Wall clock time and date at job start Sat Apr 11 2020 07:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 N 1.46495 * 109.47109 * 300.00174 * 3 2 1 5 5 C 1.36943 * 119.99921 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99775 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00198 * 180.02562 * 5 4 3 8 8 N 1.31618 * 120.00224 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00080 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46795 * 89.99935 * 9 7 5 11 11 H 1.48498 * 109.47138 * 210.00044 * 9 7 5 12 12 H 1.48503 * 109.46859 * 330.00295 * 9 7 5 13 13 N 1.46497 * 109.46783 * 240.00635 * 2 1 3 14 14 C 1.34784 * 119.99896 * 175.39322 * 13 2 1 15 15 O 1.21596 * 119.99903 * 355.81158 * 14 13 2 16 16 C 1.47552 * 119.99854 * 175.54388 * 14 13 2 17 17 C 1.40121 * 120.59420 * 0.26853 * 16 14 13 18 18 N 1.30615 * 121.17593 * 179.97438 * 17 16 14 19 19 C 1.34910 * 122.44721 * 0.02562 * 18 17 16 20 20 C 1.40619 * 128.46321 * 180.02562 * 19 18 17 21 21 C 1.32279 * 115.90924 * 179.97438 * 20 19 18 22 22 S 1.75498 * 110.84096 * 0.02562 * 21 20 19 23 23 C 1.40096 * 119.27083 * 0.02562 * 19 18 17 24 24 C 1.39369 * 119.74928 * 359.71872 * 23 19 18 25 25 C 1.52995 * 109.47559 * 120.00146 * 2 1 3 26 26 C 1.53000 * 117.49956 * 121.75772 * 25 2 1 27 27 C 1.52997 * 117.49850 * 53.13507 * 25 2 1 28 28 H 1.09006 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47300 * 299.99285 * 1 2 3 30 30 H 1.08999 * 109.47589 * 59.99647 * 1 2 3 31 31 H 1.08997 * 109.47051 * 60.00356 * 3 2 1 32 32 H 1.09001 * 109.47060 * 180.02562 * 3 2 1 33 33 H 0.96996 * 120.00577 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00108 * 180.02562 * 8 7 5 35 35 H 0.96995 * 120.00510 * 355.38599 * 13 2 1 36 36 H 1.07997 * 119.41322 * 359.97438 * 17 16 14 37 37 H 1.07996 * 122.03868 * 359.95845 * 20 19 18 38 38 H 1.08001 * 124.57593 * 180.02562 * 21 20 19 39 39 H 1.08010 * 120.72598 * 180.28317 * 24 23 19 40 40 H 1.09003 * 115.54970 * 267.46420 * 25 2 1 41 41 H 1.09001 * 117.49725 * 0.02562 * 26 25 2 42 42 H 1.08998 * 117.49574 * 145.02034 * 26 25 2 43 43 H 1.08999 * 117.50234 * 214.97734 * 27 25 2 44 44 H 1.08998 * 117.49893 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1331 -1.1961 5 6 1.8826 3.4441 -1.4131 6 1 2.5042 3.9687 -0.7026 7 6 1.4195 4.0986 -2.5461 8 7 1.7382 5.3584 -2.7549 9 14 0.3449 3.1910 -3.7755 10 1 -1.0826 3.3546 -3.4005 11 1 0.5671 3.7488 -5.1336 12 1 0.6961 1.7481 -3.7692 13 7 2.0182 -0.6905 -1.1962 14 6 3.3398 -0.7331 -1.4576 15 8 4.1205 -0.1345 -0.7428 16 6 3.8398 -1.5109 -2.6074 17 6 2.9513 -2.2053 -3.4391 18 7 3.3814 -2.8969 -4.4603 19 6 4.6903 -2.9858 -4.7746 20 6 5.2894 -3.6877 -5.8356 21 6 6.6072 -3.6042 -5.9129 22 16 7.2464 -2.6047 -4.6196 23 6 5.6320 -2.3158 -3.9827 24 6 5.2063 -1.5645 -2.8887 25 6 2.0401 -0.7212 1.2492 26 6 2.9491 -1.9345 1.0427 27 6 1.5080 -2.1303 1.5181 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 0.9935 1.6619 -1.8344 34 1 1.4142 5.8159 -3.5465 35 1 1.3905 -1.1171 -1.8002 36 1 1.8920 -2.1680 -3.2322 37 1 4.7089 -4.2602 -6.5439 38 1 7.2086 -4.0859 -6.6697 39 1 5.9183 -1.0380 -2.2703 40 1 2.2379 -0.0848 2.1117 41 1 3.1840 -2.2186 0.0169 42 1 3.7451 -2.0964 1.7694 43 1 1.3561 -2.4211 2.5575 44 1 0.7949 -2.5436 0.8049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318712260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:39 Heat of formation + Delta-G solvation = 58.957039 kcal Electronic energy + Delta-G solvation = -28227.888452 eV Core-core repulsion = 24465.829496 eV Total energy + Delta-G solvation = -3762.058956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.13326 -41.06943 -38.56484 -36.75705 -36.71404 -35.02541 -33.72459 -33.49151 -31.90209 -30.47946 -27.90404 -26.26512 -25.33854 -24.86850 -23.21909 -23.03997 -22.73113 -21.74809 -20.58502 -19.76708 -19.66529 -18.07905 -17.83735 -17.32344 -17.14576 -16.76014 -16.42297 -15.97176 -15.63967 -15.41768 -15.20193 -15.03638 -14.99481 -14.72639 -14.38644 -13.99380 -13.76846 -13.64569 -13.57439 -13.38594 -13.22416 -12.87423 -12.80879 -12.42853 -12.33189 -12.12788 -12.11556 -11.97944 -11.82626 -11.62396 -11.37931 -11.19405 -10.98486 -10.79739 -10.46294 -10.10477 -9.84034 -9.22732 -9.10304 -8.03158 -5.35008 -0.96594 -0.15566 0.26545 0.79633 0.84716 1.30619 1.37724 1.44149 1.88903 2.04584 2.46253 2.66046 2.90359 2.96021 3.27746 3.45643 3.50887 3.54070 3.64684 3.90440 3.93025 3.95942 3.98150 4.06850 4.25637 4.34163 4.38560 4.55036 4.62933 4.70005 4.80396 4.84086 4.88979 4.90707 4.96134 5.02936 5.07909 5.20028 5.25343 5.28801 5.30897 5.34220 5.62322 5.75744 6.19880 6.51619 6.57623 7.07899 7.22738 7.82882 8.06161 9.19265 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009389 B = 0.004086 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.644576 B = 6850.191763 C = 8552.965640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.206 3.794 3 C 0.142 3.858 4 N -0.744 5.744 5 C -0.229 4.229 6 H 0.045 0.955 7 C -0.066 4.066 8 N -0.987 5.987 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.300 1.300 12 H -0.250 1.250 13 N -0.705 5.705 14 C 0.572 3.428 15 O -0.550 6.550 16 C -0.192 4.192 17 C 0.160 3.840 18 N -0.475 5.475 19 C 0.131 3.869 20 C -0.140 4.140 21 C -0.139 4.139 22 S 0.138 5.862 23 C -0.233 4.233 24 C 0.020 3.980 25 C -0.161 4.161 26 C -0.176 4.176 27 C -0.145 4.145 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.034 0.966 33 H 0.366 0.634 34 H 0.257 0.743 35 H 0.409 0.591 36 H 0.191 0.809 37 H 0.175 0.825 38 H 0.220 0.780 39 H 0.144 0.856 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 -27.409 -2.104 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.121 3.879 3 C 0.015 3.985 4 N -0.390 5.390 5 C -0.360 4.360 6 H 0.063 0.937 7 C -0.257 4.257 8 N -0.638 5.638 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.227 1.227 12 H -0.174 1.174 13 N -0.358 5.358 14 C 0.359 3.641 15 O -0.428 6.428 16 C -0.200 4.200 17 C -0.012 4.012 18 N -0.183 5.183 19 C -0.003 4.003 20 C -0.169 4.169 21 C -0.275 4.275 22 S 0.402 5.598 23 C -0.350 4.350 24 C -0.010 4.010 25 C -0.181 4.181 26 C -0.213 4.213 27 C -0.182 4.182 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.200 0.800 34 H 0.066 0.934 35 H 0.247 0.753 36 H 0.208 0.792 37 H 0.192 0.808 38 H 0.236 0.764 39 H 0.162 0.838 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.127 0.873 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.430 -26.862 -1.730 27.460 hybrid contribution -1.250 0.606 -0.755 1.581 sum 4.180 -26.257 -2.485 26.703 Atomic orbital electron populations 1.22027 0.90851 1.04039 1.03469 1.19985 0.95172 0.89463 0.83327 1.21216 0.98050 0.90720 0.88529 1.42463 1.61970 1.09381 1.25191 1.18993 1.24590 0.87651 1.04780 0.93661 1.25512 1.02957 0.96765 1.00487 1.69904 1.52037 1.11979 1.29925 0.85421 0.79367 0.79153 0.77970 1.19405 1.22669 1.17438 1.45859 1.06514 1.56642 1.26800 1.17794 0.83020 0.79768 0.83483 1.90770 1.56823 1.44753 1.50493 1.20940 0.95033 1.04145 0.99924 1.23185 1.00782 0.89358 0.87905 1.67617 1.15120 1.18399 1.17188 1.19812 0.89071 0.96081 0.95334 1.19866 0.94891 1.03209 0.98978 1.25955 0.97803 1.01448 1.02317 1.84383 1.01796 1.49567 1.24083 1.23756 1.01130 1.07224 1.02925 1.21062 0.95424 0.91770 0.92700 1.22410 1.06068 0.91306 0.98299 1.22918 0.94489 1.02175 1.01751 1.23077 0.95759 0.96234 1.03145 0.88614 0.90135 0.92757 0.95684 0.94835 0.79968 0.93445 0.75348 0.79205 0.80802 0.76353 0.83796 0.87868 0.89947 0.89666 0.87329 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.18 71.98 0.59 -2.77 16 2 C 0.21 5.93 0.55 3.60 0.00 5.93 16 3 C 0.14 5.86 4.83 86.38 0.42 6.27 16 4 N -0.74 -35.82 4.98 -343.46 -1.71 -37.53 16 5 C -0.23 -13.78 10.47 84.03 0.88 -12.90 16 6 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 7 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 8 N -0.99 -65.64 13.97 21.65 0.30 -65.34 16 9 Si 0.95 46.11 27.74 68.60 1.90 48.01 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 12 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16 13 N -0.71 -18.97 4.15 -426.02 -1.77 -20.74 16 14 C 0.57 18.36 4.78 86.70 0.41 18.77 16 15 O -0.55 -21.92 12.68 -4.02 -0.05 -21.97 16 16 C -0.19 -5.45 5.89 -20.03 -0.12 -5.56 16 17 C 0.16 3.85 10.69 85.33 0.91 4.76 16 18 N -0.47 -12.06 10.39 -188.73 -1.96 -14.02 16 19 C 0.13 3.15 6.97 39.70 0.28 3.42 16 20 C -0.14 -2.32 10.16 21.79 0.22 -2.10 16 21 C -0.14 -1.68 11.08 66.76 0.74 -0.94 16 22 S 0.14 2.40 23.29 -56.49 -1.32 1.09 16 23 C -0.23 -5.76 6.49 22.99 0.15 -5.61 16 24 C 0.02 0.58 9.73 22.88 0.22 0.80 16 25 C -0.16 -4.07 4.86 -10.80 -0.05 -4.12 16 26 C -0.18 -4.24 8.53 30.59 0.26 -3.98 16 27 C -0.15 -2.59 9.68 30.59 0.30 -2.30 16 28 H 0.10 1.47 6.89 -2.38 -0.02 1.46 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.40 6.86 -2.39 -0.02 1.39 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.03 1.62 5.72 -2.39 -0.01 1.61 16 33 H 0.37 16.22 4.21 -92.71 -0.39 15.83 16 34 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 35 H 0.41 8.24 6.55 -92.71 -0.61 7.63 16 36 H 0.19 3.21 6.42 -2.91 -0.02 3.19 16 37 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.22 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.14 4.19 7.72 -2.91 -0.02 4.17 16 40 H 0.10 2.76 8.06 -2.39 -0.02 2.74 16 41 H 0.08 2.13 5.17 -2.39 -0.01 2.12 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.11 1.58 7.17 -2.39 -0.02 1.57 16 Total: -1.00 -81.75 366.14 1.09 -80.67 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.01 Total: 33.76 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 5.68 Total: -3.92 kcal Atomic # 7 Polarization: -132.50 SS G_CDS: -5.14 Total: -137.63 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.01 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.09 kcal Total: -81.75 1.09 -80.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318712260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.623 kcal (2) G-P(sol) polarization free energy of solvation -81.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds