Wall clock time and date at job start Sat Apr 11 2020 07:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.91727 * 2 1 4 4 C 1.31783 * 117.12292 * 180.02562 * 3 2 1 5 5 C 1.50708 * 122.74751 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46865 * 305.02308 * 5 4 3 7 7 O 1.21276 * 120.00026 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99833 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00118 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47501 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.47235 * 64.99950 * 10 9 8 12 12 N 1.46503 * 109.46789 * 305.00106 * 10 9 8 13 13 C 1.36932 * 120.00361 * 304.55258 * 12 10 9 14 14 H 1.08006 * 119.99912 * 4.79749 * 13 12 10 15 15 C 1.38813 * 120.00237 * 184.79454 * 13 12 10 16 16 N 1.31619 * 119.99851 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00014 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47084 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47191 * 120.00155 * 17 15 13 20 20 H 1.48500 * 109.47179 * 239.99949 * 17 15 13 21 21 C 1.50699 * 109.47150 * 185.00287 * 10 9 8 22 22 C 1.38227 * 120.00129 * 332.91318 * 21 10 9 23 23 C 1.38243 * 119.99947 * 179.79313 * 22 21 10 24 24 C 1.38231 * 119.99936 * 0.43966 * 23 22 21 25 25 C 1.38236 * 119.99687 * 359.81336 * 24 23 22 26 26 C 1.38227 * 120.00395 * 359.97438 * 25 24 23 27 27 C 1.33635 * 114.50278 * 0.22695 * 4 3 2 28 28 S 1.70977 * 124.91411 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.46971 * 90.00342 * 1 2 3 30 30 H 1.09004 * 109.46984 * 210.00346 * 1 2 3 31 31 H 1.09000 * 109.47058 * 329.99578 * 1 2 3 32 32 H 1.08991 * 109.47167 * 185.02554 * 5 4 3 33 33 H 1.08998 * 109.46911 * 65.01884 * 5 4 3 34 34 H 0.96997 * 120.00310 * 359.97438 * 8 6 5 35 35 H 1.08996 * 109.47581 * 300.00307 * 9 8 6 36 36 H 1.09008 * 109.47000 * 59.99911 * 9 8 6 37 37 H 0.97007 * 119.99565 * 124.55441 * 12 10 9 38 38 H 0.97001 * 119.99817 * 179.97438 * 16 15 13 39 39 H 1.08006 * 120.00337 * 359.97438 * 22 21 10 40 40 H 1.07997 * 119.99776 * 180.27729 * 23 22 21 41 41 H 1.07999 * 120.00006 * 179.83526 * 24 23 22 42 42 H 1.08007 * 119.99549 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.00104 * 180.02562 * 26 25 24 44 44 H 1.08001 * 126.03461 * 179.76663 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0245 -0.0012 6 6 4.2371 2.9360 -1.1648 7 8 3.3228 2.6806 -1.9195 8 7 4.9912 4.0345 -1.3673 9 6 4.7061 4.9204 -2.4987 10 6 5.7005 6.0832 -2.4994 11 1 6.7057 5.7015 -2.6781 12 7 5.6594 6.7615 -1.2015 13 6 4.4722 7.2430 -0.7179 14 1 3.5543 7.0552 -1.2552 15 6 4.4484 7.9723 0.4630 16 7 5.5671 8.2015 1.1175 17 14 2.8288 8.6284 1.1231 18 1 1.7264 8.2362 0.2087 19 1 2.5778 8.0609 2.4722 20 1 2.8945 10.1092 1.2134 21 6 5.3325 7.0583 -3.5878 22 6 4.6541 6.6188 -4.7091 23 6 4.3127 7.5142 -5.7056 24 6 4.6577 8.8473 -5.5848 25 6 5.3407 9.2857 -4.4658 26 6 5.6782 8.3913 -3.4674 27 6 3.9354 -0.4007 -0.0058 28 16 2.4856 -1.4020 0.0006 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 5.5448 1.6352 -0.0915 33 1 4.4375 2.5829 0.9303 34 1 5.7227 4.2387 -0.7639 35 1 4.7992 4.3618 -3.4300 36 1 3.6921 5.3100 -2.4086 37 1 6.4732 6.8697 -0.6848 38 1 5.5505 8.7115 1.9425 39 1 4.3882 5.5764 -4.8055 40 1 3.7787 7.1716 -6.5796 41 1 4.3933 9.5462 -6.3645 42 1 5.6099 10.3275 -4.3713 43 1 6.2115 8.7340 -2.5930 44 1 4.9546 -0.7581 -0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317727271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:21 Heat of formation + Delta-G solvation = 27.142009 kcal Electronic energy + Delta-G solvation = -27081.687793 eV Core-core repulsion = 23318.249233 eV Total energy + Delta-G solvation = -3763.438559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28040 -40.46335 -39.73673 -37.38819 -35.05257 -34.08798 -33.55672 -31.81487 -31.08963 -30.80011 -29.05935 -28.13338 -26.18567 -24.25070 -23.62746 -22.99480 -21.50603 -21.25083 -20.57405 -19.33291 -18.75774 -17.97963 -17.61174 -16.94778 -16.70421 -16.38467 -16.00824 -15.93426 -15.71747 -15.61571 -15.35677 -14.92322 -14.62070 -14.41407 -14.20411 -14.06646 -13.91124 -13.70711 -13.45625 -13.36660 -13.06822 -13.02785 -12.93200 -12.85118 -12.52889 -12.32414 -12.08249 -11.92447 -11.82076 -11.51919 -11.01527 -10.83632 -10.48442 -10.28852 -9.87304 -9.65934 -9.59503 -9.48133 -9.00174 -7.93342 -5.19760 -0.20524 0.48682 0.60627 0.67898 0.77277 1.39389 1.44035 1.50079 1.77486 1.79882 2.49381 2.56975 3.03605 3.17963 3.40391 3.84111 3.87321 4.05599 4.08030 4.18358 4.23223 4.27494 4.34301 4.38141 4.41776 4.49684 4.51940 4.53638 4.63342 4.69996 4.81889 4.86402 4.92546 5.00430 5.13506 5.24094 5.26091 5.32381 5.56558 5.61147 5.73042 5.77248 5.96355 6.27089 6.30999 6.73869 6.93331 7.39089 7.41887 8.03803 8.33060 9.28469 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.003007 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.661804 B = 9309.791606 C =10640.918734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.026 3.974 3 N -0.497 5.497 4 C 0.063 3.937 5 C -0.063 4.063 6 C 0.510 3.490 7 O -0.580 6.580 8 N -0.701 5.701 9 C 0.130 3.870 10 C 0.201 3.799 11 H 0.098 0.902 12 N -0.712 5.712 13 C -0.201 4.201 14 H 0.053 0.947 15 C -0.054 4.054 16 N -0.955 5.955 17 Si 0.939 3.061 18 H -0.285 1.285 19 H -0.296 1.296 20 H -0.294 1.294 21 C -0.096 4.096 22 C -0.134 4.134 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.099 4.099 27 C -0.256 4.256 28 S 0.154 5.846 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.111 0.889 34 H 0.410 0.590 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.382 0.618 38 H 0.249 0.751 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.128 0.872 43 H 0.105 0.895 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 -16.867 -6.527 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.252 4.252 3 N -0.212 5.212 4 C -0.069 4.069 5 C -0.105 4.105 6 C 0.297 3.703 7 O -0.460 6.460 8 N -0.352 5.352 9 C 0.004 3.996 10 C 0.091 3.909 11 H 0.116 0.884 12 N -0.352 5.352 13 C -0.333 4.333 14 H 0.071 0.929 15 C -0.247 4.247 16 N -0.606 5.606 17 Si 0.771 3.229 18 H -0.211 1.211 19 H -0.223 1.223 20 H -0.221 1.221 21 C -0.099 4.099 22 C -0.153 4.153 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.156 4.156 26 C -0.118 4.118 27 C -0.395 4.395 28 S 0.409 5.591 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.129 0.871 34 H 0.246 0.754 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.215 0.785 38 H 0.058 0.942 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.146 0.854 43 H 0.123 0.877 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.622 -17.562 -7.023 18.984 hybrid contribution 0.136 1.910 1.163 2.240 sum -1.486 -15.652 -5.860 16.779 Atomic orbital electron populations 1.20564 0.83757 1.04954 1.04471 1.27554 1.03212 0.91244 1.03148 1.66016 1.05771 1.33372 1.16089 1.19816 0.89811 0.94363 1.02943 1.20301 0.99645 0.92813 0.97753 1.20819 0.81335 0.81826 0.86354 1.90654 1.31662 1.74716 1.48973 1.45692 1.34965 1.23821 1.30734 1.21547 0.98654 0.90934 0.88458 1.19508 0.97623 0.89366 0.84373 0.88391 1.42354 1.07666 1.67509 1.17625 1.19026 0.87134 1.24193 1.02970 0.92920 1.25065 0.98152 1.02214 0.99272 1.69727 1.25644 1.46607 1.18607 0.85584 0.81621 0.77801 0.77857 1.21060 1.22339 1.22105 1.20676 0.98095 0.95603 0.95484 1.21293 0.99305 1.00440 0.94213 1.21374 1.00415 0.93613 0.99429 1.21364 0.98972 0.96369 0.98204 1.21361 0.99840 0.99830 0.94557 1.20994 0.99567 0.93444 0.97785 1.27143 1.05063 0.94930 1.12325 1.83470 0.96540 1.11150 1.67956 0.89160 0.87298 0.90318 0.83463 0.87114 0.75387 0.91266 0.95297 0.78453 0.94214 0.85572 0.84043 0.83939 0.85419 0.87732 0.77461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.46 71.24 0.75 -0.71 16 2 C 0.03 0.68 7.39 88.52 0.65 1.34 16 3 N -0.50 -16.59 9.68 -179.39 -1.74 -18.33 16 4 C 0.06 1.79 5.64 41.52 0.23 2.02 16 5 C -0.06 -1.67 6.20 29.10 0.18 -1.49 16 6 C 0.51 17.95 7.80 87.66 0.68 18.63 16 7 O -0.58 -25.25 15.44 -3.02 -0.05 -25.30 16 8 N -0.70 -23.64 5.39 -463.07 -2.49 -26.13 16 9 C 0.13 4.72 3.88 86.38 0.34 5.05 16 10 C 0.20 7.18 3.26 44.24 0.14 7.33 16 11 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 12 N -0.71 -31.19 3.82 -326.50 -1.25 -32.43 16 13 C -0.20 -10.40 8.63 84.03 0.72 -9.67 16 14 H 0.05 2.91 6.91 -2.91 -0.02 2.89 16 15 C -0.05 -2.96 5.50 84.86 0.47 -2.49 16 16 N -0.95 -54.40 13.06 21.65 0.28 -54.12 16 17 Si 0.94 46.79 29.55 68.60 2.03 48.82 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 20 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 21 C -0.10 -3.46 5.19 -19.87 -0.10 -3.57 16 22 C -0.13 -4.28 9.14 22.27 0.20 -4.08 16 23 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 24 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 25 C -0.14 -4.45 10.05 22.27 0.22 -4.22 16 26 C -0.10 -3.76 9.00 22.27 0.20 -3.56 16 27 C -0.26 -5.40 11.07 66.77 0.74 -4.66 16 28 S 0.15 2.93 23.18 -56.49 -1.31 1.62 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.11 1.28 8.14 -2.38 -0.02 1.27 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.15 2.53 8.03 -2.39 -0.02 2.51 16 33 H 0.11 2.93 8.14 -2.39 -0.02 2.92 16 34 H 0.41 12.63 8.14 -92.71 -0.75 11.87 16 35 H 0.07 2.30 6.85 -2.39 -0.02 2.28 16 36 H 0.03 1.28 7.14 -2.38 -0.02 1.26 16 37 H 0.38 17.64 8.04 -92.70 -0.75 16.89 16 38 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 39 H 0.13 3.72 6.22 -2.91 -0.02 3.70 16 40 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 41 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 42 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.10 4.45 7.50 -2.91 -0.02 4.42 16 44 H 0.21 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -73.42 384.82 0.90 -72.52 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: -0.45 Total: 40.30 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.88 Total: -6.95 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -5.19 Total: -131.02 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.31 Total: 1.62 kcal Total: -73.42 0.90 -72.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317727271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.663 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds