Wall clock time and date at job start Sat Apr 11 2020 07:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47437 * 2 1 4 4 N 1.30495 * 125.65385 * 89.97420 * 3 2 1 5 5 C 1.34129 * 109.25680 * 180.02562 * 4 3 2 6 6 C 1.34666 * 108.02164 * 359.97438 * 5 4 3 7 7 N 1.35048 * 125.64904 * 270.28895 * 3 2 1 8 8 C 1.46507 * 126.39666 * 359.97438 * 7 3 2 9 9 C 1.52998 * 109.46791 * 85.14779 * 8 7 3 10 10 N 1.46497 * 109.47167 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00534 * 179.97438 * 10 9 8 12 12 O 1.21557 * 119.99516 * 0.02562 * 11 10 9 13 13 C 1.47854 * 120.00351 * 180.02562 * 11 10 9 14 14 C 1.39670 * 120.10485 * 359.72308 * 13 11 10 15 15 C 1.38041 * 120.04211 * 179.74583 * 14 13 11 16 16 C 1.38171 * 120.24244 * 0.55880 * 15 14 13 17 17 C 1.39184 * 120.20335 * 359.69561 * 16 15 14 18 18 S 1.76203 * 120.02145 * 180.02562 * 17 16 15 19 19 C 1.76201 * 99.99687 * 265.52893 * 18 17 16 20 20 H 1.07998 * 120.00286 * 5.11586 * 19 18 17 21 21 C 1.38728 * 119.99851 * 185.12068 * 19 18 17 22 22 N 1.31616 * 120.00266 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99851 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47282 * 90.00196 * 23 21 19 25 25 H 1.48499 * 109.47105 * 209.99943 * 23 21 19 26 26 H 1.48496 * 109.47239 * 329.99886 * 23 21 19 27 27 C 1.38878 * 119.95788 * 0.02567 * 17 16 15 28 28 H 1.09004 * 109.47232 * 300.00533 * 1 2 3 29 29 H 1.09007 * 109.47140 * 59.99749 * 1 2 3 30 30 H 1.08997 * 109.47343 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47232 * 239.99467 * 2 1 3 32 32 H 1.08994 * 109.46998 * 119.99882 * 2 1 3 33 33 H 1.08001 * 125.98555 * 180.02562 * 5 4 3 34 34 H 1.08000 * 126.59266 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47133 * 205.15023 * 8 7 3 36 36 H 1.09001 * 109.46962 * 325.15246 * 8 7 3 37 37 H 1.08998 * 109.47482 * 300.00030 * 9 8 7 38 38 H 1.08995 * 109.47092 * 60.00061 * 9 8 7 39 39 H 0.97006 * 119.99630 * 0.02562 * 10 9 8 40 40 H 1.08004 * 119.97828 * 359.97438 * 14 13 11 41 41 H 1.08003 * 119.87613 * 180.25243 * 15 14 13 42 42 H 1.07999 * 119.90197 * 179.72018 * 16 15 14 43 43 H 0.96999 * 120.00300 * 179.97438 * 22 21 19 44 44 H 1.07995 * 120.11873 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2855 2.1381 1.0603 5 6 2.7141 3.3513 0.6817 6 6 2.7276 3.3870 -0.6644 7 7 2.2895 2.1647 -1.0974 8 6 2.1328 1.7411 -2.4911 9 6 0.6846 1.9628 -2.9317 10 7 0.5279 1.5398 -4.3255 11 6 -0.6720 1.6433 -4.9305 12 8 -1.6242 2.0881 -4.3196 13 6 -0.8302 1.2159 -6.3370 14 6 0.2638 0.7099 -7.0427 15 6 0.1135 0.3063 -8.3542 16 6 -1.1148 0.4112 -8.9781 17 6 -2.2106 0.9189 -8.2862 18 16 -3.7750 1.0500 -9.0864 19 6 -3.6952 2.7202 -9.6421 20 1 -2.7891 3.2919 -9.5062 21 6 -4.7965 3.3009 -10.2541 22 7 -4.7372 4.5486 -10.6688 23 14 -6.3636 2.3118 -10.4897 24 1 -7.2419 2.4862 -9.3051 25 1 -7.0716 2.7881 -11.7051 26 1 -6.0233 0.8749 -10.6464 27 6 -2.0702 1.3221 -6.9647 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 2.9993 4.1579 1.3409 34 1 3.0222 4.2216 -1.2834 35 1 2.7992 2.3254 -3.1256 36 1 2.3816 0.6835 -2.5795 37 1 0.0182 1.3785 -2.2972 38 1 0.4357 3.0203 -2.8432 39 1 1.2877 1.1845 -4.8128 40 1 1.2272 0.6309 -6.5608 41 1 0.9603 -0.0884 -8.8961 42 1 -1.2252 0.0980 -10.0058 43 1 -5.5071 4.9545 -11.0971 44 1 -2.9188 1.7160 -6.4252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455621578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:34 Heat of formation + Delta-G solvation = 21.318555 kcal Electronic energy + Delta-G solvation = -26045.517632 eV Core-core repulsion = 22281.826549 eV Total energy + Delta-G solvation = -3763.691083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.12172 -41.28932 -39.27352 -37.02801 -34.83651 -34.73294 -34.57728 -32.43919 -31.96469 -29.91523 -29.41575 -27.93348 -25.55698 -24.69084 -24.20096 -23.45930 -22.38805 -21.84864 -20.56123 -20.02020 -19.06011 -18.20063 -17.24444 -17.18883 -17.11329 -16.86703 -16.63852 -16.10623 -15.80713 -15.67406 -15.29425 -15.05765 -14.90892 -14.89682 -14.70978 -14.42022 -14.21911 -13.92959 -13.64734 -13.44758 -13.17339 -13.12382 -13.08038 -12.79649 -12.69219 -12.46722 -12.29513 -11.96153 -11.86714 -11.33231 -11.23313 -10.98503 -10.94667 -10.66306 -10.39852 -9.94733 -9.75604 -9.33407 -9.15717 -8.55376 -6.29381 -0.22849 0.20352 1.00365 1.05964 1.30158 1.42503 1.50942 1.64698 1.74997 2.15640 2.20151 2.23665 2.58309 2.82914 2.95630 3.46491 3.52193 3.62146 3.63195 3.87007 3.91331 4.01842 4.10066 4.18164 4.31064 4.34110 4.34676 4.44268 4.56347 4.59922 4.67857 4.69167 4.76372 4.89384 4.95612 5.06583 5.13582 5.17657 5.30121 5.32644 5.33955 5.44277 5.67274 5.81649 5.82630 6.08627 6.21329 6.36330 6.87267 7.05304 7.13696 8.58126 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018899 B = 0.001995 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.198637 B =14029.596610 C =14309.678951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C 0.200 3.800 4 N -0.532 5.532 5 C -0.057 4.057 6 C -0.051 4.051 7 N -0.453 5.453 8 C 0.099 3.901 9 C 0.104 3.896 10 N -0.700 5.700 11 C 0.566 3.434 12 O -0.581 6.581 13 C -0.158 4.158 14 C -0.055 4.055 15 C -0.121 4.121 16 C -0.058 4.058 17 C -0.121 4.121 18 S -0.118 6.118 19 C -0.523 4.523 20 H 0.047 0.953 21 C 0.040 3.960 22 N -0.919 5.919 23 Si 0.921 3.079 24 H -0.264 1.264 25 H -0.257 1.257 26 H -0.226 1.226 27 C -0.044 4.044 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.180 0.820 34 H 0.203 0.797 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.423 0.577 40 H 0.182 0.818 41 H 0.179 0.821 42 H 0.139 0.861 43 H 0.278 0.722 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.481 -12.003 15.078 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 C -0.063 4.063 4 N -0.252 5.252 5 C -0.204 4.204 6 C -0.183 4.183 7 N -0.136 5.136 8 C -0.023 4.023 9 C -0.020 4.020 10 N -0.355 5.355 11 C 0.354 3.646 12 O -0.461 6.461 13 C -0.163 4.163 14 C -0.073 4.073 15 C -0.141 4.141 16 C -0.079 4.079 17 C -0.231 4.231 18 S 0.116 5.884 19 C -0.670 4.670 20 H 0.065 0.935 21 C -0.165 4.165 22 N -0.557 5.557 23 Si 0.742 3.258 24 H -0.188 1.188 25 H -0.182 1.182 26 H -0.149 1.149 27 C -0.066 4.066 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.197 0.803 34 H 0.220 0.780 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.262 0.738 40 H 0.199 0.801 41 H 0.197 0.803 42 H 0.157 0.843 43 H 0.087 0.913 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 19.764 -12.577 15.952 28.342 hybrid contribution 0.034 1.961 -0.907 2.161 sum 19.798 -10.616 15.046 27.038 Atomic orbital electron populations 1.21825 0.94312 1.03167 1.01363 1.20091 0.95854 0.86156 1.05446 1.23787 1.03500 0.97583 0.81403 1.70205 1.19506 1.05521 1.29946 1.22673 1.07235 0.96324 0.94147 1.23206 1.07984 0.90279 0.96831 1.45339 1.48946 1.11951 1.07377 1.22130 0.95606 1.05354 0.79234 1.21699 0.97491 1.00621 0.82235 1.45314 1.11297 1.65733 1.13148 1.18351 0.82891 0.77091 0.86270 1.90796 1.41228 1.47124 1.66996 1.19879 0.95209 1.07223 0.93973 1.21800 0.97838 0.93400 0.94279 1.21594 0.97219 1.00151 0.95086 1.22107 0.91927 0.93779 1.00091 1.22074 0.99478 1.05262 0.96335 1.82651 1.20125 1.16652 1.69002 1.22373 1.02828 0.96997 1.44781 0.93516 1.25735 1.01792 0.95564 0.93454 1.70025 1.32803 1.13613 1.39257 0.85775 0.79166 0.81479 0.79363 1.18831 1.18166 1.14912 1.21646 0.97290 0.94121 0.93506 0.93644 0.93484 0.89795 0.87670 0.88439 0.80301 0.78022 0.85131 0.85212 0.91349 0.92682 0.73752 0.80055 0.80343 0.84343 0.91272 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.89 71.98 0.71 -1.36 16 2 C -0.04 -0.43 6.24 29.85 0.19 -0.25 16 3 C 0.20 3.52 7.16 138.13 0.99 4.51 16 4 N -0.53 -12.32 11.25 -188.13 -2.12 -14.44 16 5 C -0.06 -1.09 11.87 83.52 0.99 -0.10 16 6 C -0.05 -0.72 11.58 83.09 0.96 0.24 16 7 N -0.45 -6.07 2.75 -514.28 -1.41 -7.49 16 8 C 0.10 0.63 6.01 86.38 0.52 1.15 16 9 C 0.10 1.49 6.00 86.38 0.52 2.01 16 10 N -0.70 -10.23 5.51 -465.98 -2.57 -12.80 16 11 C 0.57 15.60 7.77 86.79 0.67 16.27 16 12 O -0.58 -22.39 16.34 -3.90 -0.06 -22.45 16 13 C -0.16 -4.52 5.87 -20.11 -0.12 -4.64 16 14 C -0.05 -0.99 9.54 22.57 0.22 -0.78 16 15 C -0.12 -2.44 10.02 22.21 0.22 -2.22 16 16 C -0.06 -1.81 9.79 22.48 0.22 -1.59 16 17 C -0.12 -4.92 5.45 22.65 0.12 -4.79 16 18 S -0.12 -5.80 19.38 -56.49 -1.09 -6.89 16 19 C -0.52 -31.11 10.01 67.94 0.68 -30.43 16 20 H 0.05 3.07 8.02 -2.91 -0.02 3.05 16 21 C 0.04 2.34 5.50 84.84 0.47 2.80 16 22 N -0.92 -56.89 13.97 21.63 0.30 -56.59 16 23 Si 0.92 43.88 27.73 68.60 1.90 45.78 16 24 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.23 -10.17 6.74 99.48 0.67 -9.50 16 27 C -0.04 -1.73 9.34 22.70 0.21 -1.52 16 28 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.05 0.77 5.49 -2.38 -0.01 0.75 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 0.62 7.18 -2.38 -0.02 0.60 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.20 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.13 0.17 8.13 -2.39 -0.02 0.15 16 36 H 0.13 0.12 7.21 -2.39 -0.02 0.10 16 37 H 0.07 1.23 5.48 -2.39 -0.01 1.21 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.42 2.19 6.50 -92.70 -0.60 1.59 16 40 H 0.18 1.01 6.40 -2.91 -0.02 0.99 16 41 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 43 H 0.28 15.80 8.31 -92.71 -0.77 15.02 16 44 H 0.10 4.74 7.65 -2.91 -0.02 4.72 16 Total: -1.00 -88.35 385.08 2.92 -85.43 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.39 Total: 10.13 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 7.57 Total: -20.70 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -5.80 Total: -91.31 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.90 Total: 45.78 kcal Atomic # 16 Polarization: -5.80 SS G_CDS: -1.09 Total: -6.89 kcal Total: -88.35 2.92 -85.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455621578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.753 kcal (2) G-P(sol) polarization free energy of solvation -88.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds