Wall clock time and date at job start Sat Apr 11 2020 07:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39759 * 125.83763 * 2 1 4 4 C 1.36111 * 107.82620 * 179.83408 * 3 2 1 5 5 N 1.39471 * 126.21651 * 180.12549 * 4 3 2 6 6 C 1.34781 * 119.99689 * 0.36045 * 5 4 3 7 7 O 1.21284 * 120.00417 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99502 * 180.02562 * 6 5 4 9 9 N 1.46499 * 109.46975 * 179.97438 * 8 6 5 10 10 C 1.36931 * 120.00105 * 84.99615 * 9 8 6 11 11 H 1.07998 * 120.00336 * 214.26983 * 10 9 8 12 12 C 1.38818 * 119.99890 * 34.27259 * 10 9 8 13 13 N 1.31615 * 119.99639 * 23.21211 * 12 10 9 14 14 Si 1.86796 * 119.99882 * 203.20461 * 12 10 9 15 15 H 1.48495 * 109.47457 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46923 * 120.00190 * 14 12 10 17 17 H 1.48501 * 109.47237 * 239.99924 * 14 12 10 18 18 S 1.65610 * 119.99969 * 265.00150 * 9 8 6 19 19 O 1.42099 * 106.39912 * 200.29084 * 18 9 8 20 20 O 1.42103 * 106.39823 * 333.20963 * 18 9 8 21 21 N 1.65595 * 107.21526 * 86.74742 * 18 9 8 22 22 C 1.46501 * 120.00067 * 90.00487 * 21 18 9 23 23 C 1.46499 * 119.99919 * 269.99431 * 21 18 9 24 24 N 1.35258 * 107.56499 * 0.42638 * 4 3 2 25 25 C 1.46500 * 126.04429 * 179.76529 * 24 4 3 26 26 N 1.30851 * 125.83428 * 180.31528 * 2 1 3 27 27 H 1.09003 * 109.47253 * 269.71506 * 1 2 3 28 28 H 1.09004 * 109.47064 * 149.71064 * 1 2 3 29 29 H 1.09008 * 109.47159 * 29.71202 * 1 2 3 30 30 H 1.07996 * 126.08559 * 0.02562 * 3 2 1 31 31 H 0.96995 * 119.99747 * 180.36025 * 5 4 3 32 32 H 1.08994 * 109.47039 * 299.99573 * 8 6 5 33 33 H 1.09004 * 109.47351 * 59.99966 * 8 6 5 34 34 H 0.97003 * 120.00105 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.47333 * 89.99071 * 22 21 18 36 36 H 1.08997 * 109.47162 * 209.99341 * 22 21 18 37 37 H 1.08998 * 109.47030 * 329.99416 * 22 21 18 38 38 H 1.08999 * 109.47018 * 60.01161 * 23 21 18 39 39 H 1.09010 * 109.47063 * 180.02562 * 23 21 18 40 40 H 1.09000 * 109.47933 * 300.00494 * 23 21 18 41 41 H 1.08999 * 109.47190 * 269.98380 * 25 24 4 42 42 H 1.08999 * 109.47417 * 29.98649 * 25 24 4 43 43 H 1.09003 * 109.47218 * 149.98757 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0038 5 7 4.7513 1.5274 0.0075 6 6 4.6156 2.8684 0.0149 7 8 3.5096 3.3661 0.0179 8 6 5.8384 3.7493 0.0184 9 7 5.4272 5.1554 0.0259 10 6 5.1367 5.7775 1.2106 11 1 4.3627 6.5297 1.2501 12 6 5.8372 5.4414 2.3610 13 7 7.0349 4.9037 2.2687 14 14 5.0798 5.7524 4.0400 15 1 3.7354 6.3602 3.8718 16 1 4.9530 4.4664 4.7717 17 1 5.9487 6.6772 4.8114 18 16 5.3135 5.9925 -1.3986 19 8 5.3743 7.3711 -1.0597 20 8 6.2197 5.3732 -2.3012 21 7 3.7953 5.7260 -2.0038 22 6 2.6946 6.6223 -1.6414 23 6 3.5530 4.5942 -2.9018 24 7 3.6092 -0.6404 -0.0036 25 6 4.7870 -1.5116 -0.0076 26 7 2.2731 -1.0608 -0.0058 27 1 -0.3634 -0.0051 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3634 0.8926 -0.5094 30 1 1.9902 2.1597 0.0004 31 1 5.6358 1.1294 0.0047 32 1 6.4344 3.5400 0.9066 33 1 6.4326 3.5497 -0.8734 34 1 7.5243 4.6685 3.0725 35 1 2.6398 7.4397 -2.3604 36 1 1.7564 6.0675 -1.6498 37 1 2.8686 7.0267 -0.6443 38 1 3.7987 3.6644 -2.3888 39 1 2.5031 4.5812 -3.1949 40 1 4.1766 4.6949 -3.7900 41 1 5.0795 -1.7223 -1.0363 42 1 5.6082 -1.0149 0.5091 43 1 4.5496 -2.4459 0.5012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329944395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:07 Heat of formation + Delta-G solvation = -1.425442 kcal Electronic energy + Delta-G solvation = -30253.982832 eV Core-core repulsion = 26078.456233 eV Total energy + Delta-G solvation = -4175.526600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.29012 -39.11287 -36.29397 -35.52333 -35.45419 -34.82948 -34.67740 -33.36355 -31.48744 -29.79635 -29.00538 -27.62070 -27.01236 -25.40575 -24.27891 -23.89561 -21.67227 -20.12498 -19.55625 -18.63156 -17.75290 -17.41283 -16.73185 -16.55931 -16.14048 -15.75023 -15.28966 -15.01846 -14.64145 -14.44244 -13.99824 -13.93692 -13.71133 -13.49224 -13.37971 -13.20476 -13.01263 -12.58809 -12.33722 -12.30411 -12.18661 -12.15580 -11.82602 -11.65283 -11.53412 -11.26134 -11.02346 -10.98424 -10.83782 -10.81648 -10.70141 -10.46783 -10.38119 -10.26748 -9.54408 -9.15191 -8.65496 -8.46627 -7.89493 -7.81972 -6.37777 -4.05497 1.57128 1.94715 2.31741 2.90306 3.15811 3.26366 3.29744 3.33357 3.38156 3.89160 4.22687 4.50241 4.51594 4.88204 5.01654 5.05005 5.14359 5.27431 5.28925 5.33787 5.41614 5.67600 5.78290 5.79768 5.84637 5.88128 5.92137 5.98470 6.04727 6.09411 6.21228 6.21931 6.32361 6.43905 6.63637 6.97065 6.99554 7.18716 7.23304 7.50859 7.60782 7.97729 8.28507 8.56823 8.87297 9.27478 10.66739 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010253 B = 0.004945 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.262013 B = 5660.914238 C = 6729.675118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.082 3.918 3 C -0.285 4.285 4 C 0.321 3.679 5 N -0.660 5.660 6 C 0.496 3.504 7 O -0.483 6.483 8 C 0.099 3.901 9 N -0.832 5.832 10 C -0.285 4.285 11 H 0.093 0.907 12 C 0.037 3.963 13 N -0.871 5.871 14 Si 0.913 3.087 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.282 1.282 18 S 2.762 3.238 19 O -0.979 6.979 20 O -1.012 7.012 21 N -1.009 6.009 22 C 0.108 3.892 23 C 0.105 3.895 24 N -0.398 5.398 25 C 0.102 3.898 26 N -0.306 5.306 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.174 0.826 31 H 0.407 0.593 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.267 0.733 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -9.954 -4.868 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.084 4.084 3 C -0.317 4.317 4 C 0.101 3.899 5 N -0.310 5.310 6 C 0.282 3.718 7 O -0.353 6.353 8 C -0.033 4.033 9 N -0.662 5.662 10 C -0.417 4.417 11 H 0.111 0.889 12 C -0.168 4.168 13 N -0.511 5.511 14 Si 0.740 3.260 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.208 1.208 18 S 2.775 3.225 19 O -0.962 6.962 20 O -0.995 6.995 21 N -0.848 5.848 22 C -0.038 4.038 23 C -0.041 4.041 24 N -0.186 5.186 25 C -0.040 4.040 26 N -0.130 5.130 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.191 0.809 31 H 0.242 0.758 32 H 0.166 0.834 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.877 -10.267 -5.259 12.946 hybrid contribution 0.022 0.162 1.184 1.195 sum -5.856 -10.105 -4.075 12.370 Atomic orbital electron populations 1.20134 0.86865 1.02964 1.02755 1.22201 0.96796 0.90862 0.98501 1.21564 0.88927 1.01114 1.20095 1.18250 0.89656 0.81971 1.00009 1.43542 1.06558 1.06651 1.74277 1.22797 0.94260 0.80186 0.74593 1.90577 1.26959 1.72857 1.44919 1.21317 0.92421 0.82065 1.07495 1.52721 1.79553 1.14089 1.19861 1.19019 1.16547 1.21667 0.84483 0.88943 1.25237 0.93929 0.97844 0.99769 1.69884 1.09091 1.42672 1.29484 0.86080 0.79729 0.78012 0.82160 1.19111 1.20856 1.20779 1.02938 0.72737 0.73700 0.73101 1.93502 1.85937 1.32757 1.84029 1.93459 1.61742 1.78563 1.65779 1.57774 1.27944 1.38091 1.60999 1.21296 0.89754 0.92367 1.00426 1.21283 1.01807 0.88214 0.92783 1.48375 1.05988 1.02435 1.61819 1.21749 0.84135 0.95032 1.03057 1.77307 0.85042 1.21721 1.28935 0.90715 0.91300 0.90405 0.80928 0.75825 0.83432 0.88735 0.92270 0.93803 0.91822 0.90978 0.93177 0.91233 0.92848 0.90987 0.90090 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.44 36.01 0.38 -0.38 16 2 C 0.08 1.26 7.21 -82.44 -0.59 0.66 16 3 C -0.29 -4.86 9.58 -39.78 -0.38 -5.24 16 4 C 0.32 5.17 7.66 -153.16 -1.17 3.99 16 5 N -0.66 -10.05 5.42 -11.46 -0.06 -10.11 16 6 C 0.50 9.25 7.09 -10.98 -0.08 9.17 16 7 O -0.48 -9.91 12.51 5.55 0.07 -9.84 16 8 C 0.10 2.03 5.78 -5.19 -0.03 2.00 16 9 N -0.83 -19.42 2.42 -61.09 -0.15 -19.56 16 10 C -0.28 -7.22 8.73 -15.06 -0.13 -7.35 16 11 H 0.09 2.36 7.92 -52.49 -0.42 1.94 16 12 C 0.04 0.93 4.99 -17.43 -0.09 0.85 16 13 N -0.87 -21.95 11.29 55.49 0.63 -21.32 16 14 Si 0.91 20.10 29.61 -169.99 -5.03 15.07 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 S 2.76 62.55 6.03 -107.50 -0.65 61.90 16 19 O -0.98 -24.88 16.37 -57.17 -0.94 -25.81 16 20 O -1.01 -23.67 15.92 -57.17 -0.91 -24.58 16 21 N -1.01 -18.81 3.64 -129.20 -0.47 -19.28 16 22 C 0.11 1.76 10.26 59.85 0.61 2.37 16 23 C 0.11 1.68 10.23 59.85 0.61 2.30 16 24 N -0.40 -5.71 4.02 -67.18 -0.27 -5.98 16 25 C 0.10 0.95 11.28 59.85 0.68 1.62 16 26 N -0.31 -4.81 12.57 33.65 0.42 -4.39 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.17 3.18 5.83 -52.49 -0.31 2.87 16 31 H 0.41 4.77 7.96 -40.82 -0.33 4.44 16 32 H 0.15 3.19 5.34 -51.93 -0.28 2.91 16 33 H 0.09 1.77 6.95 -51.93 -0.36 1.41 16 34 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.89 7.92 -51.93 -0.41 0.48 16 37 H 0.07 1.27 7.79 -51.93 -0.40 0.87 16 38 H 0.05 0.84 6.40 -51.93 -0.33 0.50 16 39 H 0.07 0.92 7.80 -51.92 -0.40 0.52 16 40 H 0.05 0.81 8.01 -51.93 -0.42 0.40 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.60 7.50 -51.93 -0.39 0.21 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -33.52 370.95 -7.68 -41.20 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.71 Total: 7.12 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.20 Total: 9.99 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: 0.10 Total: -80.64 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: -1.78 Total: -60.23 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Atomic # 16 Polarization: 62.55 SS G_CDS: -0.65 Total: 61.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.52 -7.68 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329944395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.773 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds