Wall clock time and date at job start Sat Apr 11 2020 07:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30013 * 127.33877 * 2 1 4 4 O 1.20649 * 112.30505 * 179.97438 * 3 2 1 5 5 C 1.33499 * 113.15915 * 359.71762 * 4 3 2 6 6 C 1.50695 * 126.83014 * 180.31147 * 5 4 3 7 7 F 1.39901 * 109.46959 * 120.16632 * 6 5 4 8 8 F 1.39901 * 109.46865 * 240.16268 * 6 5 4 9 9 C 1.37363 * 106.33357 * 0.44794 * 5 4 3 10 10 C 1.47398 * 128.55754 * 179.85547 * 9 5 4 11 11 O 1.21601 * 120.00406 * 269.67756 * 10 9 5 12 12 N 1.34778 * 120.00119 * 89.68209 * 10 9 5 13 13 C 1.46498 * 120.00405 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47139 * 180.02562 * 13 12 10 15 15 O 1.42898 * 110.88633 * 303.87721 * 14 13 12 16 16 C 1.55152 * 111.00408 * 179.97438 * 14 13 12 17 17 C 1.54318 * 102.94511 * 206.38522 * 16 14 13 18 18 N 1.47022 * 107.27253 * 22.18990 * 17 16 14 19 19 C 1.36933 * 125.65341 * 181.02674 * 18 17 16 20 20 H 1.08006 * 120.00444 * 153.90406 * 19 18 17 21 21 C 1.38817 * 119.99751 * 333.90252 * 19 18 17 22 22 N 1.31616 * 120.00100 * 145.63931 * 21 19 18 23 23 Si 1.86797 * 119.99742 * 325.63468 * 21 19 18 24 24 H 1.48495 * 109.47312 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46991 * 120.00404 * 23 21 19 26 26 H 1.48502 * 109.47132 * 239.99993 * 23 21 19 27 27 C 1.47424 * 108.69946 * 1.29134 * 18 17 16 28 28 H 1.09000 * 109.47315 * 270.04259 * 1 2 3 29 29 H 1.08994 * 109.47068 * 30.04838 * 1 2 3 30 30 H 1.09004 * 109.47232 * 150.04666 * 1 2 3 31 31 H 1.08993 * 109.47632 * 0.16773 * 6 5 4 32 32 H 0.97005 * 119.99678 * 359.97438 * 12 10 9 33 33 H 1.08996 * 109.47372 * 59.99647 * 13 12 10 34 34 H 1.09001 * 109.46705 * 299.99729 * 13 12 10 35 35 H 0.96701 * 113.99994 * 56.12246 * 15 14 13 36 36 H 1.09001 * 110.72609 * 88.01809 * 16 14 13 37 37 H 1.09005 * 110.72274 * 324.74668 * 16 14 13 38 38 H 1.09006 * 109.88476 * 262.77823 * 17 16 14 39 39 H 1.08998 * 109.88900 * 141.61115 * 17 16 14 40 40 H 0.97006 * 120.00091 * 5.05677 * 22 21 19 41 41 H 1.09000 * 110.36988 * 94.48149 * 27 18 17 42 42 H 1.09005 * 110.36594 * 216.80532 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7207 0.0005 5 6 3.6494 -0.6008 0.0070 6 6 4.9712 -1.3246 0.0160 7 9 5.0567 -2.1250 1.1602 8 9 5.0700 -2.1290 -1.1244 9 6 2.3991 -1.1696 0.0007 10 6 2.0401 -2.5992 0.0009 11 8 1.8923 -3.1892 -1.0520 12 7 1.8755 -3.2525 1.1683 13 6 1.5181 -4.6732 1.1686 14 6 1.3928 -5.1673 2.6112 15 8 2.5971 -4.9216 3.3402 16 6 1.0138 -6.6712 2.6531 17 6 0.2895 -6.8076 4.0088 18 7 -0.1919 -5.4698 4.3831 19 6 -0.8696 -5.1577 5.5313 20 1 -0.8202 -4.1561 5.9323 21 6 -1.6203 -6.1287 6.1798 22 7 -1.7054 -6.1266 7.4932 23 14 -2.5097 -7.4384 5.1884 24 1 -2.2556 -7.2217 3.7415 25 1 -2.0117 -8.7808 5.5824 26 1 -3.9685 -7.3543 5.4533 27 6 0.1704 -4.5210 3.3144 28 1 -0.3634 0.0008 1.0276 29 1 -0.3633 0.8895 -0.5146 30 1 -0.3634 -0.8904 -0.5131 31 1 5.7834 -0.5978 0.0195 32 1 1.9937 -2.7819 2.0082 33 1 2.2926 -5.2428 0.6550 34 1 0.5664 -4.8085 0.6547 35 1 2.8735 -3.9950 3.3423 36 1 1.9074 -7.2950 2.6287 37 1 0.3439 -6.9232 1.8309 38 1 0.9832 -7.1766 4.7643 39 1 -0.5539 -7.4912 3.9115 40 1 -1.3052 -5.4055 8.0040 41 1 -0.6562 -4.4055 2.6134 42 1 0.4450 -3.5561 3.7408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325102638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:50 Heat of formation + Delta-G solvation = -84.903777 kcal Electronic energy + Delta-G solvation = -31320.566125 eV Core-core repulsion = 26555.286495 eV Total energy + Delta-G solvation = -4765.279630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.66831 -47.67240 -45.52713 -40.15581 -38.68764 -35.42644 -35.17036 -34.34607 -33.48246 -32.41002 -30.14676 -29.34832 -28.72345 -27.56608 -26.13821 -24.61195 -23.06240 -21.58845 -21.01982 -20.42716 -20.19478 -19.00447 -18.62922 -18.02906 -17.81477 -17.55503 -17.52316 -16.67255 -16.31736 -15.72120 -15.43846 -14.96251 -14.64933 -14.51116 -14.21772 -14.00194 -13.97413 -13.81598 -13.79095 -13.57720 -13.47519 -13.15791 -13.11902 -12.96295 -12.36518 -12.09961 -11.86160 -11.79725 -11.37023 -11.19606 -10.96804 -10.78925 -10.63534 -10.47630 -10.38709 -10.31326 -9.83038 -9.60522 -9.40737 -9.31416 -8.28190 -7.10111 -6.34860 -3.29268 0.41698 1.31487 1.69092 1.98485 2.68666 3.26282 3.38636 3.44142 3.50267 3.54232 3.64558 3.88556 4.05096 4.20931 4.25378 4.40983 4.54680 4.56465 4.59342 4.89284 4.96847 5.06797 5.07094 5.17128 5.18248 5.38214 5.56700 5.58904 5.65372 5.82124 5.95827 6.08169 6.12820 6.31764 6.36017 6.68352 6.85053 7.01053 7.51888 7.68899 7.77722 7.86121 8.33733 8.97249 9.56829 10.29868 11.02326 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.002988 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.449732 B = 9368.018226 C = 9909.448408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.059 3.941 3 N -0.335 5.335 4 O 0.126 5.874 5 C -0.080 4.080 6 C 0.360 3.640 7 F -0.175 7.175 8 F -0.174 7.174 9 C -0.188 4.188 10 C 0.593 3.407 11 O -0.511 6.511 12 N -0.708 5.708 13 C 0.103 3.897 14 C 0.102 3.898 15 O -0.534 6.534 16 C -0.114 4.114 17 C 0.127 3.873 18 N -0.595 5.595 19 C -0.344 4.344 20 H 0.065 0.935 21 C -0.003 4.003 22 N -0.900 5.900 23 Si 1.049 2.951 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.297 1.297 27 C 0.110 3.890 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.402 0.598 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.365 0.635 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.032 0.968 40 H 0.266 0.734 41 H 0.029 0.971 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.285 12.029 -17.178 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 N -0.037 5.037 4 O 0.058 5.942 5 C -0.145 4.145 6 C 0.305 3.695 7 F -0.156 7.156 8 F -0.155 7.155 9 C -0.195 4.195 10 C 0.375 3.625 11 O -0.386 6.386 12 N -0.360 5.360 13 C -0.021 4.021 14 C 0.060 3.940 15 O -0.338 6.338 16 C -0.152 4.152 17 C 0.002 3.998 18 N -0.322 5.322 19 C -0.472 4.472 20 H 0.082 0.918 21 C -0.208 4.208 22 N -0.538 5.538 23 Si 0.880 3.120 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.225 1.225 27 C -0.017 4.017 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.164 0.836 32 H 0.237 0.763 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.211 0.789 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.946 10.863 -17.590 23.393 hybrid contribution 0.791 1.443 0.158 1.653 sum 11.737 12.305 -17.432 24.352 Atomic orbital electron populations 1.20349 0.84158 1.04888 1.04654 1.24898 0.99077 0.85629 1.00636 1.73635 0.88817 1.22897 1.18329 1.84570 1.21827 1.20685 1.67086 1.24989 0.97138 0.85795 1.06592 1.19239 0.92174 0.85432 0.72635 1.93128 1.96647 1.75758 1.50049 1.93144 1.96502 1.75492 1.50334 1.22228 0.92421 0.96157 1.08710 1.16762 0.77723 0.83560 0.84417 1.90875 1.49495 1.67262 1.30982 1.45861 1.70112 1.12004 1.08046 1.22148 1.02222 0.79453 0.98234 1.22722 0.86026 0.97651 0.87584 1.86637 1.41232 1.30540 1.75435 1.22573 1.00521 0.92662 0.99436 1.21592 0.95827 0.89318 0.93015 1.44514 1.65473 1.03090 1.19085 1.19727 1.27564 1.00235 0.99625 0.91768 1.26062 0.96835 1.01346 0.96514 1.70919 1.47749 1.30243 1.04896 0.84033 0.76554 0.75769 0.75646 1.20576 1.21825 1.22528 1.22289 0.93388 0.94366 0.91623 0.88803 0.89369 0.89217 0.83597 0.76271 0.90092 0.89730 0.78855 0.90119 0.90059 0.94177 0.95097 0.92343 0.95331 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.49 36.00 0.38 -0.28 16 2 C 0.06 0.60 7.59 -79.77 -0.61 -0.01 16 3 N -0.33 -3.50 12.01 34.78 0.42 -3.08 16 4 O 0.13 1.14 11.06 18.64 0.21 1.34 16 5 C -0.08 -0.72 6.98 -34.63 -0.24 -0.96 16 6 C 0.36 2.52 5.68 36.00 0.20 2.72 16 7 F -0.17 -1.49 17.32 2.25 0.04 -1.46 16 8 F -0.17 -1.69 17.32 2.25 0.04 -1.65 16 9 C -0.19 -2.04 6.24 -102.89 -0.64 -2.68 16 10 C 0.59 7.46 7.63 -12.53 -0.10 7.37 16 11 O -0.51 -8.14 17.11 5.28 0.09 -8.05 16 12 N -0.71 -8.04 5.20 -61.39 -0.32 -8.36 16 13 C 0.10 1.31 4.88 -4.04 -0.02 1.29 16 14 C 0.10 1.57 0.97 -88.35 -0.09 1.49 16 15 O -0.53 -8.38 13.21 -35.23 -0.47 -8.85 16 16 C -0.11 -1.86 6.15 -24.90 -0.15 -2.02 16 17 C 0.13 2.75 6.04 -3.07 -0.02 2.74 16 18 N -0.59 -14.27 3.05 -169.93 -0.52 -14.79 16 19 C -0.34 -9.70 10.24 -15.06 -0.15 -9.85 16 20 H 0.06 1.92 8.06 -52.48 -0.42 1.50 16 21 C 0.00 -0.10 5.29 -17.43 -0.09 -0.19 16 22 N -0.90 -27.62 13.70 55.49 0.76 -26.86 16 23 Si 1.05 25.88 26.22 -169.99 -4.46 21.42 16 24 H -0.28 -6.43 6.18 56.52 0.35 -6.08 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 27 C 0.11 2.06 6.22 -2.41 -0.02 2.04 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.15 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.40 3.95 7.26 -40.82 -0.30 3.66 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 35 H 0.37 4.40 7.69 45.56 0.35 4.75 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.03 0.70 3.85 -51.93 -0.20 0.50 16 40 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 41 H 0.03 0.54 7.99 -51.93 -0.41 0.12 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -35.66 365.84 -4.64 -40.31 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.41 Total: 2.85 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.54 Total: 1.66 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.34 Total: -53.09 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.17 Total: -15.56 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -4.46 Total: 21.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.66 -4.64 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325102638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.597 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds