * 329.99578 * 1 2 3 32 32 H 1.08991 * 109.47167 * 185.02554 * 5 4 3 33 33 H 1.08998 * 109.46911 * 65.01884 * 5 4 3 34 34 H 0.96997 * 120.00310 * 359.97438 * 8 6 5 35 35 H 1.08996 * 109.47581 * 300.00307 * 9 8 6 36 36 H 1.09008 * 109.47000 * 59.99911 * 9 8 6 37 37 H 0.97007 * 119.99565 * 124.55441 * 12 10 9 38 38 H 0.97001 * 119.99817 * 179.97438 * 16 15 13 39 39 H 1.08006 * 120.00337 * 359.97438 * 22 21 10 40 40 H 1.07997 * 119.99776 * 180.27729 * 23 22 21 41 41 H 1.07999 * 120.00006 * 179.83526 * 24 23 22 42 42 H 1.08007 * 119.99549 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.00104 * 180.02562 * 26 25 24 44 44 H 1.08001 * 126.03461 * 179.76663 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0245 -0.0012 6 6 4.2371 2.9360 -1.1648 7 8 3.3228 2.6806 -1.9195 8 7 4.9912 4.0345 -1.3673 9 6 4.7061 4.9204 -2.4987 10 6 5.7005 6.0832 -2.4994 11 1 6.7057 5.7015 -2.6781 12 7 5.6594 6.7615 -1.2015 13 6 4.4722 7.2430 -0.7179 14 1 3.5543 7.0552 -1.2552 15 6 4.4484 7.9723 0.4630 16 7 5.5671 8.2015 1.1175 17 14 2.8288 8.6284 1.1231 18 1 1.7264 8.2362 0.2087 19 1 2.5778 8.0609 2.4722 20 1 2.8945 10.1092 1.2134 21 6 5.3325 7.0583 -3.5878 22 6 4.6541 6.6188 -4.7091 23 6 4.3127 7.5142 -5.7056 24 6 4.6577 8.8473 -5.5848 25 6 5.3407 9.2857 -4.4658 26 6 5.6782 8.3913 -3.4674 27 6 3.9354 -0.4007 -0.0058 28 16 2.4856 -1.4020 0.0006 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 5.5448 1.6352 -0.0915 33 1 4.4375 2.5829 0.9303 34 1 5.7227 4.2387 -0.7639 35 1 4.7992 4.3618 -3.4300 36 1 3.6921 5.3100 -2.4086 37 1 6.4732 6.8697 -0.6848 38 1 5.5505 8.7115 1.9425 39 1 4.3882 5.5764 -4.8055 40 1 3.7787 7.1716 -6.5796 41 1 4.3933 9.5462 -6.3645 42 1 5.6099 10.3275 -4.3713 43 1 6.2115 8.7340 -2.5930 44 1 4.9546 -0.7581 -0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317727271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:22 Heat of formation + Delta-G solvation = 48.169571 kcal Electronic energy + Delta-G solvation = -27080.775969 eV Core-core repulsion = 23318.249233 eV Total energy + Delta-G solvation = -3762.526736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16849 -39.14117 -38.42800 -35.84117 -33.37877 -33.08605 -31.93524 -30.43410 -29.80982 -29.45936 -28.01723 -26.76042 -24.38982 -23.08294 -22.31248 -21.69244 -20.15084 -19.83637 -19.56631 -17.78044 -17.37983 -16.69553 -16.25011 -15.66829 -15.16909 -15.05657 -14.86818 -14.61841 -14.36171 -14.12716 -13.86600 -13.71925 -13.27338 -13.22065 -12.95824 -12.77992 -12.60649 -12.54177 -12.26224 -12.22025 -12.02907 -11.69715 -11.36815 -11.22585 -10.92176 -10.77546 -10.56496 -10.39422 -10.00958 -9.72794 -9.56182 -9.45245 -9.33237 -9.04556 -8.69253 -8.40704 -8.33049 -8.09930 -7.12299 -5.85130 -3.16171 0.70512 1.34294 1.68589 1.91755 2.00338 2.81307 3.14381 3.40822 3.48750 3.51800 3.80705 4.04787 4.36136 4.56339 4.80513 5.05739 5.17936 5.20411 5.27073 5.35856 5.36443 5.40773 5.47679 5.49773 5.51741 5.63879 5.70035 5.75625 5.78719 5.85443 5.97065 6.04460 6.15142 6.23010 6.36035 6.55241 6.65841 6.68145 6.94784 7.05635 7.12774 7.33791 7.60260 7.72708 7.84728 8.10009 8.31367 8.77537 9.45406 9.92190 10.29384 11.36338 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.003007 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.661804 B = 9309.791606 C =10640.918734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.442 5.442 4 C 0.100 3.900 5 C -0.070 4.070 6 C 0.515 3.485 7 O -0.538 6.538 8 N -0.704 5.704 9 C 0.118 3.882 10 C 0.197 3.803 11 H 0.072 0.928 12 N -0.713 5.713 13 C -0.229 4.229 14 H 0.070 0.930 15 C -0.005 4.005 16 N -0.931 5.931 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.078 4.078 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.131 4.131 26 C -0.074 4.074 27 C -0.262 4.262 28 S 0.092 5.908 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.403 0.597 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.387 0.613 38 H 0.254 0.746 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.131 0.869 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 -15.091 -5.153 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.225 4.225 3 N -0.156 5.156 4 C -0.033 4.033 5 C -0.113 4.113 6 C 0.300 3.700 7 O -0.416 6.416 8 N -0.355 5.355 9 C -0.008 4.008 10 C 0.085 3.915 11 H 0.090 0.910 12 N -0.353 5.353 13 C -0.360 4.360 14 H 0.088 0.912 15 C -0.201 4.201 16 N -0.579 5.579 17 Si 0.730 3.270 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.081 4.081 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.093 4.093 27 C -0.400 4.400 28 S 0.346 5.654 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.238 0.762 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.221 0.779 38 H 0.064 0.936 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.149 0.851 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.867 -15.768 -5.630 16.847 hybrid contribution 0.239 1.458 0.882 1.721 sum -1.629 -14.310 -4.748 15.165 Atomic orbital electron populations 1.20435 0.85337 1.03993 1.03933 1.27044 1.01767 0.90401 1.03320 1.66017 1.04403 1.31008 1.14164 1.19631 0.90000 0.93097 1.00543 1.20264 0.97472 0.93489 1.00081 1.20082 0.82304 0.81736 0.85885 1.90685 1.29978 1.73716 1.47178 1.45676 1.34824 1.24076 1.30931 1.21763 1.01029 0.90736 0.87244 1.19363 0.96225 0.89812 0.86053 0.90961 1.42402 1.09166 1.67533 1.16239 1.19106 0.86557 1.26216 1.04089 0.91220 1.24658 0.96584 1.00590 0.98260 1.69651 1.24849 1.45121 1.18289 0.86241 0.83628 0.78457 0.78714 1.20515 1.21905 1.21884 1.20717 0.96834 0.95848 0.94712 1.21128 0.99587 0.99506 0.94316 1.20971 1.01283 0.93744 0.99035 1.20983 1.00387 0.95708 0.98217 1.21121 0.99894 0.99313 0.94552 1.21083 0.98083 0.92549 0.97553 1.26693 1.02944 0.95558 1.14832 1.83765 0.98332 1.13599 1.69679 0.89582 0.90328 0.89183 0.87557 0.86920 0.76214 0.92779 0.91379 0.77893 0.93587 0.86507 0.87101 0.87220 0.86932 0.85118 0.80648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.46 36.01 0.38 -0.36 16 2 C 0.05 0.71 7.39 -13.46 -0.10 0.61 16 3 N -0.44 -7.31 9.68 -8.05 -0.08 -7.39 16 4 C 0.10 1.47 5.64 -84.22 -0.47 0.99 16 5 C -0.07 -0.96 6.20 -29.03 -0.18 -1.14 16 6 C 0.52 9.04 7.80 -10.99 -0.09 8.96 16 7 O -0.54 -11.49 15.44 5.56 0.09 -11.40 16 8 N -0.70 -11.89 5.39 -60.29 -0.32 -12.21 16 9 C 0.12 2.13 3.88 -4.04 -0.02 2.11 16 10 C 0.20 3.52 3.26 -69.08 -0.23 3.30 16 11 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 12 N -0.71 -15.37 3.82 -54.55 -0.21 -15.58 16 13 C -0.23 -5.79 8.63 -15.06 -0.13 -5.92 16 14 H 0.07 1.87 6.91 -52.48 -0.36 1.51 16 15 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 16 N -0.93 -26.03 13.06 55.49 0.72 -25.30 16 17 Si 0.90 22.30 29.55 -169.99 -5.02 17.28 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 C -0.08 -1.42 5.19 -104.63 -0.54 -1.96 16 22 C -0.13 -2.11 9.14 -39.58 -0.36 -2.47 16 23 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 24 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 25 C -0.13 -2.18 10.05 -39.59 -0.40 -2.58 16 26 C -0.07 -1.40 9.00 -39.59 -0.36 -1.75 16 27 C -0.26 -3.07 11.07 29.12 0.32 -2.74 16 28 S 0.09 0.98 23.18 -107.50 -2.49 -1.51 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.11 1.04 8.03 -51.93 -0.42 0.63 16 33 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.40 6.29 8.14 -40.82 -0.33 5.96 16 35 H 0.05 0.91 6.85 -51.93 -0.36 0.56 16 36 H 0.07 1.47 7.14 -51.92 -0.37 1.09 16 37 H 0.39 8.80 8.04 -40.82 -0.33 8.47 16 38 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.12 1.80 6.22 -52.48 -0.33 1.47 16 40 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 43 H 0.13 2.68 7.50 -52.49 -0.39 2.29 16 44 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -32.73 384.82 -10.40 -43.13 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -5.83 Total: 15.27 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -3.06 Total: -8.08 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.11 Total: -60.49 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.73 -10.40 -43.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317727271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.303 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds