Wall clock time and date at job start Sat Apr 11 2020 07:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47437 * 2 1 4 4 N 1.30495 * 125.65385 * 89.97420 * 3 2 1 5 5 C 1.34129 * 109.25680 * 180.02562 * 4 3 2 6 6 C 1.34666 * 108.02164 * 359.97438 * 5 4 3 7 7 N 1.35048 * 125.64904 * 270.28895 * 3 2 1 8 8 C 1.46507 * 126.39666 * 359.97438 * 7 3 2 9 9 C 1.52998 * 109.46791 * 85.14779 * 8 7 3 10 10 N 1.46497 * 109.47167 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00534 * 179.97438 * 10 9 8 12 12 O 1.21557 * 119.99516 * 0.02562 * 11 10 9 13 13 C 1.47854 * 120.00351 * 180.02562 * 11 10 9 14 14 C 1.39670 * 120.10485 * 359.72308 * 13 11 10 15 15 C 1.38041 * 120.04211 * 179.74583 * 14 13 11 16 16 C 1.38171 * 120.24244 * 0.55880 * 15 14 13 17 17 C 1.39184 * 120.20335 * 359.69561 * 16 15 14 18 18 S 1.76203 * 120.02145 * 180.02562 * 17 16 15 19 19 C 1.76201 * 99.99687 * 265.52893 * 18 17 16 20 20 H 1.07998 * 120.00286 * 5.11586 * 19 18 17 21 21 C 1.38728 * 119.99851 * 185.12068 * 19 18 17 22 22 N 1.31616 * 120.00266 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99851 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47282 * 90.00196 * 23 21 19 25 25 H 1.48499 * 109.47105 * 209.99943 * 23 21 19 26 26 H 1.48496 * 109.47239 * 329.99886 * 23 21 19 27 27 C 1.38878 * 119.95788 * 0.02567 * 17 16 15 28 28 H 1.09004 * 109.47232 * 300.00533 * 1 2 3 29 29 H 1.09007 * 109.47140 * 59.99749 * 1 2 3 30 30 H 1.08997 * 109.47343 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47232 * 239.99467 * 2 1 3 32 32 H 1.08994 * 109.46998 * 119.99882 * 2 1 3 33 33 H 1.08001 * 125.98555 * 180.02562 * 5 4 3 34 34 H 1.08000 * 126.59266 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47133 * 205.15023 * 8 7 3 36 36 H 1.09001 * 109.46962 * 325.15246 * 8 7 3 37 37 H 1.08998 * 109.47482 * 300.00030 * 9 8 7 38 38 H 1.08995 * 109.47092 * 60.00061 * 9 8 7 39 39 H 0.97006 * 119.99630 * 0.02562 * 10 9 8 40 40 H 1.08004 * 119.97828 * 359.97438 * 14 13 11 41 41 H 1.08003 * 119.87613 * 180.25243 * 15 14 13 42 42 H 1.07999 * 119.90197 * 179.72018 * 16 15 14 43 43 H 0.96999 * 120.00300 * 179.97438 * 22 21 19 44 44 H 1.07995 * 120.11873 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2855 2.1381 1.0603 5 6 2.7141 3.3513 0.6817 6 6 2.7276 3.3870 -0.6644 7 7 2.2895 2.1647 -1.0974 8 6 2.1328 1.7411 -2.4911 9 6 0.6846 1.9628 -2.9317 10 7 0.5279 1.5398 -4.3255 11 6 -0.6720 1.6433 -4.9305 12 8 -1.6242 2.0881 -4.3196 13 6 -0.8302 1.2159 -6.3370 14 6 0.2638 0.7099 -7.0427 15 6 0.1135 0.3063 -8.3542 16 6 -1.1148 0.4112 -8.9781 17 6 -2.2106 0.9189 -8.2862 18 16 -3.7750 1.0500 -9.0864 19 6 -3.6952 2.7202 -9.6421 20 1 -2.7891 3.2919 -9.5062 21 6 -4.7965 3.3009 -10.2541 22 7 -4.7372 4.5486 -10.6688 23 14 -6.3636 2.3118 -10.4897 24 1 -7.2419 2.4862 -9.3051 25 1 -7.0716 2.7881 -11.7051 26 1 -6.0233 0.8749 -10.6464 27 6 -2.0702 1.3221 -6.9647 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 2.9993 4.1579 1.3409 34 1 3.0222 4.2216 -1.2834 35 1 2.7992 2.3254 -3.1256 36 1 2.3816 0.6835 -2.5795 37 1 0.0182 1.3785 -2.2972 38 1 0.4357 3.0203 -2.8432 39 1 1.2877 1.1845 -4.8128 40 1 1.2272 0.6309 -6.5608 41 1 0.9603 -0.0884 -8.8961 42 1 -1.2252 0.0980 -10.0058 43 1 -5.5071 4.9545 -11.0971 44 1 -2.9188 1.7160 -6.4252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455621578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:34 Heat of formation + Delta-G solvation = 44.942078 kcal Electronic energy + Delta-G solvation = -26044.493239 eV Core-core repulsion = 22281.826549 eV Total energy + Delta-G solvation = -3762.666690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.49936 -40.15796 -38.09450 -36.18539 -34.17369 -33.84663 -32.54484 -31.29565 -30.73466 -29.19782 -28.72539 -25.72710 -24.66765 -24.10855 -23.18614 -22.29787 -21.75350 -20.77495 -19.82289 -18.55788 -17.55299 -17.44771 -16.29095 -16.17324 -16.00359 -15.49232 -15.22285 -15.05066 -14.93169 -14.68226 -14.46727 -14.12008 -13.87341 -13.74318 -13.55845 -13.53402 -12.97495 -12.87069 -12.58991 -12.56709 -12.18026 -12.02758 -11.89400 -11.42702 -11.39103 -11.28415 -11.13703 -10.70958 -10.30062 -10.12953 -9.98843 -9.90649 -9.44979 -9.27694 -9.12631 -8.75878 -8.69504 -8.24162 -7.19014 -6.37211 -4.13367 0.98202 1.49208 1.64683 2.14946 2.79223 2.84235 2.89681 3.05607 3.24053 3.35001 3.45405 3.94946 4.00090 4.05901 4.10043 4.22102 4.38304 4.53256 4.64877 4.71541 4.83722 4.89224 4.91782 4.93331 5.01345 5.07204 5.16887 5.22673 5.25092 5.39027 5.47791 5.56316 5.65037 5.68696 5.79808 5.92701 5.95133 6.01281 6.08227 6.39392 6.43172 6.46687 6.73578 6.79503 6.99967 7.21416 7.78630 7.86811 8.06194 8.39744 9.06521 10.72154 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018899 B = 0.001995 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.198637 B =14029.596610 C =14309.678951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C 0.212 3.788 4 N -0.490 5.490 5 C -0.027 4.027 6 C -0.056 4.056 7 N -0.453 5.453 8 C 0.094 3.906 9 C 0.102 3.898 10 N -0.732 5.732 11 C 0.567 3.433 12 O -0.527 6.527 13 C -0.154 4.154 14 C -0.086 4.086 15 C -0.139 4.139 16 C -0.050 4.050 17 C -0.085 4.085 18 S -0.111 6.111 19 C -0.510 4.510 20 H 0.091 0.909 21 C 0.095 3.905 22 N -0.875 5.875 23 Si 0.858 3.142 24 H -0.265 1.265 25 H -0.272 1.272 26 H -0.239 1.239 27 C -0.015 4.015 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.170 0.830 34 H 0.175 0.825 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.400 0.600 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.272 0.728 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.038 -9.478 15.515 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.078 4.078 3 C -0.051 4.051 4 N -0.208 5.208 5 C -0.174 4.174 6 C -0.188 4.188 7 N -0.137 5.137 8 C -0.030 4.030 9 C -0.022 4.022 10 N -0.387 5.387 11 C 0.356 3.644 12 O -0.403 6.403 13 C -0.159 4.159 14 C -0.105 4.105 15 C -0.159 4.159 16 C -0.071 4.071 17 C -0.195 4.195 18 S 0.123 5.877 19 C -0.657 4.657 20 H 0.109 0.891 21 C -0.114 4.114 22 N -0.511 5.511 23 Si 0.682 3.318 24 H -0.190 1.190 25 H -0.197 1.197 26 H -0.163 1.163 27 C -0.037 4.037 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.188 0.812 34 H 0.193 0.807 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.236 0.764 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.082 0.918 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 16.250 -10.029 16.395 25.168 hybrid contribution 0.868 1.163 -1.173 1.866 sum 17.118 -8.866 15.222 24.563 Atomic orbital electron populations 1.21872 0.93597 1.02674 1.02930 1.19993 0.96667 0.87192 1.03967 1.23358 1.03737 0.96713 0.81244 1.70259 1.18080 1.04305 1.28166 1.22309 1.06113 0.96228 0.92790 1.22757 1.09368 0.89676 0.97025 1.45201 1.49561 1.12225 1.06666 1.21964 0.97757 1.02891 0.80376 1.21703 0.95200 1.02158 0.83172 1.45667 1.12485 1.67630 1.12908 1.18369 0.82046 0.77448 0.86552 1.90809 1.38994 1.44534 1.65990 1.19758 0.95676 1.07128 0.93300 1.21148 0.96842 0.97599 0.94893 1.21054 0.97732 1.02274 0.94823 1.21927 0.91350 0.94083 0.99695 1.22226 1.00411 1.01170 0.95723 1.83101 1.15739 1.20523 1.68336 1.22231 1.04333 0.94388 1.44764 0.89084 1.24746 0.98302 0.94457 0.93890 1.69917 1.31417 1.11746 1.38010 0.86734 0.83690 0.82336 0.79008 1.18994 1.19748 1.16331 1.21914 0.96168 0.92155 0.93449 0.91691 0.92339 0.91354 0.90479 0.88628 0.81240 0.80746 0.88033 0.88218 0.90081 0.90543 0.76390 0.86370 0.85540 0.84814 0.91754 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.15 0.37 -0.76 16 2 C -0.04 -0.27 6.24 -27.89 -0.17 -0.44 16 3 C 0.21 2.02 7.16 -155.41 -1.11 0.90 16 4 N -0.49 -5.71 11.25 -10.82 -0.12 -5.83 16 5 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 6 C -0.06 -0.46 11.58 -16.56 -0.19 -0.65 16 7 N -0.45 -3.63 2.75 -113.90 -0.31 -3.94 16 8 C 0.09 0.51 6.01 -4.04 -0.02 0.48 16 9 C 0.10 0.86 6.00 -4.04 -0.02 0.84 16 10 N -0.73 -6.73 5.51 -61.25 -0.34 -7.06 16 11 C 0.57 8.20 7.77 -12.33 -0.10 8.11 16 12 O -0.53 -9.83 16.34 5.32 0.09 -9.74 16 13 C -0.15 -2.34 5.87 -105.00 -0.62 -2.95 16 14 C -0.09 -1.01 9.54 -39.12 -0.37 -1.39 16 15 C -0.14 -1.76 10.02 -39.68 -0.40 -2.16 16 16 C -0.05 -0.81 9.79 -39.25 -0.38 -1.20 16 17 C -0.08 -1.69 5.45 -38.99 -0.21 -1.90 16 18 S -0.11 -2.63 19.38 -107.50 -2.08 -4.71 16 19 C -0.51 -14.40 10.01 30.91 0.31 -14.09 16 20 H 0.09 2.79 8.02 -52.49 -0.42 2.37 16 21 C 0.10 2.71 5.50 -17.46 -0.10 2.61 16 22 N -0.87 -26.00 13.97 55.49 0.77 -25.22 16 23 Si 0.86 20.76 27.73 -169.99 -4.71 16.04 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.24 -5.58 6.74 56.52 0.38 -5.20 16 27 C -0.02 -0.29 9.34 -38.92 -0.36 -0.65 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.49 5.49 -51.93 -0.28 0.21 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.38 7.18 -51.93 -0.37 0.01 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.10 0.37 8.13 -51.93 -0.42 -0.05 16 36 H 0.10 0.35 7.21 -51.93 -0.37 -0.02 16 37 H 0.08 0.78 5.48 -51.93 -0.28 0.50 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.40 2.33 6.50 -40.82 -0.27 2.07 16 40 H 0.12 0.86 6.40 -52.48 -0.34 0.52 16 41 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 42 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.14 2.91 7.65 -52.49 -0.40 2.51 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -35.66 385.08 -10.21 -45.87 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.70 Total: 2.52 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -3.60 Total: -13.72 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.00 Total: -42.06 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.71 Total: 16.04 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.08 Total: -4.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.66 -10.21 -45.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455621578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.809 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds