Wall clock time and date at job start Sat Apr 11 2020 07:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47089 * 2 1 4 4 N 1.46503 * 109.46934 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99652 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00191 * 0.02562 * 5 4 3 7 7 C 1.38815 * 119.99449 * 180.02562 * 5 4 3 8 8 N 1.31620 * 120.00344 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99803 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99839 * 9 7 5 11 11 H 1.48499 * 109.47270 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47196 * 300.00125 * 9 7 5 13 13 N 1.46503 * 109.47076 * 120.00602 * 2 1 3 14 14 C 1.34777 * 119.99851 * 295.77218 * 13 2 1 15 15 O 1.21594 * 119.99857 * 5.01122 * 14 13 2 16 16 C 1.47560 * 119.99860 * 185.00927 * 14 13 2 17 17 C 1.40116 * 120.58817 * 0.02562 * 16 14 13 18 18 N 1.30613 * 121.16907 * 179.97438 * 17 16 14 19 19 C 1.34914 * 122.44740 * 0.02562 * 18 17 16 20 20 C 1.40616 * 128.45561 * 179.97438 * 19 18 17 21 21 C 1.32291 * 115.90420 * 180.02562 * 20 19 18 22 22 S 1.75499 * 110.83766 * 359.97438 * 21 20 19 23 23 C 1.40097 * 119.27263 * 359.97438 * 19 18 17 24 24 C 1.39362 * 119.74910 * 359.75035 * 23 19 18 25 25 C 1.53005 * 109.46869 * 240.00426 * 2 1 3 26 26 C 1.52995 * 117.49900 * 12.84541 * 25 2 1 27 27 C 1.53004 * 117.49870 * 304.18402 * 25 2 1 28 28 H 1.09003 * 109.47311 * 59.99711 * 1 2 3 29 29 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47001 * 299.99642 * 1 2 3 31 31 H 1.08994 * 109.47452 * 300.00564 * 3 2 1 32 32 H 1.09005 * 109.46776 * 60.00601 * 3 2 1 33 33 H 0.97000 * 120.00083 * 0.02562 * 4 3 2 34 34 H 0.97000 * 120.00152 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00114 * 115.77936 * 13 2 1 36 36 H 1.07998 * 119.41540 * 359.95983 * 17 16 14 37 37 H 1.07992 * 122.04918 * 359.97438 * 20 19 18 38 38 H 1.08004 * 124.57982 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.73295 * 180.26142 * 24 23 19 40 40 H 1.08995 * 115.54887 * 158.51911 * 25 2 1 41 41 H 1.09000 * 117.50034 * 0.02562 * 26 25 2 42 42 H 1.09005 * 117.49917 * 145.02354 * 26 25 2 43 43 H 1.08993 * 117.50086 * 214.97931 * 27 25 2 44 44 H 1.09007 * 117.49793 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1897 2.6284 0.0013 6 1 3.6497 3.5637 0.0017 7 6 5.5778 2.6283 0.0013 8 7 6.2359 1.4884 0.0002 9 14 6.5119 4.2460 0.0029 10 1 6.1531 5.0236 1.2161 11 1 7.9719 3.9747 0.0021 12 1 6.1532 5.0260 -1.2089 13 7 2.0183 -0.6908 1.1961 14 6 1.7645 -0.1828 2.4184 15 8 1.0540 0.7972 2.5340 16 6 2.3487 -0.8161 3.6164 17 6 3.1694 -1.9455 3.4974 18 7 3.6928 -2.5147 4.5500 19 6 3.4790 -2.0581 5.8014 20 6 3.9738 -2.5680 7.0149 21 6 3.6034 -1.9209 8.1076 22 16 2.5644 -0.5642 7.7078 23 6 2.6674 -0.9318 5.9904 24 6 2.0980 -0.2970 4.8881 25 6 2.0400 -0.7212 -1.2494 26 6 1.0279 -1.0133 -2.3589 27 6 1.5565 -2.1536 -1.4850 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 3.9900 0.6024 0.0006 34 1 7.2059 1.4884 -0.0001 35 1 2.5244 -1.5135 1.1084 36 1 3.3726 -2.3526 2.5180 37 1 4.6162 -3.4353 7.0525 38 1 3.9002 -2.1911 9.1103 39 1 1.4734 0.5748 5.0151 40 1 3.0594 -0.4784 -1.5491 41 1 -0.0011 -0.6914 -2.1991 42 1 1.3817 -0.9631 -3.3888 43 1 2.2577 -2.8529 -1.9402 44 1 0.8748 -2.5820 -0.7502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318712259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:35 Heat of formation + Delta-G solvation = 49.403266 kcal Electronic energy + Delta-G solvation = -27892.240593 eV Core-core repulsion = 24129.767354 eV Total energy + Delta-G solvation = -3762.473239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95655 -40.95298 -38.99801 -36.73802 -36.35026 -35.08640 -33.68857 -33.15573 -31.67581 -30.32380 -27.58207 -26.30153 -25.27775 -24.66578 -24.08633 -23.13198 -22.69198 -21.47783 -20.24733 -19.58999 -19.23179 -18.14444 -17.84192 -17.22504 -16.85583 -16.74068 -16.27182 -16.15808 -15.82331 -15.45705 -15.28973 -15.03441 -14.92391 -14.41801 -14.21113 -13.94753 -13.79419 -13.69720 -13.62989 -13.18564 -13.08406 -12.81250 -12.76726 -12.47639 -12.26700 -12.13506 -12.05214 -12.00588 -11.77856 -11.59355 -11.28972 -11.07470 -10.98243 -10.84830 -10.48531 -10.07720 -9.79883 -9.07015 -8.93497 -7.95163 -5.20859 -0.93910 -0.12691 0.28542 0.80872 0.86351 1.42823 1.45457 1.51454 1.84960 2.08721 2.54443 2.68999 2.95627 3.03532 3.37400 3.48556 3.55725 3.65663 3.67418 3.89646 3.95102 3.96594 4.06676 4.19080 4.26345 4.38199 4.47978 4.61412 4.65417 4.76045 4.81469 4.88505 4.89926 4.92257 5.00563 5.04962 5.05489 5.15115 5.27913 5.30999 5.35595 5.45692 5.49536 5.63207 6.27155 6.55220 6.61316 7.20571 7.34839 8.10245 8.38222 9.27476 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008576 B = 0.003848 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.021029 B = 7275.368284 C = 9248.483895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.211 3.789 3 C 0.143 3.857 4 N -0.729 5.729 5 C -0.244 4.244 6 H 0.063 0.937 7 C -0.068 4.068 8 N -0.962 5.962 9 Si 0.965 3.035 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.277 1.277 13 N -0.695 5.695 14 C 0.571 3.429 15 O -0.561 6.561 16 C -0.189 4.189 17 C 0.162 3.838 18 N -0.478 5.478 19 C 0.129 3.871 20 C -0.141 4.141 21 C -0.138 4.138 22 S 0.143 5.857 23 C -0.234 4.234 24 C 0.020 3.980 25 C -0.177 4.177 26 C -0.162 4.162 27 C -0.157 4.157 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.377 0.623 34 H 0.250 0.750 35 H 0.407 0.593 36 H 0.184 0.816 37 H 0.173 0.827 38 H 0.221 0.779 39 H 0.148 0.852 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 -13.313 11.248 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.126 3.874 3 C 0.015 3.985 4 N -0.372 5.372 5 C -0.376 4.376 6 H 0.081 0.919 7 C -0.260 4.260 8 N -0.613 5.613 9 Si 0.795 3.205 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.203 1.203 13 N -0.345 5.345 14 C 0.358 3.642 15 O -0.442 6.442 16 C -0.197 4.197 17 C -0.010 4.010 18 N -0.186 5.186 19 C -0.005 4.005 20 C -0.171 4.171 21 C -0.275 4.275 22 S 0.406 5.594 23 C -0.351 4.351 24 C -0.010 4.010 25 C -0.196 4.196 26 C -0.199 4.199 27 C -0.193 4.193 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.211 0.789 34 H 0.059 0.941 35 H 0.244 0.756 36 H 0.201 0.799 37 H 0.191 0.809 38 H 0.238 0.762 39 H 0.166 0.834 40 H 0.105 0.895 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.533 -12.087 12.201 20.688 hybrid contribution 1.548 0.382 -1.031 1.899 sum -9.985 -11.705 11.170 19.013 Atomic orbital electron populations 1.22210 0.92673 1.03213 1.03063 1.19896 0.94335 0.90392 0.82769 1.21127 0.84286 0.95222 0.97851 1.42291 1.00739 1.05028 1.89131 1.19503 0.89646 0.87216 1.41215 0.91875 1.25392 0.97062 0.99746 1.03845 1.69771 1.06522 1.25523 1.59499 0.85337 0.77425 0.79814 0.77957 1.21235 1.21745 1.20333 1.45770 1.56394 1.27868 1.04489 1.17893 0.79931 0.82954 0.83376 1.90695 1.39395 1.27281 1.86796 1.20908 1.04333 1.00336 0.94138 1.23100 0.89586 0.90193 0.98148 1.67606 1.21830 1.31333 0.97852 1.19848 0.95011 0.92246 0.93389 1.19864 1.04584 1.04290 0.88337 1.25954 1.00027 0.97137 1.04351 1.84251 1.50785 1.31056 0.93299 1.23759 1.07328 1.03121 1.00871 1.21055 0.93715 0.96706 0.89480 1.22252 0.99887 1.00326 0.97099 1.23190 0.99058 1.02195 0.95442 1.23073 1.03421 0.89915 1.02940 0.90245 0.90204 0.92515 0.96094 0.95909 0.78945 0.94082 0.75601 0.79901 0.80947 0.76236 0.83420 0.89472 0.86833 0.88322 0.87681 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 7.11 71.98 0.51 -3.66 16 2 C 0.21 6.85 0.54 3.60 0.00 6.85 16 3 C 0.14 6.24 4.90 86.38 0.42 6.66 16 4 N -0.73 -38.00 5.04 -343.45 -1.73 -39.73 16 5 C -0.24 -14.28 9.99 84.03 0.84 -13.44 16 6 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 7 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 8 N -0.96 -59.19 13.06 21.65 0.28 -58.91 16 9 Si 0.97 47.88 29.55 68.60 2.03 49.90 16 10 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 11 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 N -0.69 -21.74 4.68 -426.01 -2.00 -23.74 16 14 C 0.57 20.32 7.18 86.70 0.62 20.94 16 15 O -0.56 -23.26 12.64 -4.01 -0.05 -23.31 16 16 C -0.19 -6.07 5.89 -20.03 -0.12 -6.19 16 17 C 0.16 4.71 10.69 85.33 0.91 5.62 16 18 N -0.48 -14.23 10.39 -188.73 -1.96 -16.19 16 19 C 0.13 3.51 6.97 39.70 0.28 3.79 16 20 C -0.14 -2.71 10.16 21.79 0.22 -2.49 16 21 C -0.14 -1.93 11.08 66.76 0.74 -1.19 16 22 S 0.14 2.68 23.29 -56.49 -1.32 1.36 16 23 C -0.23 -6.33 6.49 22.99 0.15 -6.18 16 24 C 0.02 0.63 9.73 22.88 0.22 0.85 16 25 C -0.18 -5.11 4.86 -10.79 -0.05 -5.16 16 26 C -0.16 -3.55 9.64 30.62 0.30 -3.26 16 27 C -0.16 -3.17 9.72 30.62 0.30 -2.87 16 28 H 0.08 1.94 6.78 -2.39 -0.02 1.92 16 29 H 0.08 1.75 6.98 -2.39 -0.02 1.73 16 30 H 0.06 1.81 6.31 -2.39 -0.02 1.79 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.02 1.13 6.04 -2.38 -0.01 1.12 16 33 H 0.38 20.19 6.62 -92.71 -0.61 19.58 16 34 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.41 10.72 6.45 -92.71 -0.60 10.12 16 36 H 0.18 4.33 6.42 -2.91 -0.02 4.31 16 37 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.22 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.15 4.48 7.72 -2.91 -0.02 4.46 16 40 H 0.09 3.20 7.09 -2.39 -0.02 3.19 16 41 H 0.11 2.19 5.88 -2.39 -0.01 2.18 16 42 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.11 1.88 7.34 -2.38 -0.02 1.87 16 Total: -1.00 -75.54 370.72 0.92 -74.62 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: -0.14 Total: 39.23 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 5.81 Total: -3.25 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -5.40 Total: -138.56 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.05 Total: -23.31 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.32 Total: 1.36 kcal Total: -75.54 0.92 -74.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318712259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.024 kcal (2) G-P(sol) polarization free energy of solvation -75.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds