Wall clock time and date at job start Sat Apr 11 2020 07:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28063 * 124.24012 * 2 1 4 4 C 1.34410 * 117.91239 * 179.97438 * 3 2 1 5 5 C 1.41251 * 129.47970 * 180.02562 * 4 3 2 6 6 C 1.35754 * 120.63408 * 180.02562 * 5 4 3 7 7 C 1.40193 * 120.61704 * 359.97438 * 6 5 4 8 8 C 1.47583 * 120.12790 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00377 * 179.97438 * 8 7 6 10 10 N 1.34778 * 120.00048 * 0.02562 * 8 7 6 11 11 C 1.46495 * 120.00286 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47612 * 174.80724 * 11 10 8 13 13 N 1.46499 * 112.84441 * 311.21926 * 12 11 10 14 14 C 1.36943 * 120.00010 * 293.74909 * 13 12 11 15 15 H 1.08000 * 119.99724 * 354.49570 * 14 13 12 16 16 C 1.38809 * 119.99861 * 174.49592 * 14 13 12 17 17 N 1.31617 * 120.00544 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99485 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47453 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47171 * 120.00311 * 18 16 14 21 21 H 1.48510 * 109.46660 * 239.99647 * 18 16 14 22 22 C 1.53786 * 113.69075 * 82.48122 * 12 11 10 23 23 C 1.53782 * 87.07936 * 139.99859 * 22 12 11 24 24 C 1.53782 * 113.61857 * 180.02562 * 12 11 10 25 25 C 1.39182 * 119.74687 * 0.23686 * 7 6 5 26 26 C 1.38920 * 119.84559 * 359.50884 * 25 7 6 27 27 S 1.70646 * 124.24084 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47787 * 90.02159 * 1 2 3 29 29 H 1.09007 * 109.46742 * 210.02060 * 1 2 3 30 30 H 1.09007 * 109.47092 * 330.01727 * 1 2 3 31 31 H 1.07999 * 119.68021 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.68932 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99988 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.47187 * 54.80412 * 11 10 8 35 35 H 1.09011 * 109.47235 * 294.80521 * 11 10 8 36 36 H 0.97000 * 120.00560 * 113.48668 * 13 12 11 37 37 H 0.97001 * 120.00287 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.61170 * 254.54906 * 22 12 11 39 39 H 1.08992 * 113.61190 * 25.44765 * 22 12 11 40 40 H 1.09000 * 113.61120 * 220.01889 * 23 22 12 41 41 H 1.08997 * 113.61379 * 89.11665 * 23 22 12 42 42 H 1.08990 * 113.61230 * 334.48641 * 24 12 11 43 43 H 1.09003 * 113.61176 * 105.38402 * 24 12 11 44 44 H 1.07999 * 120.08023 * 179.72618 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5762 1.8952 0.0011 6 6 5.8864 1.5398 0.0011 7 6 6.2598 0.1885 0.0010 8 6 7.6874 -0.1856 0.0004 9 8 8.0086 -1.3583 0.0007 10 7 8.6351 0.7727 0.0004 11 6 10.0523 0.4014 -0.0007 12 6 10.9097 1.6618 -0.1309 13 7 10.4681 2.5405 -1.2168 14 6 10.5696 2.1254 -2.5178 15 1 11.0559 1.1893 -2.7495 16 6 10.0475 2.9077 -3.5387 17 7 9.4544 4.0482 -3.2563 18 14 10.1854 2.3411 -5.3133 19 1 10.8902 1.0349 -5.3626 20 1 8.8261 2.1928 -5.8927 21 1 10.9500 3.3455 -6.0956 22 6 11.1364 2.3953 1.2016 23 6 12.5821 2.6331 0.7343 24 6 12.4215 1.3800 -0.1428 25 6 5.2789 -0.7989 -0.0041 26 6 3.9368 -0.4402 0.0013 27 16 2.4672 -1.4107 0.0006 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3634 0.8902 0.5136 31 1 4.3056 2.9407 0.0017 32 1 6.6483 2.3053 0.0012 33 1 8.3789 1.7082 0.0013 34 1 10.2531 -0.2631 -0.8411 35 1 10.2951 -0.1085 0.9317 36 1 10.1001 3.4148 -1.0140 37 1 9.0898 4.5951 -3.9697 38 1 10.5533 3.3109 1.3006 39 1 11.0607 1.7476 2.0749 40 1 13.3214 2.5193 1.5271 41 1 12.7107 3.5524 0.1630 42 1 12.6971 0.4547 0.3629 43 1 12.8758 1.4761 -1.1290 44 1 5.5604 -1.8415 -0.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326911308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:03 Heat of formation + Delta-G solvation = 34.121100 kcal Electronic energy + Delta-G solvation = -27182.703010 eV Core-core repulsion = 23419.567087 eV Total energy + Delta-G solvation = -3763.135923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.76817 -40.83242 -39.89040 -37.85149 -35.49864 -35.15101 -32.78747 -32.33390 -31.85669 -30.02349 -28.30334 -26.68875 -25.75557 -25.37010 -24.31685 -22.91020 -22.43141 -21.33077 -20.02016 -19.57895 -19.08928 -18.64754 -17.44396 -17.03490 -16.71073 -16.40075 -16.24352 -16.10671 -15.95571 -15.61512 -15.19263 -15.08066 -14.96002 -14.39029 -14.32369 -14.21449 -14.04902 -13.73080 -13.55912 -13.11476 -13.04559 -12.98447 -12.94728 -12.51710 -12.43958 -12.14849 -12.02946 -11.92914 -11.63074 -11.46944 -11.33427 -11.17302 -10.89939 -10.78158 -10.74119 -10.06614 -9.71440 -9.25445 -8.98075 -7.93178 -5.19099 -1.00272 -0.02636 0.08159 0.55292 0.84154 1.42209 1.46174 1.52127 1.87156 2.21342 2.54654 2.64333 2.77431 3.39023 3.42419 3.62337 3.77088 3.81471 3.84271 3.96916 3.99679 4.02593 4.10050 4.23004 4.27529 4.56123 4.63822 4.64999 4.68534 4.83626 4.85295 4.90730 4.94283 4.98282 5.01077 5.07643 5.13217 5.16035 5.32308 5.39491 5.44047 5.49716 5.65998 5.72653 6.31079 6.46216 6.56346 7.17127 7.38406 8.10372 8.35165 9.28807 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.002963 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.994242 B = 9447.895538 C =10567.761157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.099 3.901 3 N -0.502 5.502 4 C 0.096 3.904 5 C -0.076 4.076 6 C -0.066 4.066 7 C -0.129 4.129 8 C 0.553 3.447 9 O -0.584 6.584 10 N -0.687 5.687 11 C 0.126 3.874 12 C 0.157 3.843 13 N -0.703 5.703 14 C -0.215 4.215 15 H 0.063 0.937 16 C -0.060 4.060 17 N -0.956 5.956 18 Si 0.948 3.052 19 H -0.276 1.276 20 H -0.300 1.300 21 H -0.294 1.294 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.149 4.149 25 C -0.010 4.010 26 C -0.221 4.221 27 S 0.147 5.853 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.408 0.592 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.379 0.621 37 H 0.248 0.752 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.895 -7.180 12.399 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.184 4.184 3 N -0.218 5.218 4 C -0.026 4.026 5 C -0.097 4.097 6 C -0.088 4.088 7 C -0.136 4.136 8 C 0.341 3.659 9 O -0.467 6.467 10 N -0.336 5.336 11 C 0.000 4.000 12 C 0.066 3.934 13 N -0.342 5.342 14 C -0.348 4.348 15 H 0.081 0.919 16 C -0.253 4.253 17 N -0.607 5.607 18 Si 0.779 3.221 19 H -0.201 1.201 20 H -0.228 1.228 21 H -0.221 1.221 22 C -0.166 4.166 23 C -0.158 4.158 24 C -0.189 4.189 25 C -0.033 4.033 26 C -0.339 4.339 27 S 0.404 5.596 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.174 0.826 32 H 0.167 0.833 33 H 0.245 0.755 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.213 0.787 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.065 0.935 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.169 -8.635 12.241 20.619 hybrid contribution 0.737 1.310 -1.595 2.192 sum -13.432 -7.325 10.646 18.639 Atomic orbital electron populations 1.20855 0.81461 1.06223 1.05906 1.27705 1.03692 0.90420 0.96608 1.66242 1.03800 1.32519 1.19197 1.19581 0.89852 0.92055 1.01098 1.20475 0.89867 0.99583 0.99784 1.20974 0.96761 0.94915 0.96158 1.19850 0.92537 0.94548 1.06652 1.18284 0.85948 0.85296 0.76372 1.90708 1.83547 1.19327 1.53097 1.45630 1.06280 1.09813 1.71854 1.21802 0.79807 0.98151 1.00236 1.21153 0.92582 0.89928 0.89747 1.42082 1.74540 1.16979 1.00649 1.19238 1.28243 1.02937 0.84339 0.91949 1.25191 1.01946 0.97813 1.00372 1.69736 1.45192 1.14103 1.31623 0.85451 0.76516 0.77430 0.82665 1.20091 1.22800 1.22145 1.23170 0.97053 1.00554 0.95799 1.22556 0.96987 0.97358 0.98924 1.23322 0.96720 0.98955 0.99931 1.20404 0.88602 1.00204 0.94116 1.23930 0.99524 0.97680 1.12801 1.83729 0.93272 1.09303 1.73295 0.87342 0.87012 0.88219 0.82588 0.83252 0.75518 0.94538 0.90464 0.78731 0.94239 0.91485 0.87607 0.89689 0.92057 0.88744 0.93452 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.44 71.24 0.74 -0.04 16 2 C 0.10 1.91 7.29 88.66 0.65 2.56 16 3 N -0.50 -13.07 10.56 -182.20 -1.92 -14.99 16 4 C 0.10 2.73 7.00 39.95 0.28 3.01 16 5 C -0.08 -2.10 10.03 22.43 0.23 -1.87 16 6 C -0.07 -1.92 9.44 22.17 0.21 -1.71 16 7 C -0.13 -4.17 5.87 -20.11 -0.12 -4.29 16 8 C 0.55 20.37 7.76 86.71 0.67 21.05 16 9 O -0.58 -24.63 16.33 -3.99 -0.07 -24.70 16 10 N -0.69 -24.06 5.33 -466.22 -2.49 -26.54 16 11 C 0.13 4.44 5.03 86.38 0.43 4.88 16 12 C 0.16 5.43 0.90 4.13 0.00 5.43 16 13 N -0.70 -30.92 4.58 -300.95 -1.38 -32.30 16 14 C -0.22 -11.11 9.25 84.03 0.78 -10.33 16 15 H 0.06 3.29 7.83 -2.91 -0.02 3.26 16 16 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 17 N -0.96 -54.51 13.06 21.65 0.28 -54.23 16 18 Si 0.95 45.91 29.55 68.60 2.03 47.93 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 21 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 22 C -0.13 -3.46 7.37 31.12 0.23 -3.23 16 23 C -0.12 -3.35 7.99 31.13 0.25 -3.11 16 24 C -0.15 -4.74 7.28 31.13 0.23 -4.51 16 25 C -0.01 -0.31 9.62 22.66 0.22 -0.09 16 26 C -0.22 -6.09 6.54 22.90 0.15 -5.94 16 27 S 0.15 2.91 23.11 -56.49 -1.31 1.60 16 28 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.15 4.01 6.38 -2.91 -0.02 3.99 16 33 H 0.41 13.67 6.14 -92.71 -0.57 13.10 16 34 H 0.04 1.50 8.13 -2.39 -0.02 1.48 16 35 H 0.08 2.39 7.95 -2.38 -0.02 2.37 16 36 H 0.38 17.78 7.87 -92.71 -0.73 17.05 16 37 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 39 H 0.11 2.33 7.97 -2.39 -0.02 2.31 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 42 H 0.09 2.52 8.10 -2.39 -0.02 2.50 16 43 H 0.05 1.76 7.83 -2.39 -0.02 1.74 16 44 H 0.14 4.19 7.64 -2.91 -0.02 4.17 16 Total: -1.00 -67.98 382.18 0.32 -67.66 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: -0.25 Total: 36.57 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.41 Total: -1.00 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -5.51 Total: -128.06 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.07 Total: -24.70 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.31 Total: 1.60 kcal Total: -67.98 0.32 -67.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326911308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.782 kcal (2) G-P(sol) polarization free energy of solvation -67.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds