Wall clock time and date at job start Sat Apr 11 2020 07:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 120.00035 * 2 1 4 4 C 1.50702 * 109.46958 * 278.80640 * 3 2 1 5 5 H 1.08003 * 119.99719 * 5.37199 * 4 3 2 6 6 C 1.37878 * 119.99871 * 185.36900 * 4 3 2 7 7 N 1.31509 * 119.99577 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99919 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47203 * 90.00011 * 8 6 4 10 10 H 1.48503 * 109.46717 * 210.00018 * 8 6 4 11 11 H 1.48497 * 109.47218 * 329.99527 * 8 6 4 12 12 S 1.65604 * 119.99973 * 179.97438 * 2 1 3 13 13 O 1.42091 * 106.40187 * 337.90312 * 12 2 1 14 14 O 1.42100 * 106.39990 * 204.97992 * 12 2 1 15 15 N 1.65600 * 107.21393 * 91.44378 * 12 2 1 16 16 C 1.46497 * 119.99838 * 274.81164 * 15 12 2 17 17 C 1.53004 * 109.47391 * 299.04281 * 16 15 12 18 18 C 1.52999 * 109.47088 * 179.04503 * 16 15 12 19 19 N 1.46507 * 109.47084 * 179.97438 * 18 16 15 20 20 C 1.34949 * 126.03446 * 125.00062 * 19 18 16 21 21 C 1.35316 * 107.74358 * 180.02562 * 20 19 18 22 22 C 1.39873 * 107.92156 * 359.97438 * 21 20 19 23 23 N 1.30841 * 108.20165 * 359.97438 * 22 21 20 24 24 C 1.50699 * 109.47400 * 59.04332 * 16 15 12 25 25 N 1.34771 * 119.99908 * 45.87691 * 24 16 15 26 26 O 1.21287 * 119.99834 * 225.88416 * 24 16 15 27 27 H 1.08998 * 109.47227 * 270.00073 * 1 2 3 28 28 H 1.09008 * 109.47093 * 29.99738 * 1 2 3 29 29 H 1.08996 * 109.47244 * 150.00258 * 1 2 3 30 30 H 1.08998 * 109.46852 * 38.80353 * 3 2 1 31 31 H 1.08997 * 109.46838 * 158.80508 * 3 2 1 32 32 H 0.97007 * 119.99548 * 180.02562 * 7 6 4 33 33 H 0.96998 * 120.00220 * 94.81706 * 15 12 2 34 34 H 1.09009 * 109.46521 * 303.62288 * 17 16 15 35 35 H 1.09001 * 109.47401 * 63.61726 * 17 16 15 36 36 H 1.08992 * 109.47815 * 183.62444 * 17 16 15 37 37 H 1.09002 * 109.47577 * 59.99832 * 18 16 15 38 38 H 1.09000 * 109.46994 * 299.99575 * 18 16 15 39 39 H 1.07999 * 126.12989 * 0.03570 * 20 19 18 40 40 H 1.08004 * 126.04057 * 180.26256 * 21 20 19 41 41 H 1.07997 * 125.90037 * 180.02562 * 22 21 20 42 42 H 0.96997 * 119.99836 * 5.45468 * 25 24 16 43 43 H 0.96998 * 119.99847 * 185.44148 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2603 1.8126 -1.4041 5 1 1.7277 1.3140 -2.2005 6 6 2.9976 2.9464 -1.6719 7 7 3.0519 3.4212 -2.8971 8 14 3.9192 3.8082 -0.2944 9 1 5.2887 3.2441 -0.1866 10 1 4.0041 5.2612 -0.5891 11 1 3.1975 3.6044 0.9872 12 16 2.2930 -1.4342 0.0006 13 8 1.3998 -2.4129 0.5138 14 8 3.5637 -1.1635 0.5762 15 7 2.5725 -1.8394 -1.5805 16 6 1.5515 -2.5621 -2.3429 17 6 1.2782 -3.9123 -1.6771 18 6 2.0480 -2.7895 -3.7722 19 7 1.0272 -3.5128 -4.5345 20 6 0.4797 -3.1170 -5.7027 21 6 -0.4182 -4.0576 -6.0770 22 6 -0.4190 -5.0630 -5.1046 23 7 0.4477 -4.7379 -4.1799 24 6 0.2813 -1.7518 -2.3753 25 7 0.3300 -0.4333 -2.6500 26 8 -0.7847 -2.2863 -2.1541 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8901 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6856 1.9838 0.6440 31 1 3.2089 1.1043 0.3715 32 1 3.5710 4.2187 -3.0856 33 1 3.4123 -1.5983 -2.0018 34 1 2.2099 -4.4724 -1.5957 35 1 0.8640 -3.7496 -0.6821 36 1 0.5664 -4.4770 -2.2792 37 1 2.9667 -3.3756 -3.7488 38 1 2.2426 -1.8276 -4.2465 39 1 0.7159 -2.2117 -6.2422 40 1 -1.0235 -4.0380 -6.9713 41 1 -1.0290 -5.9541 -5.1156 42 1 1.1706 -0.0216 -2.9043 43 1 -0.4757 0.1039 -2.5936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424874621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:27 Heat of formation + Delta-G solvation = -23.249378 kcal Electronic energy + Delta-G solvation = -31144.401388 eV Core-core repulsion = 26967.928431 eV Total energy + Delta-G solvation = -4176.472957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.27050 -41.03698 -38.45608 -37.59124 -37.31495 -37.01317 -34.51100 -34.40895 -33.79011 -31.37069 -30.21642 -30.14285 -27.75568 -26.83514 -24.95647 -23.77232 -22.30874 -21.90707 -21.00661 -20.28519 -19.53191 -18.78183 -18.60849 -18.50791 -18.03393 -17.72331 -16.94831 -16.84316 -16.21558 -15.85147 -15.57722 -15.45691 -15.08551 -15.07714 -14.51218 -14.46296 -14.36255 -14.13591 -13.91096 -13.72792 -13.61280 -13.48779 -13.23358 -13.15234 -13.00682 -12.96965 -12.92378 -12.39699 -12.35604 -12.11163 -11.98486 -11.73683 -11.51986 -11.12503 -10.71228 -10.59072 -10.51831 -10.24726 -9.79414 -9.45338 -8.23914 -6.25703 -0.48307 1.02495 1.25036 1.39630 1.47057 1.51087 1.56978 1.95388 2.04938 2.34269 2.43134 2.49304 3.12499 3.20526 3.33088 3.51479 3.81445 3.91572 3.99391 4.10419 4.17716 4.34588 4.40548 4.58627 4.70078 4.76480 4.89336 4.94140 4.95578 5.01570 5.09179 5.21478 5.31202 5.47092 5.52382 5.67135 5.81782 5.93951 5.99093 6.13912 6.31652 6.40386 6.79986 6.83908 7.21937 7.39524 8.87616 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.004647 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.236758 B = 6024.104126 C = 6900.314640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.987 5.987 3 C 0.214 3.786 4 C -0.536 4.536 5 H 0.093 0.907 6 C 0.039 3.961 7 N -0.922 5.922 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.255 1.255 12 S 2.792 3.208 13 O -0.992 6.992 14 O -1.003 7.003 15 N -1.101 6.101 16 C 0.165 3.835 17 C -0.189 4.189 18 C 0.136 3.864 19 N -0.376 5.376 20 C 0.050 3.950 21 C -0.279 4.279 22 C 0.034 3.966 23 N -0.316 5.316 24 C 0.500 3.500 25 N -0.826 5.826 26 O -0.554 6.554 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.265 0.735 33 H 0.432 0.568 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.199 0.801 40 H 0.167 0.833 41 H 0.202 0.798 42 H 0.415 0.585 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -10.068 -6.265 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.829 5.829 3 C 0.090 3.910 4 C -0.575 4.575 5 H 0.111 0.889 6 C -0.162 4.162 7 N -0.562 5.562 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.179 1.179 12 S 2.800 3.200 13 O -0.975 6.975 14 O -0.987 6.987 15 N -0.864 5.864 16 C 0.071 3.929 17 C -0.247 4.247 18 C 0.013 3.987 19 N -0.160 5.160 20 C -0.095 4.095 21 C -0.308 4.308 22 C -0.152 4.152 23 N -0.137 5.137 24 C 0.282 3.718 25 N -0.394 5.394 26 O -0.431 6.431 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.270 0.730 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.216 0.784 40 H 0.184 0.816 41 H 0.219 0.781 42 H 0.250 0.750 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.893 -11.199 -4.161 12.292 hybrid contribution 0.498 1.906 -0.722 2.098 sum -2.395 -9.293 -4.882 10.767 Atomic orbital electron populations 1.21672 0.78395 1.03337 1.01806 1.57340 1.15102 1.21553 1.88857 1.19477 0.92065 0.81846 0.97642 1.21773 1.30588 1.10914 0.94228 0.88913 1.25334 0.96786 0.97619 0.96454 1.69923 1.42166 1.23838 1.20232 0.86358 0.80320 0.78256 0.81958 1.20100 1.21390 1.17908 1.01503 0.72439 0.72534 0.73519 1.93527 1.66529 1.58722 1.78754 1.93559 1.43214 1.85877 1.76070 1.55851 1.26624 1.71572 1.32372 1.20500 0.85201 0.92637 0.94556 1.22888 1.04287 0.94043 1.03530 1.22031 0.90086 0.99024 0.87605 1.48437 1.32769 1.16797 1.17951 1.23136 0.96257 1.01519 0.88564 1.21813 1.06990 0.97071 1.04931 1.24431 0.97617 1.01001 0.92148 1.77140 1.14654 0.98336 1.23596 1.20903 0.90902 0.83433 0.76581 1.44414 1.16524 1.08533 1.69887 1.90742 1.31468 1.71395 1.49474 0.92897 0.89601 0.91819 0.94153 0.94673 0.92535 0.73043 0.90904 0.90184 0.87588 0.85755 0.84977 0.78416 0.81577 0.78137 0.75022 0.76104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.02 8.13 127.77 1.04 4.06 16 2 N -0.99 -35.29 2.75 -543.22 -1.49 -36.78 16 3 C 0.21 8.65 4.51 85.63 0.39 9.03 16 4 C -0.54 -23.27 9.90 25.60 0.25 -23.01 16 5 H 0.09 3.81 4.76 -2.91 -0.01 3.80 16 6 C 0.04 1.85 5.47 84.66 0.46 2.32 16 7 N -0.92 -46.86 13.96 21.45 0.30 -46.56 16 8 Si 0.90 38.46 27.37 68.60 1.88 40.34 16 9 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.26 -10.37 6.70 99.48 0.67 -9.70 16 12 S 2.79 99.91 5.74 -56.49 -0.32 99.59 16 13 O -0.99 -38.74 13.35 -128.00 -1.71 -40.45 16 14 O -1.00 -41.34 16.70 -128.00 -2.14 -43.48 16 15 N -1.10 -30.61 5.27 -155.19 -0.82 -31.43 16 16 C 0.16 4.53 0.76 2.86 0.00 4.53 16 17 C -0.19 -5.93 7.28 71.98 0.52 -5.40 16 18 C 0.14 2.83 5.57 86.38 0.48 3.31 16 19 N -0.38 -8.82 3.25 -348.04 -1.13 -9.96 16 20 C 0.05 1.00 11.45 83.54 0.96 1.96 16 21 C -0.28 -5.49 10.80 21.99 0.24 -5.25 16 22 C 0.03 0.75 12.03 85.24 1.03 1.78 16 23 N -0.32 -8.52 9.29 -57.02 -0.53 -9.05 16 24 C 0.50 15.40 3.71 87.66 0.33 15.72 16 25 N -0.83 -22.73 5.93 -173.53 -1.03 -23.76 16 26 O -0.55 -20.79 15.98 -3.05 -0.05 -20.84 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 2.58 7.66 -2.38 -0.02 2.56 16 29 H 0.06 2.14 4.07 -2.39 -0.01 2.13 16 30 H 0.04 1.62 7.56 -2.39 -0.02 1.60 16 31 H 0.04 1.51 6.01 -2.39 -0.01 1.49 16 32 H 0.27 13.09 8.31 -92.70 -0.77 12.32 16 33 H 0.43 9.84 8.61 -96.75 -0.83 9.01 16 34 H 0.07 2.01 8.14 -2.38 -0.02 2.00 16 35 H 0.08 2.98 5.12 -2.39 -0.01 2.97 16 36 H 0.11 3.50 4.87 -2.39 -0.01 3.49 16 37 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.13 2.10 8.07 -2.39 -0.02 2.08 16 39 H 0.20 2.66 8.06 -2.91 -0.02 2.63 16 40 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.20 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.41 11.55 6.01 -92.71 -0.56 10.99 16 43 H 0.41 10.78 8.25 -92.71 -0.76 10.02 16 Total: -1.00 -67.00 347.98 -2.44 -69.44 By element: Atomic # 1 Polarization: 44.98 SS G_CDS: -1.09 Total: 43.89 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.69 Total: 9.05 kcal Atomic # 7 Polarization: -152.84 SS G_CDS: -4.70 Total: -157.54 kcal Atomic # 8 Polarization: -100.87 SS G_CDS: -3.89 Total: -104.77 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.88 Total: 40.34 kcal Atomic # 16 Polarization: 99.91 SS G_CDS: -0.32 Total: 99.59 kcal Total: -67.00 -2.44 -69.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424874621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.192 kcal (2) G-P(sol) polarization free energy of solvation -66.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds