Wall clock time and date at job start Sat Apr 11 2020 07:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30010 * 127.33977 * 2 1 4 4 O 1.20657 * 112.30381 * 179.76235 * 3 2 1 5 5 C 1.33490 * 113.15533 * 0.46163 * 4 3 2 6 6 C 1.50706 * 126.83086 * 179.81701 * 5 4 3 7 7 F 1.39900 * 109.46715 * 29.68955 * 6 5 4 8 8 F 1.39897 * 109.47068 * 149.68865 * 6 5 4 9 9 C 1.37359 * 106.34080 * 359.55997 * 5 4 3 10 10 C 1.47403 * 128.56344 * 180.23573 * 9 5 4 11 11 O 1.21612 * 119.99928 * 90.00402 * 10 9 5 12 12 N 1.34778 * 119.99851 * 269.99843 * 10 9 5 13 13 C 1.46499 * 119.99457 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47023 * 180.02562 * 13 12 10 15 15 O 1.42904 * 110.64146 * 66.68577 * 14 13 12 16 16 C 1.55156 * 110.72396 * 190.02514 * 14 13 12 17 17 C 1.54905 * 101.58371 * 153.86144 * 16 14 13 18 18 N 1.47427 * 104.83581 * 322.99167 * 17 16 14 19 19 C 1.36933 * 125.65108 * 204.16598 * 18 17 16 20 20 H 1.07998 * 119.99919 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99913 * 359.95324 * 19 18 17 22 22 N 1.31614 * 119.99933 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99754 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47416 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46774 * 120.00283 * 23 21 19 26 26 H 1.48502 * 109.47200 * 240.00174 * 23 21 19 27 27 C 1.47032 * 108.69997 * 24.12485 * 18 17 16 28 28 H 1.08995 * 109.46947 * 269.95816 * 1 2 3 29 29 H 1.09003 * 109.47095 * 29.95410 * 1 2 3 30 30 H 1.08998 * 109.47127 * 149.95339 * 1 2 3 31 31 H 1.09000 * 109.47161 * 269.69110 * 6 5 4 32 32 H 0.96996 * 120.00444 * 0.02562 * 12 10 9 33 33 H 1.08999 * 109.47545 * 300.00307 * 13 12 10 34 34 H 1.08998 * 109.47545 * 60.00730 * 13 12 10 35 35 H 0.96696 * 113.99924 * 300.70507 * 15 14 13 36 36 H 1.08998 * 111.00699 * 271.94159 * 16 14 13 37 37 H 1.09010 * 111.00052 * 35.78758 * 16 14 13 38 38 H 1.08994 * 110.36793 * 204.15354 * 17 16 14 39 39 H 1.08997 * 110.36673 * 81.82955 * 17 16 14 40 40 H 0.97003 * 119.99898 * 179.97438 * 22 21 19 41 41 H 1.08996 * 109.87930 * 239.52324 * 27 18 17 42 42 H 1.08997 * 109.87876 * 118.35739 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7206 0.0046 5 6 3.6494 -0.6009 -0.0013 6 6 4.9712 -1.3248 -0.0019 7 9 5.9291 -0.5470 0.6573 8 9 4.8317 -2.5507 0.6576 9 6 2.3991 -1.1697 -0.0009 10 6 2.0400 -2.5993 -0.0014 11 8 1.8923 -3.1894 1.0517 12 7 1.8752 -3.2523 -1.1688 13 6 1.5177 -4.6730 -1.1691 14 6 1.3934 -5.1673 -2.6118 15 8 2.6652 -5.1457 -3.2630 16 6 0.7750 -6.5897 -2.6535 17 6 0.1265 -6.6058 -4.0602 18 7 -0.3950 -5.2401 -4.2511 19 6 -1.4188 -4.8866 -5.0888 20 1 -1.7283 -3.8542 -5.1575 21 6 -2.0586 -5.8551 -5.8500 22 7 -1.6815 -7.1133 -5.7662 23 14 -3.4549 -5.3727 -6.9934 24 1 -3.6835 -3.9081 -6.9050 25 1 -3.0992 -5.7344 -8.3890 26 1 -4.6916 -6.0921 -6.5954 27 6 0.3659 -4.3206 -3.3923 28 1 -0.3633 -0.0008 1.0276 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3633 -0.8895 -0.5145 31 1 5.2895 -1.4993 -1.0296 32 1 1.9932 -2.7817 -2.0087 33 1 2.2922 -5.2428 -0.6557 34 1 0.5661 -4.8084 -0.6552 35 1 3.0746 -4.2704 -3.2976 36 1 1.5475 -7.3542 -2.5706 37 1 0.0220 -6.7113 -1.8747 38 1 -0.6869 -7.3306 -4.0946 39 1 0.8735 -6.8362 -4.8197 40 1 -2.1288 -7.7901 -6.2979 41 1 -0.3077 -3.8206 -2.6963 42 1 0.8830 -3.5829 -4.0057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325102639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:54 Heat of formation + Delta-G solvation = -86.900911 kcal Electronic energy + Delta-G solvation = -31096.403866 eV Core-core repulsion = 26331.037633 eV Total energy + Delta-G solvation = -4765.366232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.64527 -47.66878 -45.45017 -40.08612 -38.56679 -35.25798 -35.10008 -34.39048 -33.45486 -32.16296 -29.79187 -29.26117 -28.51343 -27.39276 -26.00212 -24.79003 -23.37399 -21.47965 -20.97795 -20.19955 -20.03602 -18.97677 -18.71719 -17.82042 -17.70834 -17.59865 -17.04830 -16.51007 -16.22439 -15.65634 -15.31703 -14.81693 -14.49113 -14.31265 -14.27551 -13.95640 -13.92232 -13.76847 -13.76135 -13.58050 -13.24948 -13.19050 -13.04824 -12.41638 -12.19760 -12.10204 -11.80641 -11.67932 -11.12544 -10.95403 -10.91511 -10.74383 -10.40578 -10.37627 -10.23058 -10.18532 -9.99819 -9.80034 -9.53482 -9.34752 -8.72997 -6.94379 -5.73947 -3.16736 0.48613 1.37406 1.79889 2.06411 2.76165 3.12924 3.34064 3.39244 3.40744 3.42055 3.60732 3.98473 4.10437 4.17441 4.34703 4.38062 4.52502 4.58455 4.75549 5.02516 5.06621 5.11987 5.23483 5.26565 5.40960 5.52756 5.62841 5.73761 5.84544 6.05757 6.14300 6.28887 6.40422 6.48713 6.51798 7.08077 7.48362 7.53045 7.59187 7.75588 7.79058 7.82372 8.26428 9.12279 9.72740 10.36325 11.29774 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.002853 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.085374 B = 9811.562765 C =10785.490077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.060 3.940 3 N -0.338 5.338 4 O 0.127 5.873 5 C -0.077 4.077 6 C 0.363 3.637 7 F -0.182 7.182 8 F -0.171 7.171 9 C -0.195 4.195 10 C 0.593 3.407 11 O -0.508 6.508 12 N -0.713 5.713 13 C 0.103 3.897 14 C 0.105 3.895 15 O -0.541 6.541 16 C -0.127 4.127 17 C 0.156 3.844 18 N -0.599 5.599 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.919 5.919 23 Si 0.915 3.085 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.116 3.884 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.402 0.598 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.363 0.637 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.019 0.981 40 H 0.253 0.747 41 H 0.030 0.970 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.693 12.032 10.983 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 N -0.040 5.040 4 O 0.060 5.940 5 C -0.142 4.142 6 C 0.308 3.692 7 F -0.163 7.163 8 F -0.152 7.152 9 C -0.202 4.202 10 C 0.376 3.624 11 O -0.383 6.383 12 N -0.365 5.365 13 C -0.020 4.020 14 C 0.063 3.937 15 O -0.345 6.345 16 C -0.166 4.166 17 C 0.031 3.969 18 N -0.325 5.325 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.746 3.254 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.011 4.011 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.168 0.832 32 H 0.237 0.763 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.209 0.791 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 11.101 12.142 11.559 20.107 hybrid contribution -0.520 0.437 -0.815 1.061 sum 10.580 12.579 10.744 19.637 Atomic orbital electron populations 1.20335 0.84168 1.04962 1.04480 1.24899 0.99056 0.85618 1.00581 1.73645 0.88884 1.22989 1.18490 1.84623 1.21684 1.20628 1.67044 1.25148 0.97038 0.85978 1.06053 1.19605 0.79742 0.74983 0.94828 1.93090 1.64482 1.75015 1.83685 1.93164 1.95631 1.42719 1.83678 1.22148 0.91948 0.96212 1.09926 1.16756 0.77732 0.83446 0.84486 1.90875 1.49219 1.67161 1.31039 1.45961 1.70452 1.12160 1.07919 1.22242 1.02289 0.79128 0.98361 1.22582 0.83840 0.99101 0.88136 1.86650 1.33497 1.33929 1.80466 1.23063 0.98963 0.92266 1.02348 1.21952 0.97549 0.88727 0.88674 1.44415 1.37495 1.02732 1.47895 1.19083 1.07140 0.93620 1.15699 0.90483 1.24799 0.99974 0.95493 1.00160 1.69794 1.43289 0.99928 1.43682 0.85995 0.81590 0.77508 0.80342 1.20545 1.21666 1.21629 1.21917 0.92818 0.93148 0.93198 0.89104 0.89306 0.89121 0.83164 0.76341 0.90064 0.89771 0.79072 0.90928 0.90479 0.87359 0.96316 0.93621 0.95184 0.96004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.01 0.38 -0.31 16 2 C 0.06 0.63 7.59 -79.77 -0.61 0.03 16 3 N -0.34 -3.77 12.01 34.78 0.42 -3.35 16 4 O 0.13 1.30 11.06 18.66 0.21 1.50 16 5 C -0.08 -0.72 7.13 -34.63 -0.25 -0.97 16 6 C 0.36 2.63 5.81 36.01 0.21 2.84 16 7 F -0.18 -1.52 17.32 2.25 0.04 -1.48 16 8 F -0.17 -1.76 16.11 2.25 0.04 -1.72 16 9 C -0.20 -2.12 6.19 -102.89 -0.64 -2.76 16 10 C 0.59 7.38 6.59 -12.53 -0.08 7.30 16 11 O -0.51 -8.21 17.11 5.27 0.09 -8.12 16 12 N -0.71 -7.81 5.13 -61.39 -0.31 -8.12 16 13 C 0.10 1.34 4.80 -4.04 -0.02 1.32 16 14 C 0.10 1.63 0.93 -88.78 -0.08 1.55 16 15 O -0.54 -8.11 13.10 -35.23 -0.46 -8.57 16 16 C -0.13 -2.28 6.26 -24.59 -0.15 -2.44 16 17 C 0.16 3.65 5.88 -2.53 -0.01 3.64 16 18 N -0.60 -14.56 3.39 -170.07 -0.58 -15.14 16 19 C -0.23 -6.09 10.27 -15.06 -0.15 -6.24 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.04 10.09 55.49 0.56 -25.48 16 23 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.12 2.15 5.76 -3.06 -0.02 2.13 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.15 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.40 3.61 7.46 -40.82 -0.30 3.30 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.16 8.03 -51.93 -0.42 0.75 16 35 H 0.36 3.81 8.44 45.56 0.38 4.19 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.30 7.96 -51.92 -0.41 0.89 16 38 H 0.11 2.85 5.87 -51.93 -0.30 2.55 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.03 0.55 7.82 -51.93 -0.41 0.14 16 42 H 0.02 0.40 8.07 -51.93 -0.42 -0.02 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -33.96 366.18 -5.42 -39.38 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.39 Total: 3.45 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.52 Total: 5.77 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.09 Total: -52.10 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.17 Total: -15.19 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.96 -5.42 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325102639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.525 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds