Wall clock time and date at job start Sat Apr 11 2020 07:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30013 * 127.33877 * 2 1 4 4 O 1.20649 * 112.30505 * 179.97438 * 3 2 1 5 5 C 1.33499 * 113.15915 * 359.71762 * 4 3 2 6 6 C 1.50695 * 126.83014 * 180.31147 * 5 4 3 7 7 F 1.39901 * 109.46959 * 120.16632 * 6 5 4 8 8 F 1.39901 * 109.46865 * 240.16268 * 6 5 4 9 9 C 1.37363 * 106.33357 * 0.44794 * 5 4 3 10 10 C 1.47398 * 128.55754 * 179.85547 * 9 5 4 11 11 O 1.21601 * 120.00406 * 269.67756 * 10 9 5 12 12 N 1.34778 * 120.00119 * 89.68209 * 10 9 5 13 13 C 1.46498 * 120.00405 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47139 * 180.02562 * 13 12 10 15 15 O 1.42898 * 110.88633 * 303.87721 * 14 13 12 16 16 C 1.55152 * 111.00408 * 179.97438 * 14 13 12 17 17 C 1.54318 * 102.94511 * 206.38522 * 16 14 13 18 18 N 1.47022 * 107.27253 * 22.18990 * 17 16 14 19 19 C 1.36933 * 125.65341 * 181.02674 * 18 17 16 20 20 H 1.08006 * 120.00444 * 153.90406 * 19 18 17 21 21 C 1.38817 * 119.99751 * 333.90252 * 19 18 17 22 22 N 1.31616 * 120.00100 * 145.63931 * 21 19 18 23 23 Si 1.86797 * 119.99742 * 325.63468 * 21 19 18 24 24 H 1.48495 * 109.47312 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46991 * 120.00404 * 23 21 19 26 26 H 1.48502 * 109.47132 * 239.99993 * 23 21 19 27 27 C 1.47424 * 108.69946 * 1.29134 * 18 17 16 28 28 H 1.09000 * 109.47315 * 270.04259 * 1 2 3 29 29 H 1.08994 * 109.47068 * 30.04838 * 1 2 3 30 30 H 1.09004 * 109.47232 * 150.04666 * 1 2 3 31 31 H 1.08993 * 109.47632 * 0.16773 * 6 5 4 32 32 H 0.97005 * 119.99678 * 359.97438 * 12 10 9 33 33 H 1.08996 * 109.47372 * 59.99647 * 13 12 10 34 34 H 1.09001 * 109.46705 * 299.99729 * 13 12 10 35 35 H 0.96701 * 113.99994 * 56.12246 * 15 14 13 36 36 H 1.09001 * 110.72609 * 88.01809 * 16 14 13 37 37 H 1.09005 * 110.72274 * 324.74668 * 16 14 13 38 38 H 1.09006 * 109.88476 * 262.77823 * 17 16 14 39 39 H 1.08998 * 109.88900 * 141.61115 * 17 16 14 40 40 H 0.97006 * 120.00091 * 5.05677 * 22 21 19 41 41 H 1.09000 * 110.36988 * 94.48149 * 27 18 17 42 42 H 1.09005 * 110.36594 * 216.80532 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7207 0.0005 5 6 3.6494 -0.6008 0.0070 6 6 4.9712 -1.3246 0.0160 7 9 5.0567 -2.1250 1.1602 8 9 5.0700 -2.1290 -1.1244 9 6 2.3991 -1.1696 0.0007 10 6 2.0401 -2.5992 0.0009 11 8 1.8923 -3.1892 -1.0520 12 7 1.8755 -3.2525 1.1683 13 6 1.5181 -4.6732 1.1686 14 6 1.3928 -5.1673 2.6112 15 8 2.5971 -4.9216 3.3402 16 6 1.0138 -6.6712 2.6531 17 6 0.2895 -6.8076 4.0088 18 7 -0.1919 -5.4698 4.3831 19 6 -0.8696 -5.1577 5.5313 20 1 -0.8202 -4.1561 5.9323 21 6 -1.6203 -6.1287 6.1798 22 7 -1.7054 -6.1266 7.4932 23 14 -2.5097 -7.4384 5.1884 24 1 -2.2556 -7.2217 3.7415 25 1 -2.0117 -8.7808 5.5824 26 1 -3.9685 -7.3543 5.4533 27 6 0.1704 -4.5210 3.3144 28 1 -0.3634 0.0008 1.0276 29 1 -0.3633 0.8895 -0.5146 30 1 -0.3634 -0.8904 -0.5131 31 1 5.7834 -0.5978 0.0195 32 1 1.9937 -2.7819 2.0082 33 1 2.2926 -5.2428 0.6550 34 1 0.5664 -4.8085 0.6547 35 1 2.8735 -3.9950 3.3423 36 1 1.9074 -7.2950 2.6287 37 1 0.3439 -6.9232 1.8309 38 1 0.9832 -7.1766 4.7643 39 1 -0.5539 -7.4912 3.9115 40 1 -1.3052 -5.4055 8.0040 41 1 -0.6562 -4.4055 2.6134 42 1 0.4450 -3.5561 3.7408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325102638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:50 Heat of formation + Delta-G solvation = -113.059817 kcal Electronic energy + Delta-G solvation = -31321.787063 eV Core-core repulsion = 26555.286495 eV Total energy + Delta-G solvation = -4766.500567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.28286 -48.30247 -46.27994 -41.24525 -39.99857 -36.96297 -35.92840 -35.43755 -34.41640 -34.20218 -31.73540 -30.25474 -29.89040 -28.40849 -27.42727 -25.79151 -24.48124 -22.62608 -22.23252 -21.62935 -21.48103 -19.92108 -19.52749 -19.35218 -18.72136 -18.48825 -18.18661 -17.87110 -17.31270 -16.97433 -16.57797 -16.38504 -16.08181 -15.49204 -15.17721 -15.15521 -15.07773 -14.74491 -14.69115 -14.63706 -14.46697 -14.41357 -14.29745 -13.77341 -13.64463 -13.47893 -13.02763 -12.87145 -12.75111 -12.51328 -12.47013 -12.35858 -12.01536 -11.66475 -11.57111 -11.29195 -11.19142 -11.16958 -11.02005 -10.44726 -10.39157 -9.16404 -8.55529 -5.48704 -0.31209 0.55221 0.95972 1.08644 1.44699 1.53473 1.71852 1.77719 2.52850 2.64572 2.79446 2.89348 2.93163 3.07699 3.19605 3.31009 3.39724 3.54079 3.63613 3.68194 3.74894 3.82453 3.92212 4.25633 4.35605 4.38137 4.49068 4.55485 4.57929 4.71445 4.78699 4.83739 4.92465 4.96330 4.98329 5.13414 5.23164 5.71348 6.07713 6.15569 6.65569 6.78452 6.79703 6.82210 7.50468 8.20553 8.76636 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.002988 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.449732 B = 9368.018226 C = 9909.448408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.055 3.945 3 N -0.351 5.351 4 O 0.136 5.864 5 C -0.064 4.064 6 C 0.356 3.644 7 F -0.184 7.184 8 F -0.190 7.190 9 C -0.216 4.216 10 C 0.600 3.400 11 O -0.547 6.547 12 N -0.700 5.700 13 C 0.115 3.885 14 C 0.120 3.880 15 O -0.549 6.549 16 C -0.107 4.107 17 C 0.117 3.883 18 N -0.616 5.616 19 C -0.337 4.337 20 H 0.031 0.969 21 C -0.058 4.058 22 N -0.936 5.936 23 Si 1.093 2.907 24 H -0.251 1.251 25 H -0.286 1.286 26 H -0.296 1.296 27 C 0.105 3.895 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.202 0.798 32 H 0.410 0.590 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.380 0.620 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.015 0.985 39 H 0.029 0.971 40 H 0.251 0.749 41 H 0.041 0.959 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.320 12.161 -19.591 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 N -0.053 5.053 4 O 0.069 5.931 5 C -0.130 4.130 6 C 0.301 3.699 7 F -0.165 7.165 8 F -0.171 7.171 9 C -0.224 4.224 10 C 0.384 3.616 11 O -0.425 6.425 12 N -0.352 5.352 13 C -0.009 4.009 14 C 0.078 3.922 15 O -0.356 6.356 16 C -0.145 4.145 17 C -0.007 4.007 18 N -0.343 5.343 19 C -0.465 4.465 20 H 0.048 0.952 21 C -0.256 4.256 22 N -0.577 5.577 23 Si 0.918 3.082 24 H -0.176 1.176 25 H -0.213 1.213 26 H -0.224 1.224 27 C -0.020 4.020 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.219 0.781 32 H 0.247 0.753 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.229 0.771 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.033 0.967 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.011 11.037 -20.018 25.822 hybrid contribution 0.563 1.537 0.955 1.895 sum 12.574 12.574 -19.063 26.069 Atomic orbital electron populations 1.20446 0.83002 1.05377 1.05323 1.25209 0.99943 0.85281 1.00126 1.73624 0.89268 1.23199 1.19194 1.84560 1.21359 1.20610 1.66585 1.25395 0.97559 0.85632 1.04410 1.19936 0.92648 0.85730 0.71565 1.93107 1.96617 1.76197 1.50548 1.93111 1.96502 1.76144 1.51345 1.22151 0.93605 0.95467 1.11132 1.16855 0.76808 0.84027 0.83890 1.90855 1.51223 1.68238 1.32162 1.45767 1.69515 1.11609 1.08290 1.21952 1.02881 0.80060 0.95960 1.22478 0.84438 0.96776 0.88524 1.86612 1.41048 1.32156 1.75780 1.22612 1.01293 0.93592 0.97033 1.21722 0.95676 0.87960 0.95343 1.44585 1.65068 1.05249 1.19387 1.19606 1.27062 0.98742 1.01112 0.95162 1.27246 0.97604 1.04188 0.96553 1.71044 1.49942 1.30657 1.06055 0.83478 0.75281 0.73626 0.75824 1.17582 1.21264 1.22351 1.22495 0.95272 0.93602 0.90672 0.87970 0.88177 0.89425 0.78125 0.75333 0.89322 0.89176 0.77091 0.88241 0.87238 0.96679 0.95329 0.93940 0.94157 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.49 71.24 0.75 -0.47 16 2 C 0.06 1.05 7.59 45.16 0.34 1.39 16 3 N -0.35 -6.79 12.01 -44.79 -0.54 -7.32 16 4 O 0.14 2.18 11.06 76.94 0.85 3.03 16 5 C -0.06 -1.02 6.98 25.48 0.18 -0.84 16 6 C 0.36 3.99 5.68 71.23 0.40 4.39 16 7 F -0.18 -2.69 17.32 44.97 0.78 -1.91 16 8 F -0.19 -3.31 17.32 44.97 0.78 -2.53 16 9 C -0.22 -4.35 6.24 -18.74 -0.12 -4.47 16 10 C 0.60 14.09 7.63 86.66 0.66 14.75 16 11 O -0.55 -16.64 17.11 -4.04 -0.07 -16.71 16 12 N -0.70 -14.31 5.20 -466.41 -2.42 -16.73 16 13 C 0.12 2.58 4.88 86.38 0.42 3.00 16 14 C 0.12 3.36 0.97 -9.33 -0.01 3.35 16 15 O -0.55 -15.99 13.21 -148.98 -1.97 -17.96 16 16 C -0.11 -3.17 6.15 31.78 0.20 -2.97 16 17 C 0.12 4.91 6.04 86.73 0.52 5.43 16 18 N -0.62 -29.14 3.05 -691.54 -2.11 -31.26 16 19 C -0.34 -19.33 10.24 84.04 0.86 -18.47 16 20 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 21 C -0.06 -3.43 5.29 84.86 0.45 -2.99 16 22 N -0.94 -59.34 13.70 21.65 0.30 -59.05 16 23 Si 1.09 52.11 26.22 68.60 1.80 53.91 16 24 H -0.25 -10.69 6.18 99.48 0.61 -10.08 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 C 0.10 3.75 6.22 86.93 0.54 4.29 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.20 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.41 7.18 7.26 -92.70 -0.67 6.51 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 2.00 8.07 -2.39 -0.02 1.98 16 35 H 0.38 8.32 7.69 -74.06 -0.57 7.75 16 36 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.11 2.66 8.04 -2.38 -0.02 2.64 16 38 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.03 1.22 3.85 -2.39 -0.01 1.21 16 40 H 0.25 16.03 8.73 -92.70 -0.81 15.23 16 41 H 0.04 1.39 7.99 -2.39 -0.02 1.37 16 42 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -79.40 365.84 2.32 -77.07 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -0.27 Total: 13.06 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.20 Total: 6.40 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -4.78 Total: -114.36 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.19 Total: -31.64 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.56 Total: -4.44 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 1.80 Total: 53.91 kcal Total: -79.40 2.32 -77.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325102638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.986 kcal (2) G-P(sol) polarization free energy of solvation -79.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds