Wall clock time and date at job start Sat Apr 11 2020 07:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47089 * 2 1 4 4 N 1.46503 * 109.46934 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99652 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00191 * 0.02562 * 5 4 3 7 7 C 1.38815 * 119.99449 * 180.02562 * 5 4 3 8 8 N 1.31620 * 120.00344 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99803 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99839 * 9 7 5 11 11 H 1.48499 * 109.47270 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47196 * 300.00125 * 9 7 5 13 13 N 1.46503 * 109.47076 * 120.00602 * 2 1 3 14 14 C 1.34777 * 119.99851 * 295.77218 * 13 2 1 15 15 O 1.21594 * 119.99857 * 5.01122 * 14 13 2 16 16 C 1.47560 * 119.99860 * 185.00927 * 14 13 2 17 17 C 1.40116 * 120.58817 * 0.02562 * 16 14 13 18 18 N 1.30613 * 121.16907 * 179.97438 * 17 16 14 19 19 C 1.34914 * 122.44740 * 0.02562 * 18 17 16 20 20 C 1.40616 * 128.45561 * 179.97438 * 19 18 17 21 21 C 1.32291 * 115.90420 * 180.02562 * 20 19 18 22 22 S 1.75499 * 110.83766 * 359.97438 * 21 20 19 23 23 C 1.40097 * 119.27263 * 359.97438 * 19 18 17 24 24 C 1.39362 * 119.74910 * 359.75035 * 23 19 18 25 25 C 1.53005 * 109.46869 * 240.00426 * 2 1 3 26 26 C 1.52995 * 117.49900 * 12.84541 * 25 2 1 27 27 C 1.53004 * 117.49870 * 304.18402 * 25 2 1 28 28 H 1.09003 * 109.47311 * 59.99711 * 1 2 3 29 29 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47001 * 299.99642 * 1 2 3 31 31 H 1.08994 * 109.47452 * 300.00564 * 3 2 1 32 32 H 1.09005 * 109.46776 * 60.00601 * 3 2 1 33 33 H 0.97000 * 120.00083 * 0.02562 * 4 3 2 34 34 H 0.97000 * 120.00152 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00114 * 115.77936 * 13 2 1 36 36 H 1.07998 * 119.41540 * 359.95983 * 17 16 14 37 37 H 1.07992 * 122.04918 * 359.97438 * 20 19 18 38 38 H 1.08004 * 124.57982 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.73295 * 180.26142 * 24 23 19 40 40 H 1.08995 * 115.54887 * 158.51911 * 25 2 1 41 41 H 1.09000 * 117.50034 * 0.02562 * 26 25 2 42 42 H 1.09005 * 117.49917 * 145.02354 * 26 25 2 43 43 H 1.08993 * 117.50086 * 214.97931 * 27 25 2 44 44 H 1.09007 * 117.49793 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1897 2.6284 0.0013 6 1 3.6497 3.5637 0.0017 7 6 5.5778 2.6283 0.0013 8 7 6.2359 1.4884 0.0002 9 14 6.5119 4.2460 0.0029 10 1 6.1531 5.0236 1.2161 11 1 7.9719 3.9747 0.0021 12 1 6.1532 5.0260 -1.2089 13 7 2.0183 -0.6908 1.1961 14 6 1.7645 -0.1828 2.4184 15 8 1.0540 0.7972 2.5340 16 6 2.3487 -0.8161 3.6164 17 6 3.1694 -1.9455 3.4974 18 7 3.6928 -2.5147 4.5500 19 6 3.4790 -2.0581 5.8014 20 6 3.9738 -2.5680 7.0149 21 6 3.6034 -1.9209 8.1076 22 16 2.5644 -0.5642 7.7078 23 6 2.6674 -0.9318 5.9904 24 6 2.0980 -0.2970 4.8881 25 6 2.0400 -0.7212 -1.2494 26 6 1.0279 -1.0133 -2.3589 27 6 1.5565 -2.1536 -1.4850 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 3.9900 0.6024 0.0006 34 1 7.2059 1.4884 -0.0001 35 1 2.5244 -1.5135 1.1084 36 1 3.3726 -2.3526 2.5180 37 1 4.6162 -3.4353 7.0525 38 1 3.9002 -2.1911 9.1103 39 1 1.4734 0.5748 5.0151 40 1 3.0594 -0.4784 -1.5491 41 1 -0.0011 -0.6914 -2.1991 42 1 1.3817 -0.9631 -3.3888 43 1 2.2577 -2.8529 -1.9402 44 1 0.8748 -2.5820 -0.7502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318712259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:36 Heat of formation + Delta-G solvation = 71.328268 kcal Electronic energy + Delta-G solvation = -27891.289854 eV Core-core repulsion = 24129.767354 eV Total energy + Delta-G solvation = -3761.522499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.80749 -39.77705 -37.78866 -35.78264 -34.67300 -33.54183 -32.57002 -31.47155 -30.15803 -29.17004 -25.91236 -25.16651 -24.03951 -23.38760 -22.40364 -22.05732 -21.71935 -20.37105 -18.90246 -18.50608 -17.17559 -17.09498 -16.76752 -16.22567 -15.62351 -15.20240 -15.00732 -14.61159 -14.48019 -14.24449 -14.17090 -13.73085 -13.29676 -13.18233 -12.97027 -12.77931 -12.61757 -12.36493 -12.11342 -11.97292 -11.81072 -11.40990 -11.30518 -11.07304 -10.87314 -10.78232 -10.75104 -10.52807 -10.21022 -10.10146 -9.87645 -9.78983 -9.64207 -9.32012 -8.91530 -8.75438 -8.62322 -8.19339 -6.81947 -5.71317 -2.97494 0.07460 0.95225 1.17772 1.63971 1.78948 3.05581 3.27102 3.47764 3.51848 3.53127 3.82605 3.91677 4.07001 4.47664 4.64105 4.67496 4.74918 4.79157 4.87934 5.03737 5.07640 5.17963 5.27754 5.37331 5.45600 5.50048 5.63585 5.65081 5.69771 5.77318 5.84829 5.95198 5.97106 6.03929 6.20098 6.24842 6.27610 6.30434 6.43215 6.54358 6.69203 6.88766 7.09968 7.66297 7.76215 7.81469 8.48089 8.48676 9.59651 10.17363 10.53229 11.51707 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008576 B = 0.003848 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.021029 B = 7275.368284 C = 9248.483895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.203 3.797 3 C 0.142 3.858 4 N -0.726 5.726 5 C -0.231 4.231 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.702 5.702 14 C 0.575 3.425 15 O -0.527 6.527 16 C -0.165 4.165 17 C 0.163 3.837 18 N -0.460 5.460 19 C 0.140 3.860 20 C -0.116 4.116 21 C -0.171 4.171 22 S 0.118 5.882 23 C -0.208 4.208 24 C 0.028 3.972 25 C -0.151 4.151 26 C -0.171 4.171 27 C -0.184 4.184 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.049 0.951 33 H 0.382 0.618 34 H 0.254 0.746 35 H 0.396 0.604 36 H 0.167 0.833 37 H 0.154 0.846 38 H 0.177 0.823 39 H 0.152 0.848 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.571 -11.916 10.147 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.118 3.882 3 C 0.014 3.986 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.585 5.585 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 N -0.353 5.353 14 C 0.361 3.639 15 O -0.404 6.404 16 C -0.174 4.174 17 C -0.009 4.009 18 N -0.168 5.168 19 C 0.006 3.994 20 C -0.147 4.147 21 C -0.307 4.307 22 S 0.381 5.619 23 C -0.325 4.325 24 C -0.003 4.003 25 C -0.169 4.169 26 C -0.209 4.209 27 C -0.221 4.221 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.216 0.784 34 H 0.063 0.937 35 H 0.231 0.769 36 H 0.184 0.816 37 H 0.171 0.829 38 H 0.194 0.806 39 H 0.170 0.830 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.189 -10.677 11.110 19.043 hybrid contribution 1.470 -0.070 -0.828 1.689 sum -9.719 -10.747 10.281 17.767 Atomic orbital electron populations 1.22286 0.94686 1.01651 1.03464 1.20071 0.93064 0.93287 0.81802 1.21089 0.86534 0.91510 0.99511 1.42230 0.99127 1.06187 1.89469 1.19181 0.88991 0.86191 1.41915 0.91427 1.24665 0.96292 0.96629 1.03401 1.69630 1.06707 1.23811 1.58341 0.86307 0.78956 0.83378 0.77819 1.21428 1.21786 1.21347 1.45805 1.56721 1.27734 1.05027 1.17583 0.80417 0.83362 0.82556 1.90723 1.37726 1.25747 1.86231 1.20991 1.02744 0.99160 0.94508 1.22862 0.90107 0.90631 0.97307 1.67568 1.21232 1.30793 0.97227 1.19245 0.95222 0.92188 0.92708 1.19647 1.03075 1.02781 0.89177 1.25395 1.02891 0.99462 1.02964 1.84287 1.50867 1.30597 0.96188 1.23514 1.07024 1.02802 0.99191 1.20968 0.93674 0.96719 0.88894 1.22576 1.00862 0.96992 0.96486 1.23057 0.99273 1.02668 0.95882 1.22976 1.04039 0.91535 1.03590 0.91479 0.92857 0.90474 0.95702 0.93372 0.78405 0.93656 0.76863 0.81646 0.82860 0.80583 0.82999 0.85867 0.88236 0.88855 0.88830 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 7.11 37.16 0.26 -2.01 16 2 C 0.20 3.25 0.54 -131.82 -0.07 3.18 16 3 C 0.14 2.97 4.90 -4.04 -0.02 2.96 16 4 N -0.73 -18.21 5.04 -59.91 -0.30 -18.52 16 5 C -0.23 -6.59 9.99 -15.06 -0.15 -6.74 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 8 N -0.94 -28.20 13.06 55.49 0.72 -27.48 16 9 Si 0.90 22.97 29.55 -169.99 -5.02 17.95 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 N -0.70 -10.75 4.68 -48.62 -0.23 -10.98 16 14 C 0.58 9.78 7.18 -12.46 -0.09 9.69 16 15 O -0.53 -10.32 12.64 5.28 0.07 -10.26 16 16 C -0.17 -2.55 5.89 -104.87 -0.62 -3.17 16 17 C 0.16 2.32 10.69 -17.37 -0.19 2.13 16 18 N -0.46 -6.83 10.39 -11.01 -0.11 -6.95 16 19 C 0.14 1.94 6.97 -84.92 -0.59 1.35 16 20 C -0.12 -1.24 10.16 -40.61 -0.41 -1.65 16 21 C -0.17 -1.48 11.08 28.81 0.32 -1.16 16 22 S 0.12 1.21 23.29 -107.50 -2.50 -1.29 16 23 C -0.21 -2.83 6.49 -38.47 -0.25 -3.07 16 24 C 0.03 0.41 9.73 -38.65 -0.38 0.03 16 25 C -0.15 -2.20 4.86 -90.62 -0.44 -2.64 16 26 C -0.17 -2.06 9.64 -26.69 -0.26 -2.32 16 27 C -0.18 -2.09 9.72 -26.69 -0.26 -2.35 16 28 H 0.07 0.87 6.78 -51.93 -0.35 0.51 16 29 H 0.05 0.65 6.98 -51.93 -0.36 0.28 16 30 H 0.08 1.22 6.31 -51.93 -0.33 0.89 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.13 6.04 -51.93 -0.31 0.81 16 33 H 0.38 9.82 6.62 -40.82 -0.27 9.55 16 34 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.40 5.18 6.45 -40.82 -0.26 4.91 16 36 H 0.17 1.93 6.42 -52.49 -0.34 1.59 16 37 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.18 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.15 2.14 7.72 -52.49 -0.41 1.74 16 40 H 0.12 2.19 7.09 -51.93 -0.37 1.83 16 41 H 0.10 1.11 5.88 -51.93 -0.31 0.80 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.09 0.96 7.34 -51.92 -0.38 0.58 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -33.67 370.72 -10.37 -44.04 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -5.35 Total: 14.19 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.23 Total: -6.29 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 0.08 Total: -63.92 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.50 Total: -1.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.67 -10.37 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318712259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.367 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds