Wall clock time and date at job start Sat Apr 11 2020 07:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30010 * 127.33977 * 2 1 4 4 O 1.20657 * 112.30381 * 179.76235 * 3 2 1 5 5 C 1.33490 * 113.15533 * 0.46163 * 4 3 2 6 6 C 1.50706 * 126.83086 * 179.81701 * 5 4 3 7 7 F 1.39900 * 109.46715 * 29.68955 * 6 5 4 8 8 F 1.39897 * 109.47068 * 149.68865 * 6 5 4 9 9 C 1.37359 * 106.34080 * 359.55997 * 5 4 3 10 10 C 1.47403 * 128.56344 * 180.23573 * 9 5 4 11 11 O 1.21612 * 119.99928 * 90.00402 * 10 9 5 12 12 N 1.34778 * 119.99851 * 269.99843 * 10 9 5 13 13 C 1.46499 * 119.99457 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47023 * 180.02562 * 13 12 10 15 15 O 1.42904 * 110.64146 * 66.68577 * 14 13 12 16 16 C 1.55156 * 110.72396 * 190.02514 * 14 13 12 17 17 C 1.54905 * 101.58371 * 153.86144 * 16 14 13 18 18 N 1.47427 * 104.83581 * 322.99167 * 17 16 14 19 19 C 1.36933 * 125.65108 * 204.16598 * 18 17 16 20 20 H 1.07998 * 119.99919 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99913 * 359.95324 * 19 18 17 22 22 N 1.31614 * 119.99933 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99754 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47416 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46774 * 120.00283 * 23 21 19 26 26 H 1.48502 * 109.47200 * 240.00174 * 23 21 19 27 27 C 1.47032 * 108.69997 * 24.12485 * 18 17 16 28 28 H 1.08995 * 109.46947 * 269.95816 * 1 2 3 29 29 H 1.09003 * 109.47095 * 29.95410 * 1 2 3 30 30 H 1.08998 * 109.47127 * 149.95339 * 1 2 3 31 31 H 1.09000 * 109.47161 * 269.69110 * 6 5 4 32 32 H 0.96996 * 120.00444 * 0.02562 * 12 10 9 33 33 H 1.08999 * 109.47545 * 300.00307 * 13 12 10 34 34 H 1.08998 * 109.47545 * 60.00730 * 13 12 10 35 35 H 0.96696 * 113.99924 * 300.70507 * 15 14 13 36 36 H 1.08998 * 111.00699 * 271.94159 * 16 14 13 37 37 H 1.09010 * 111.00052 * 35.78758 * 16 14 13 38 38 H 1.08994 * 110.36793 * 204.15354 * 17 16 14 39 39 H 1.08997 * 110.36673 * 81.82955 * 17 16 14 40 40 H 0.97003 * 119.99898 * 179.97438 * 22 21 19 41 41 H 1.08996 * 109.87930 * 239.52324 * 27 18 17 42 42 H 1.08997 * 109.87876 * 118.35739 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7206 0.0046 5 6 3.6494 -0.6009 -0.0013 6 6 4.9712 -1.3248 -0.0019 7 9 5.9291 -0.5470 0.6573 8 9 4.8317 -2.5507 0.6576 9 6 2.3991 -1.1697 -0.0009 10 6 2.0400 -2.5993 -0.0014 11 8 1.8923 -3.1894 1.0517 12 7 1.8752 -3.2523 -1.1688 13 6 1.5177 -4.6730 -1.1691 14 6 1.3934 -5.1673 -2.6118 15 8 2.6652 -5.1457 -3.2630 16 6 0.7750 -6.5897 -2.6535 17 6 0.1265 -6.6058 -4.0602 18 7 -0.3950 -5.2401 -4.2511 19 6 -1.4188 -4.8866 -5.0888 20 1 -1.7283 -3.8542 -5.1575 21 6 -2.0586 -5.8551 -5.8500 22 7 -1.6815 -7.1133 -5.7662 23 14 -3.4549 -5.3727 -6.9934 24 1 -3.6835 -3.9081 -6.9050 25 1 -3.0992 -5.7344 -8.3890 26 1 -4.6916 -6.0921 -6.5954 27 6 0.3659 -4.3206 -3.3923 28 1 -0.3633 -0.0008 1.0276 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3633 -0.8895 -0.5145 31 1 5.2895 -1.4993 -1.0296 32 1 1.9932 -2.7817 -2.0087 33 1 2.2922 -5.2428 -0.6557 34 1 0.5661 -4.8084 -0.6552 35 1 3.0746 -4.2704 -3.2976 36 1 1.5475 -7.3542 -2.5706 37 1 0.0220 -6.7113 -1.8747 38 1 -0.6869 -7.3306 -4.0946 39 1 0.8735 -6.8362 -4.8197 40 1 -2.1288 -7.7901 -6.2979 41 1 -0.3077 -3.8206 -2.6963 42 1 0.8830 -3.5829 -4.0057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325102639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:53 Heat of formation + Delta-G solvation = -112.709832 kcal Electronic energy + Delta-G solvation = -31097.523024 eV Core-core repulsion = 26331.037633 eV Total energy + Delta-G solvation = -4766.485391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.28053 -48.31671 -46.23851 -41.18323 -39.88334 -36.82223 -35.89621 -35.45746 -34.24558 -33.94032 -31.40687 -30.10734 -29.76121 -28.23588 -27.46363 -26.03043 -24.68826 -22.55413 -22.00841 -21.53401 -21.34632 -19.86092 -19.44494 -18.89726 -18.61332 -18.36186 -18.26651 -17.71224 -17.23156 -16.74318 -16.64644 -16.35176 -15.67767 -15.58553 -15.21045 -15.11217 -14.84909 -14.63517 -14.60594 -14.45625 -14.41005 -14.19589 -13.89531 -13.83926 -13.64988 -13.28250 -12.91958 -12.79554 -12.73177 -12.58564 -12.36236 -12.06399 -11.98188 -11.92096 -11.67583 -11.38481 -11.17356 -11.05031 -10.90985 -10.74115 -10.36479 -8.89419 -7.77097 -5.21726 -0.26979 0.58462 1.03008 1.18015 1.48384 1.48611 1.58688 1.83745 2.47113 2.49273 2.84165 2.89005 3.17019 3.25418 3.32758 3.39227 3.44070 3.64173 3.71611 3.80164 3.88231 3.91258 3.96404 4.29125 4.48378 4.50597 4.60172 4.62754 4.67134 4.80068 4.94428 4.99486 5.01567 5.06145 5.15761 5.47994 5.63337 5.81381 6.17593 6.30618 6.80685 6.83019 6.87124 7.10403 7.77821 8.40855 9.24963 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.002853 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.085374 B = 9811.562765 C =10785.490077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.058 3.942 3 N -0.355 5.355 4 O 0.125 5.875 5 C -0.061 4.061 6 C 0.360 3.640 7 F -0.188 7.188 8 F -0.189 7.189 9 C -0.215 4.215 10 C 0.603 3.397 11 O -0.548 6.548 12 N -0.699 5.699 13 C 0.118 3.882 14 C 0.126 3.874 15 O -0.553 6.553 16 C -0.120 4.120 17 C 0.159 3.841 18 N -0.623 5.623 19 C -0.237 4.237 20 H 0.084 0.916 21 C -0.067 4.067 22 N -0.948 5.948 23 Si 0.978 3.022 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.292 1.292 27 C 0.111 3.889 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.206 0.794 32 H 0.414 0.586 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.386 0.614 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.074 0.926 39 H -0.016 1.016 40 H 0.246 0.754 41 H 0.041 0.959 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.557 13.658 11.328 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 N -0.059 5.059 4 O 0.060 5.940 5 C -0.127 4.127 6 C 0.306 3.694 7 F -0.169 7.169 8 F -0.170 7.170 9 C -0.222 4.222 10 C 0.387 3.613 11 O -0.425 6.425 12 N -0.351 5.351 13 C -0.006 4.006 14 C 0.085 3.915 15 O -0.360 6.360 16 C -0.159 4.159 17 C 0.034 3.966 18 N -0.349 5.349 19 C -0.366 4.366 20 H 0.102 0.898 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.807 3.193 24 H -0.189 1.189 25 H -0.222 1.222 26 H -0.219 1.219 27 C -0.014 4.014 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.222 0.778 32 H 0.251 0.749 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.235 0.765 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.002 0.998 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.001 13.830 11.901 21.839 hybrid contribution -0.724 -0.013 -0.922 1.172 sum 11.277 13.817 10.979 20.944 Atomic orbital electron populations 1.20445 0.82991 1.05602 1.05086 1.25234 0.99912 0.85338 0.99843 1.73648 0.89231 1.23435 1.19545 1.84610 1.21440 1.20999 1.66949 1.25567 0.97635 0.85559 1.03900 1.20306 0.78531 0.73726 0.96841 1.93078 1.64513 1.75207 1.84126 1.93131 1.95654 1.43837 1.84353 1.21986 0.92774 0.95410 1.12079 1.16801 0.76749 0.83786 0.83946 1.90861 1.51083 1.68158 1.32434 1.45765 1.69693 1.11373 1.08291 1.21949 1.02443 0.80172 0.96055 1.22193 0.83423 0.96769 0.89155 1.86617 1.32859 1.36013 1.80498 1.22907 0.99505 0.94589 0.98882 1.21654 0.95734 0.88109 0.91110 1.44699 1.37724 1.04142 1.48321 1.19479 1.07538 0.93901 1.15666 0.89815 1.25619 1.02576 0.95609 1.02137 1.70051 1.44456 1.00751 1.44547 0.85011 0.78541 0.77869 0.77900 1.18911 1.22226 1.21925 1.22152 0.93309 0.92987 0.92964 0.88485 0.88089 0.89025 0.77794 0.74891 0.89369 0.90235 0.76524 0.89511 0.89364 0.90816 0.99780 0.94368 0.94156 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.49 71.24 0.75 -0.52 16 2 C 0.06 1.13 7.59 45.16 0.34 1.47 16 3 N -0.35 -7.37 12.01 -44.79 -0.54 -7.90 16 4 O 0.12 2.32 11.06 77.01 0.85 3.17 16 5 C -0.06 -1.01 7.13 25.48 0.18 -0.82 16 6 C 0.36 4.18 5.81 71.24 0.41 4.59 16 7 F -0.19 -2.73 17.32 44.97 0.78 -1.95 16 8 F -0.19 -3.46 16.11 44.97 0.72 -2.74 16 9 C -0.22 -4.25 6.19 -18.74 -0.12 -4.36 16 10 C 0.60 13.76 6.59 86.66 0.57 14.33 16 11 O -0.55 -16.94 17.11 -4.07 -0.07 -17.01 16 12 N -0.70 -13.35 5.13 -466.39 -2.39 -15.75 16 13 C 0.12 2.74 4.80 86.38 0.41 3.16 16 14 C 0.13 3.64 0.93 -9.60 -0.01 3.63 16 15 O -0.55 -15.04 13.10 -148.98 -1.95 -16.99 16 16 C -0.12 -4.18 6.26 31.98 0.20 -3.98 16 17 C 0.16 7.61 5.88 86.85 0.51 8.13 16 18 N -0.62 -30.18 3.39 -691.99 -2.35 -32.53 16 19 C -0.24 -12.67 10.27 84.03 0.86 -11.81 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.07 -3.68 5.49 84.86 0.47 -3.21 16 22 N -0.95 -55.42 10.09 21.65 0.22 -55.20 16 23 Si 0.98 44.32 29.55 68.60 2.03 46.35 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 27 C 0.11 3.91 5.76 86.73 0.50 4.41 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.21 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.41 6.03 7.46 -92.71 -0.69 5.34 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 2.01 8.03 -2.39 -0.02 1.99 16 35 H 0.39 6.66 8.44 -74.06 -0.62 6.03 16 36 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.09 2.87 7.96 -2.38 -0.02 2.85 16 38 H 0.07 4.05 5.87 -2.39 -0.01 4.03 16 39 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 40 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.04 1.36 7.82 -2.39 -0.02 1.34 16 42 H 0.04 1.17 8.07 -2.39 -0.02 1.15 16 Total: -1.00 -75.36 366.18 2.17 -73.19 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.22 Total: 12.33 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 5.09 Total: 15.03 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -5.06 Total: -111.38 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.17 Total: -30.83 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 1.50 Total: -4.69 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -75.36 2.17 -73.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325102639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.517 kcal (2) G-P(sol) polarization free energy of solvation -75.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds