Wall clock time and date at job start Sat Apr 11 2020 07:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 N 1.46495 * 109.47109 * 300.00174 * 3 2 1 5 5 C 1.36943 * 119.99921 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99775 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00198 * 180.02562 * 5 4 3 8 8 N 1.31618 * 120.00224 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00080 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46795 * 89.99935 * 9 7 5 11 11 H 1.48498 * 109.47138 * 210.00044 * 9 7 5 12 12 H 1.48503 * 109.46859 * 330.00295 * 9 7 5 13 13 N 1.46497 * 109.46783 * 240.00635 * 2 1 3 14 14 C 1.34784 * 119.99896 * 175.39322 * 13 2 1 15 15 O 1.21596 * 119.99903 * 355.81158 * 14 13 2 16 16 C 1.47552 * 119.99854 * 175.54388 * 14 13 2 17 17 C 1.40121 * 120.59420 * 0.26853 * 16 14 13 18 18 N 1.30615 * 121.17593 * 179.97438 * 17 16 14 19 19 C 1.34910 * 122.44721 * 0.02562 * 18 17 16 20 20 C 1.40619 * 128.46321 * 180.02562 * 19 18 17 21 21 C 1.32279 * 115.90924 * 179.97438 * 20 19 18 22 22 S 1.75498 * 110.84096 * 0.02562 * 21 20 19 23 23 C 1.40096 * 119.27083 * 0.02562 * 19 18 17 24 24 C 1.39369 * 119.74928 * 359.71872 * 23 19 18 25 25 C 1.52995 * 109.47559 * 120.00146 * 2 1 3 26 26 C 1.53000 * 117.49956 * 121.75772 * 25 2 1 27 27 C 1.52997 * 117.49850 * 53.13507 * 25 2 1 28 28 H 1.09006 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47300 * 299.99285 * 1 2 3 30 30 H 1.08999 * 109.47589 * 59.99647 * 1 2 3 31 31 H 1.08997 * 109.47051 * 60.00356 * 3 2 1 32 32 H 1.09001 * 109.47060 * 180.02562 * 3 2 1 33 33 H 0.96996 * 120.00577 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00108 * 180.02562 * 8 7 5 35 35 H 0.96995 * 120.00510 * 355.38599 * 13 2 1 36 36 H 1.07997 * 119.41322 * 359.97438 * 17 16 14 37 37 H 1.07996 * 122.03868 * 359.95845 * 20 19 18 38 38 H 1.08001 * 124.57593 * 180.02562 * 21 20 19 39 39 H 1.08010 * 120.72598 * 180.28317 * 24 23 19 40 40 H 1.09003 * 115.54970 * 267.46420 * 25 2 1 41 41 H 1.09001 * 117.49725 * 0.02562 * 26 25 2 42 42 H 1.08998 * 117.49574 * 145.02034 * 26 25 2 43 43 H 1.08999 * 117.50234 * 214.97734 * 27 25 2 44 44 H 1.08998 * 117.49893 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1331 -1.1961 5 6 1.8826 3.4441 -1.4131 6 1 2.5042 3.9687 -0.7026 7 6 1.4195 4.0986 -2.5461 8 7 1.7382 5.3584 -2.7549 9 14 0.3449 3.1910 -3.7755 10 1 -1.0826 3.3546 -3.4005 11 1 0.5671 3.7488 -5.1336 12 1 0.6961 1.7481 -3.7692 13 7 2.0182 -0.6905 -1.1962 14 6 3.3398 -0.7331 -1.4576 15 8 4.1205 -0.1345 -0.7428 16 6 3.8398 -1.5109 -2.6074 17 6 2.9513 -2.2053 -3.4391 18 7 3.3814 -2.8969 -4.4603 19 6 4.6903 -2.9858 -4.7746 20 6 5.2894 -3.6877 -5.8356 21 6 6.6072 -3.6042 -5.9129 22 16 7.2464 -2.6047 -4.6196 23 6 5.6320 -2.3158 -3.9827 24 6 5.2063 -1.5645 -2.8887 25 6 2.0401 -0.7212 1.2492 26 6 2.9491 -1.9345 1.0427 27 6 1.5080 -2.1303 1.5181 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 0.9935 1.6619 -1.8344 34 1 1.4142 5.8159 -3.5465 35 1 1.3905 -1.1171 -1.8002 36 1 1.8920 -2.1680 -3.2322 37 1 4.7089 -4.2602 -6.5439 38 1 7.2086 -4.0859 -6.6697 39 1 5.9183 -1.0380 -2.2703 40 1 2.2379 -0.0848 2.1117 41 1 3.1840 -2.2186 0.0169 42 1 3.7451 -2.0964 1.7694 43 1 1.3561 -2.4211 2.5575 44 1 0.7949 -2.5436 0.8049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318712260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:40 Heat of formation + Delta-G solvation = 83.176624 kcal Electronic energy + Delta-G solvation = -28226.838212 eV Core-core repulsion = 24465.829496 eV Total energy + Delta-G solvation = -3761.008716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06087 -40.03485 -37.40821 -35.86908 -35.15377 -33.53308 -32.69668 -31.74988 -30.37920 -29.45006 -26.38492 -25.29363 -24.05934 -23.51729 -22.26808 -22.06727 -21.17834 -20.76630 -19.30188 -18.65727 -17.79003 -17.14466 -16.87107 -16.38508 -16.01312 -15.37542 -14.97045 -14.63740 -14.41585 -14.27639 -14.13320 -13.77307 -13.59951 -13.40648 -13.04030 -12.87794 -12.83619 -12.30291 -12.23351 -12.10096 -11.93675 -11.60609 -11.39976 -11.27117 -11.05687 -10.90839 -10.85652 -10.65305 -10.25992 -10.19106 -10.12394 -9.81189 -9.54801 -9.40824 -9.03253 -8.79400 -8.74434 -8.30518 -7.11334 -5.70783 -3.04168 -0.05382 0.80576 1.06965 1.53749 1.67189 2.96488 3.16459 3.36015 3.37455 3.45512 3.68154 3.76318 3.91016 4.35244 4.52942 4.59327 4.62246 4.68677 4.75432 4.88277 4.98010 5.03299 5.18361 5.27853 5.39331 5.40807 5.54604 5.56349 5.61052 5.67091 5.68331 5.70458 5.82706 5.88964 6.02192 6.06978 6.15316 6.17636 6.23793 6.37582 6.47107 6.80156 7.05264 7.50678 7.65321 8.07298 8.38177 8.48351 9.28070 10.00118 10.20563 11.48284 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009389 B = 0.004086 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.644576 B = 6850.191763 C = 8552.965640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.197 3.803 3 C 0.144 3.856 4 N -0.750 5.750 5 C -0.232 4.232 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.881 3.119 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.280 1.280 13 N -0.714 5.714 14 C 0.573 3.427 15 O -0.508 6.508 16 C -0.172 4.172 17 C 0.157 3.843 18 N -0.460 5.460 19 C 0.140 3.860 20 C -0.118 4.118 21 C -0.169 4.169 22 S 0.125 5.875 23 C -0.209 4.209 24 C 0.031 3.969 25 C -0.143 4.143 26 C -0.164 4.164 27 C -0.182 4.182 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.357 0.643 34 H 0.258 0.742 35 H 0.393 0.607 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.178 0.822 39 H 0.155 0.845 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 -23.491 -0.454 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.111 3.889 3 C 0.016 3.984 4 N -0.396 5.396 5 C -0.363 4.363 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.585 5.585 9 Si 0.712 3.288 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.207 1.207 13 N -0.366 5.366 14 C 0.358 3.642 15 O -0.383 6.383 16 C -0.180 4.180 17 C -0.015 4.015 18 N -0.169 5.169 19 C 0.007 3.993 20 C -0.149 4.149 21 C -0.306 4.306 22 S 0.389 5.611 23 C -0.326 4.326 24 C 0.001 3.999 25 C -0.162 4.162 26 C -0.202 4.202 27 C -0.219 4.219 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.190 0.810 34 H 0.068 0.932 35 H 0.228 0.772 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.195 0.805 39 H 0.172 0.828 40 H 0.130 0.870 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.920 -22.881 -0.100 23.905 hybrid contribution -1.933 -0.632 -1.302 2.415 sum 4.987 -23.513 -1.403 24.077 Atomic orbital electron populations 1.22018 0.93064 1.01670 1.03981 1.20178 0.93751 0.92840 0.82095 1.21163 0.99740 0.87131 0.90339 1.42602 1.62030 1.11095 1.23852 1.19065 1.25865 0.85603 1.05724 0.89281 1.24630 1.00806 0.95823 0.98069 1.69695 1.50057 1.09747 1.29033 0.86596 0.81134 0.79117 0.81953 1.21118 1.21872 1.20665 1.45938 1.06725 1.57201 1.26752 1.17497 0.82808 0.80331 0.83523 1.90787 1.55732 1.42858 1.48940 1.21042 0.94524 1.02838 0.99633 1.22828 0.99838 0.90257 0.88600 1.67551 1.14571 1.17870 1.16880 1.19242 0.89138 0.96217 0.94739 1.19637 0.94074 1.02270 0.98891 1.25429 0.98176 1.03764 1.03201 1.84369 1.03555 1.49527 1.23689 1.23552 0.99185 1.06904 1.02949 1.21011 0.95321 0.91460 0.92156 1.22535 1.04090 0.90274 0.99337 1.22927 0.93037 1.02156 1.02038 1.22969 0.97389 0.99825 1.01676 0.92467 0.90368 0.91474 0.95112 0.91797 0.80996 0.93214 0.77190 0.81896 0.82848 0.80485 0.82776 0.86973 0.89194 0.89309 0.89162 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.18 37.16 0.30 -1.63 16 2 C 0.20 2.92 0.55 -131.82 -0.07 2.85 16 3 C 0.14 2.88 4.83 -4.04 -0.02 2.86 16 4 N -0.75 -17.86 4.98 -59.91 -0.30 -18.16 16 5 C -0.23 -6.74 10.47 -15.06 -0.16 -6.90 16 6 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 7 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 8 N -0.94 -30.09 13.97 55.49 0.78 -29.31 16 9 Si 0.88 22.40 27.74 -169.99 -4.71 17.68 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 12 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 13 N -0.71 -10.05 4.15 -48.63 -0.20 -10.25 16 14 C 0.57 9.07 4.78 -12.46 -0.06 9.01 16 15 O -0.51 -9.59 12.68 5.28 0.07 -9.52 16 16 C -0.17 -2.43 5.89 -104.88 -0.62 -3.05 16 17 C 0.16 2.00 10.69 -17.36 -0.19 1.81 16 18 N -0.46 -6.21 10.39 -11.01 -0.11 -6.33 16 19 C 0.14 1.79 6.97 -84.92 -0.59 1.20 16 20 C -0.12 -1.15 10.16 -40.61 -0.41 -1.56 16 21 C -0.17 -1.32 11.08 28.81 0.32 -1.00 16 22 S 0.13 1.19 23.29 -107.50 -2.50 -1.31 16 23 C -0.21 -2.62 6.49 -38.46 -0.25 -2.87 16 24 C 0.03 0.42 9.73 -38.64 -0.38 0.04 16 25 C -0.14 -1.87 4.86 -90.62 -0.44 -2.31 16 26 C -0.16 -2.05 8.53 -26.73 -0.23 -2.28 16 27 C -0.18 -1.91 9.68 -26.73 -0.26 -2.17 16 28 H 0.06 0.58 6.89 -51.93 -0.36 0.22 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.97 6.86 -51.93 -0.36 0.62 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.45 5.72 -51.93 -0.30 1.15 16 33 H 0.36 8.15 4.21 -40.82 -0.17 7.98 16 34 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 35 H 0.39 4.51 6.55 -40.82 -0.27 4.24 16 36 H 0.16 1.60 6.42 -52.49 -0.34 1.26 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.15 2.06 7.72 -52.48 -0.41 1.65 16 40 H 0.11 1.49 8.06 -51.93 -0.42 1.07 16 41 H 0.09 1.18 5.17 -51.93 -0.27 0.92 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 0.88 7.17 -51.93 -0.37 0.51 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -35.35 366.14 -10.00 -45.34 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.38 Total: 12.37 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -3.14 Total: -6.03 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: 0.16 Total: -64.05 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.50 Total: -1.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.35 -10.00 -45.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318712260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.520 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds