Wall clock time and date at job start Sat Apr 11 2020 07:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38901 * 119.47814 * 2 1 4 4 C 1.36812 * 120.30104 * 179.97438 * 3 2 1 5 5 C 1.38691 * 119.62904 * 359.97438 * 4 3 2 6 6 S 1.76254 * 134.18086 * 180.02562 * 5 4 3 7 7 N 1.56004 * 97.56060 * 179.75090 * 6 5 4 8 8 C 1.29683 * 111.74473 * 0.36093 * 7 6 5 9 9 C 1.47379 * 121.83278 * 179.83819 * 8 7 6 10 10 O 1.21615 * 119.99960 * 179.72514 * 9 8 7 11 11 N 1.34780 * 120.00016 * 359.71911 * 9 8 7 12 12 C 1.47430 * 125.64494 * 4.67364 * 11 9 8 13 13 C 1.54911 * 104.82719 * 204.15941 * 12 11 9 14 14 C 1.55151 * 101.58388 * 322.99425 * 13 12 11 15 15 C 1.47018 * 125.64907 * 184.71213 * 11 9 8 16 16 H 1.09005 * 109.88154 * 59.33720 * 15 11 9 17 17 C 1.52995 * 109.88256 * 298.32326 * 15 11 9 18 18 N 1.46499 * 109.47305 * 175.97326 * 17 15 11 19 19 C 1.36936 * 120.00526 * 174.94490 * 18 17 15 20 20 H 1.08000 * 119.99520 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00345 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00033 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47259 * 180.02562 * 23 21 19 25 25 H 1.48494 * 109.47468 * 300.00567 * 23 21 19 26 26 H 1.48501 * 109.46878 * 60.00623 * 23 21 19 27 27 C 1.40672 * 120.67137 * 359.97438 * 5 4 3 28 28 C 1.36336 * 119.47925 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47533 * 270.02269 * 1 2 3 30 30 H 1.09002 * 109.46973 * 30.02848 * 1 2 3 31 31 H 1.09007 * 109.46751 * 150.02159 * 1 2 3 32 32 H 1.08000 * 119.85484 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.18332 * 180.02562 * 4 3 2 34 34 H 1.08997 * 110.36663 * 323.00220 * 12 11 9 35 35 H 1.08999 * 110.36333 * 85.21308 * 12 11 9 36 36 H 1.09000 * 111.00119 * 81.06723 * 13 12 11 37 37 H 1.08996 * 111.00065 * 204.91180 * 13 12 11 38 38 H 1.09005 * 110.71491 * 277.13726 * 14 13 12 39 39 H 1.09002 * 110.72058 * 153.86584 * 14 13 12 40 40 H 1.09002 * 109.47232 * 55.97429 * 17 15 11 41 41 H 1.08997 * 109.47497 * 295.97395 * 17 15 11 42 42 H 0.97003 * 119.99748 * 354.94035 * 18 17 15 43 43 H 0.97002 * 119.99941 * 359.97438 * 22 21 19 44 44 H 1.07990 * 120.02123 * 0.02675 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2092 0.0000 4 6 3.5585 1.2288 0.0005 5 6 4.2614 0.0333 0.0016 6 16 5.9736 -0.3850 0.0031 7 7 5.8060 -1.9360 0.0104 8 6 4.5568 -2.2843 0.0048 9 6 4.1443 -3.6992 0.0063 10 8 2.9629 -3.9881 0.0059 11 7 5.0762 -4.6729 0.0080 12 6 6.5329 -4.4678 0.1062 13 6 7.1554 -5.7299 -0.5414 14 6 6.1729 -6.8363 -0.0749 15 6 4.8086 -6.1153 -0.0885 16 1 4.2808 -6.3331 -1.0170 17 6 3.9680 -6.5696 1.1065 18 7 3.6257 -7.9857 0.9525 19 6 2.9621 -8.6426 1.9542 20 1 2.6907 -8.1165 2.8575 21 6 2.6373 -9.9842 1.8081 22 7 2.9676 -10.6252 0.7070 23 14 1.7327 -10.8803 3.1748 24 1 1.5067 -12.2928 2.7756 25 1 2.5470 -10.8414 4.4159 26 1 0.4255 -10.2195 3.4194 27 6 3.5821 -1.1986 0.0027 28 6 2.1780 -1.1869 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6397 2.1382 0.0004 33 1 4.0881 2.1701 0.0009 34 1 6.8280 -3.5742 -0.4438 35 1 6.8350 -4.3868 1.1503 36 1 7.1636 -5.6476 -1.6283 37 1 8.1592 -5.9112 -0.1573 38 1 6.4212 -7.1730 0.9317 39 1 6.1740 -7.6727 -0.7738 40 1 3.0538 -5.9779 1.1536 41 1 4.5380 -6.4314 2.0252 42 1 3.8691 -8.4580 0.1410 43 1 3.4377 -10.1599 -0.0026 44 1 1.6299 -2.1173 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483941578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:41 Heat of formation + Delta-G solvation = 42.454794 kcal Electronic energy + Delta-G solvation = -27426.648734 eV Core-core repulsion = 23663.874187 eV Total energy + Delta-G solvation = -3762.774547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92666 -39.67787 -37.68065 -37.09609 -34.72865 -32.93608 -31.77697 -31.35136 -30.97858 -28.55849 -27.35011 -26.39006 -24.69025 -23.59809 -22.81090 -22.18407 -21.51393 -20.49711 -19.24113 -18.76211 -17.49539 -16.98277 -16.62280 -16.18411 -15.65529 -15.53319 -15.14673 -14.61244 -14.24160 -14.15058 -14.04823 -13.72057 -13.67339 -13.54680 -13.38505 -13.02295 -12.64869 -12.54405 -12.33628 -12.18685 -12.13104 -11.95392 -11.66117 -11.53515 -10.99470 -10.78899 -10.70407 -10.57152 -10.50317 -10.44333 -9.98574 -9.95060 -9.79209 -9.25973 -9.16054 -8.79472 -8.52499 -8.09570 -6.92537 -6.04036 -3.02716 0.06613 0.76902 1.03773 1.39944 1.49025 2.89611 2.99529 3.38406 3.56301 3.60554 3.77585 3.98936 4.24718 4.46080 4.62336 4.66812 4.75196 4.81433 4.94581 5.01087 5.06543 5.10193 5.27064 5.36339 5.40014 5.51001 5.58415 5.66337 5.72238 5.73409 5.73774 5.80019 5.84034 5.90547 5.96032 6.01743 6.06237 6.12883 6.24386 6.37169 6.49032 6.51306 6.77032 6.97385 7.54249 7.87839 8.12617 8.82152 9.29470 10.15584 10.30885 11.44818 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.002925 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.645462 B = 9569.548775 C =11355.687751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.073 4.073 5 C -0.201 4.201 6 S 0.365 5.635 7 N -0.482 5.482 8 C 0.102 3.898 9 C 0.596 3.404 10 O -0.514 6.514 11 N -0.590 5.590 12 C 0.098 3.902 13 C -0.135 4.135 14 C -0.120 4.120 15 C 0.130 3.870 16 H 0.077 0.923 17 C 0.151 3.849 18 N -0.739 5.739 19 C -0.325 4.325 20 H 0.063 0.937 21 C -0.046 4.046 22 N -0.946 5.946 23 Si 1.081 2.919 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.295 1.295 27 C -0.083 4.083 28 C -0.042 4.042 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.022 0.978 42 H 0.366 0.634 43 H 0.254 0.746 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 27.811 -4.086 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 C -0.110 4.110 4 C -0.095 4.095 5 C -0.322 4.322 6 S 0.525 5.475 7 N -0.308 5.308 8 C -0.086 4.086 9 C 0.379 3.621 10 O -0.388 6.388 11 N -0.324 5.324 12 C -0.025 4.025 13 C -0.174 4.174 14 C -0.158 4.158 15 C 0.027 3.973 16 H 0.095 0.905 17 C 0.023 3.977 18 N -0.385 5.385 19 C -0.456 4.456 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.592 5.592 23 Si 0.912 3.088 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.093 4.093 28 C -0.064 4.064 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.040 0.960 42 H 0.199 0.801 43 H 0.065 0.935 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.039 26.537 -3.403 27.665 hybrid contribution -0.873 1.017 -0.604 1.470 sum 6.166 27.554 -4.008 28.518 Atomic orbital electron populations 1.20854 0.90208 1.03314 1.02908 1.19680 0.96926 0.92515 0.99601 1.20966 0.93636 0.97980 0.98447 1.19895 0.93768 0.95202 1.00613 1.24195 1.01368 0.97702 1.08899 1.81423 1.02787 0.95629 1.67626 1.71832 1.23299 1.15731 1.19952 1.21925 0.86546 0.95796 1.04327 1.16757 0.85024 0.82171 0.78176 1.90833 1.16126 1.81921 1.49957 1.48285 1.07146 1.06345 1.70601 1.22649 0.79178 0.99364 1.01333 1.22837 0.99147 0.94597 1.00785 1.22673 0.92541 0.97297 1.03320 1.21916 0.97062 0.77801 1.00507 0.90473 1.20916 0.96363 0.86953 0.93497 1.42200 1.70435 1.05656 1.20237 1.20017 1.32722 0.95461 0.97437 0.91879 1.25758 1.02028 0.93708 1.02861 1.70884 1.43141 1.38249 1.06916 0.83233 0.75525 0.76158 0.73930 1.21040 1.22339 1.22279 1.19534 0.95122 0.89755 1.04923 1.20756 0.90844 0.99349 0.95463 0.90674 0.91254 0.90860 0.84788 0.84811 0.88262 0.91460 0.90875 0.89909 0.89824 0.89885 0.94557 0.96049 0.80089 0.93501 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.98 36.01 0.36 -0.49 16 2 C -0.09 -0.82 5.84 -105.06 -0.61 -1.44 16 3 C -0.09 -0.69 9.63 -39.85 -0.38 -1.07 16 4 C -0.07 -0.60 10.03 -39.93 -0.40 -1.00 16 5 C -0.20 -2.16 6.73 -38.50 -0.26 -2.42 16 6 S 0.37 3.57 23.36 -107.50 -2.51 1.06 16 7 N -0.48 -6.17 7.61 28.25 0.21 -5.95 16 8 C 0.10 1.51 6.77 -81.99 -0.56 0.95 16 9 C 0.60 10.42 7.65 -12.54 -0.10 10.32 16 10 O -0.51 -10.40 13.82 5.26 0.07 -10.32 16 11 N -0.59 -9.75 3.06 -164.29 -0.50 -10.25 16 12 C 0.10 1.30 6.18 -2.53 -0.02 1.28 16 13 C -0.14 -1.61 7.08 -24.58 -0.17 -1.79 16 14 C -0.12 -1.85 6.18 -24.90 -0.15 -2.01 16 15 C 0.13 2.38 2.96 -66.96 -0.20 2.18 16 16 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 17 C 0.15 3.44 5.64 -4.04 -0.02 3.42 16 18 N -0.74 -19.72 5.40 -59.91 -0.32 -20.05 16 19 C -0.33 -9.68 9.99 -15.06 -0.15 -9.83 16 20 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.05 -1.40 5.50 -17.43 -0.10 -1.49 16 22 N -0.95 -29.98 13.70 55.49 0.76 -29.22 16 23 Si 1.08 26.85 29.92 -169.99 -5.09 21.77 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 27 C -0.08 -1.11 6.10 -105.09 -0.64 -1.75 16 28 C -0.04 -0.53 9.17 -39.45 -0.36 -0.89 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.07 0.56 8.07 -51.92 -0.42 0.15 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.10 1.23 5.73 -51.93 -0.30 0.93 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.40 7.78 -51.93 -0.40 0.99 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.04 0.92 6.59 -51.93 -0.34 0.58 16 41 H 0.02 0.50 8.05 -51.93 -0.42 0.08 16 42 H 0.37 9.76 6.41 -40.82 -0.26 9.50 16 43 H 0.25 7.89 6.77 -40.82 -0.28 7.62 16 44 H 0.15 2.10 6.64 -52.49 -0.35 1.75 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -35.30 370.53 -11.33 -46.63 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.78 Total: 6.78 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -3.76 Total: -6.03 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: 0.15 Total: -65.47 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 26.85 SS G_CDS: -5.09 Total: 21.77 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.51 Total: 1.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.30 -11.33 -46.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483941578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.088 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds