Wall clock time and date at job start Sat Apr 11 2020 07:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38901 * 119.47814 * 2 1 4 4 C 1.36812 * 120.30104 * 179.97438 * 3 2 1 5 5 C 1.38691 * 119.62904 * 359.97438 * 4 3 2 6 6 S 1.76254 * 134.18086 * 180.02562 * 5 4 3 7 7 N 1.56004 * 97.56060 * 179.75090 * 6 5 4 8 8 C 1.29683 * 111.74473 * 0.36093 * 7 6 5 9 9 C 1.47379 * 121.83278 * 179.83819 * 8 7 6 10 10 O 1.21615 * 119.99960 * 179.72514 * 9 8 7 11 11 N 1.34780 * 120.00016 * 359.71911 * 9 8 7 12 12 C 1.47430 * 125.64494 * 4.67364 * 11 9 8 13 13 C 1.54911 * 104.82719 * 204.15941 * 12 11 9 14 14 C 1.55151 * 101.58388 * 322.99425 * 13 12 11 15 15 C 1.47018 * 125.64907 * 184.71213 * 11 9 8 16 16 H 1.09005 * 109.88154 * 59.33720 * 15 11 9 17 17 C 1.52995 * 109.88256 * 298.32326 * 15 11 9 18 18 N 1.46499 * 109.47305 * 175.97326 * 17 15 11 19 19 C 1.36936 * 120.00526 * 174.94490 * 18 17 15 20 20 H 1.08000 * 119.99520 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00345 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00033 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47259 * 180.02562 * 23 21 19 25 25 H 1.48494 * 109.47468 * 300.00567 * 23 21 19 26 26 H 1.48501 * 109.46878 * 60.00623 * 23 21 19 27 27 C 1.40672 * 120.67137 * 359.97438 * 5 4 3 28 28 C 1.36336 * 119.47925 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47533 * 270.02269 * 1 2 3 30 30 H 1.09002 * 109.46973 * 30.02848 * 1 2 3 31 31 H 1.09007 * 109.46751 * 150.02159 * 1 2 3 32 32 H 1.08000 * 119.85484 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.18332 * 180.02562 * 4 3 2 34 34 H 1.08997 * 110.36663 * 323.00220 * 12 11 9 35 35 H 1.08999 * 110.36333 * 85.21308 * 12 11 9 36 36 H 1.09000 * 111.00119 * 81.06723 * 13 12 11 37 37 H 1.08996 * 111.00065 * 204.91180 * 13 12 11 38 38 H 1.09005 * 110.71491 * 277.13726 * 14 13 12 39 39 H 1.09002 * 110.72058 * 153.86584 * 14 13 12 40 40 H 1.09002 * 109.47232 * 55.97429 * 17 15 11 41 41 H 1.08997 * 109.47497 * 295.97395 * 17 15 11 42 42 H 0.97003 * 119.99748 * 354.94035 * 18 17 15 43 43 H 0.97002 * 119.99941 * 359.97438 * 22 21 19 44 44 H 1.07990 * 120.02123 * 0.02675 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2092 0.0000 4 6 3.5585 1.2288 0.0005 5 6 4.2614 0.0333 0.0016 6 16 5.9736 -0.3850 0.0031 7 7 5.8060 -1.9360 0.0104 8 6 4.5568 -2.2843 0.0048 9 6 4.1443 -3.6992 0.0063 10 8 2.9629 -3.9881 0.0059 11 7 5.0762 -4.6729 0.0080 12 6 6.5329 -4.4678 0.1062 13 6 7.1554 -5.7299 -0.5414 14 6 6.1729 -6.8363 -0.0749 15 6 4.8086 -6.1153 -0.0885 16 1 4.2808 -6.3331 -1.0170 17 6 3.9680 -6.5696 1.1065 18 7 3.6257 -7.9857 0.9525 19 6 2.9621 -8.6426 1.9542 20 1 2.6907 -8.1165 2.8575 21 6 2.6373 -9.9842 1.8081 22 7 2.9676 -10.6252 0.7070 23 14 1.7327 -10.8803 3.1748 24 1 1.5067 -12.2928 2.7756 25 1 2.5470 -10.8414 4.4159 26 1 0.4255 -10.2195 3.4194 27 6 3.5821 -1.1986 0.0027 28 6 2.1780 -1.1869 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6397 2.1382 0.0004 33 1 4.0881 2.1701 0.0009 34 1 6.8280 -3.5742 -0.4438 35 1 6.8350 -4.3868 1.1503 36 1 7.1636 -5.6476 -1.6283 37 1 8.1592 -5.9112 -0.1573 38 1 6.4212 -7.1730 0.9317 39 1 6.1740 -7.6727 -0.7738 40 1 3.0538 -5.9779 1.1536 41 1 4.5380 -6.4314 2.0252 42 1 3.8691 -8.4580 0.1410 43 1 3.4377 -10.1599 -0.0026 44 1 1.6299 -2.1173 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483941578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:40 Heat of formation + Delta-G solvation = 20.286969 kcal Electronic energy + Delta-G solvation = -27427.610003 eV Core-core repulsion = 23663.874187 eV Total energy + Delta-G solvation = -3763.735816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.99611 -40.74724 -38.84638 -38.22628 -36.78632 -33.79069 -33.44017 -32.74539 -31.85173 -30.28583 -28.06441 -27.49023 -26.51467 -24.95163 -24.23532 -23.49062 -22.42341 -21.70698 -20.53741 -19.75812 -19.36323 -18.31889 -17.86460 -17.20572 -16.93055 -16.54196 -16.36168 -15.86995 -15.74512 -15.38878 -15.30407 -15.17542 -15.09761 -14.81622 -14.44847 -14.30859 -14.00959 -13.71057 -13.26718 -13.16071 -13.04342 -12.85551 -12.83509 -12.71869 -12.64118 -12.55140 -12.05735 -11.90159 -11.83827 -11.79437 -11.71637 -11.37325 -11.09841 -10.93852 -10.82074 -10.01464 -9.89959 -9.20105 -8.90214 -8.47319 -5.41377 -0.87184 -0.04195 0.23230 0.49350 0.55735 1.54441 1.65411 1.66709 1.82772 1.83882 2.53193 2.67093 3.07424 3.25898 3.33523 3.49522 3.59165 3.74563 3.77603 3.87354 3.89480 4.14372 4.16701 4.17590 4.30296 4.31765 4.37638 4.61787 4.65367 4.70148 4.79568 4.80565 4.82904 4.87744 4.93040 4.97087 5.00449 5.07706 5.13658 5.20055 5.23818 5.29820 5.49105 5.52750 5.79679 6.26456 6.43163 6.80871 7.00958 7.89216 8.02197 9.04730 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.002925 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.645462 B = 9569.548775 C =11355.687751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 C -0.081 4.081 4 C -0.063 4.063 5 C -0.216 4.216 6 S 0.448 5.552 7 N -0.493 5.493 8 C 0.069 3.931 9 C 0.587 3.413 10 O -0.559 6.559 11 N -0.593 5.593 12 C 0.097 3.903 13 C -0.118 4.118 14 C -0.116 4.116 15 C 0.137 3.863 16 H 0.060 0.940 17 C 0.160 3.840 18 N -0.746 5.746 19 C -0.342 4.342 20 H 0.058 0.942 21 C -0.097 4.097 22 N -0.968 5.968 23 Si 1.130 2.870 24 H -0.286 1.286 25 H -0.275 1.275 26 H -0.281 1.281 27 C -0.107 4.107 28 C -0.081 4.081 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.005 0.995 41 H 0.016 0.984 42 H 0.364 0.636 43 H 0.245 0.755 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.687 31.286 -3.803 32.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.104 4.104 4 C -0.084 4.084 5 C -0.337 4.337 6 S 0.609 5.391 7 N -0.322 5.322 8 C -0.117 4.117 9 C 0.372 3.628 10 O -0.437 6.437 11 N -0.326 5.326 12 C -0.025 4.025 13 C -0.156 4.156 14 C -0.154 4.154 15 C 0.033 3.967 16 H 0.078 0.922 17 C 0.032 3.968 18 N -0.391 5.391 19 C -0.473 4.473 20 H 0.076 0.924 21 C -0.289 4.289 22 N -0.616 5.616 23 Si 0.954 3.046 24 H -0.211 1.211 25 H -0.201 1.201 26 H -0.208 1.208 27 C -0.117 4.117 28 C -0.104 4.104 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.193 0.807 33 H 0.193 0.807 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.023 0.977 41 H 0.034 0.966 42 H 0.197 0.803 43 H 0.055 0.945 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.636 30.063 -3.126 31.435 hybrid contribution -1.347 0.151 -0.699 1.525 sum 7.290 30.214 -3.825 31.315 Atomic orbital electron populations 1.20927 0.88843 1.04048 1.03522 1.20010 0.98068 0.92305 0.97700 1.21431 0.93847 0.98453 0.96649 1.20461 0.94091 0.95655 0.98189 1.24509 1.02001 0.97660 1.09564 1.81018 1.01130 0.92541 1.64379 1.71434 1.22759 1.18803 1.19212 1.21474 0.87593 0.94311 1.08360 1.17350 0.84599 0.83728 0.77158 1.90793 1.18001 1.83019 1.51902 1.48408 1.08682 1.05179 1.70340 1.22858 0.76995 1.00679 1.01949 1.22849 0.99380 0.91728 1.01602 1.22591 0.91675 0.98269 1.02843 1.21669 0.97980 0.79789 0.97260 0.92196 1.20841 0.95700 0.84696 0.95547 1.42292 1.70246 1.06958 1.19627 1.20329 1.32961 0.96065 0.97915 0.92424 1.27310 1.02426 0.94778 1.04353 1.70989 1.44370 1.38576 1.07617 0.82617 0.75197 0.74836 0.71956 1.21122 1.20073 1.20753 1.19617 0.95400 0.90570 1.06118 1.20667 0.91100 0.99504 0.99107 0.90022 0.88399 0.92240 0.80650 0.80739 0.86900 0.91196 0.89500 0.86774 0.91126 0.89700 0.97663 0.96609 0.80338 0.94488 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.98 71.24 0.71 -0.92 16 2 C -0.08 -1.48 5.84 -20.15 -0.12 -1.60 16 3 C -0.08 -0.99 9.63 22.09 0.21 -0.77 16 4 C -0.06 -0.79 10.03 22.04 0.22 -0.57 16 5 C -0.22 -4.24 6.73 22.97 0.15 -4.08 16 6 S 0.45 7.60 23.36 -56.49 -1.32 6.28 16 7 N -0.49 -12.23 7.61 -64.54 -0.49 -12.72 16 8 C 0.07 2.11 6.77 43.86 0.30 2.41 16 9 C 0.59 22.25 7.65 86.65 0.66 22.92 16 10 O -0.56 -25.33 13.82 -4.08 -0.06 -25.38 16 11 N -0.59 -20.66 3.06 -791.94 -2.43 -23.09 16 12 C 0.10 2.51 6.18 86.85 0.54 3.05 16 13 C -0.12 -2.61 7.08 31.98 0.23 -2.38 16 14 C -0.12 -3.62 6.18 31.78 0.20 -3.43 16 15 C 0.14 5.33 2.96 45.34 0.13 5.47 16 16 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 17 C 0.16 7.83 5.64 86.38 0.49 8.32 16 18 N -0.75 -41.95 5.40 -343.47 -1.85 -43.80 16 19 C -0.34 -21.04 9.99 84.03 0.84 -20.20 16 20 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 21 C -0.10 -5.95 5.50 84.86 0.47 -5.49 16 22 N -0.97 -62.71 13.70 21.65 0.30 -62.41 16 23 Si 1.13 54.50 29.92 68.60 2.05 56.55 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 C -0.11 -2.97 6.10 -20.17 -0.12 -3.09 16 28 C -0.08 -2.22 9.17 22.36 0.21 -2.02 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 0.80 8.08 -2.39 -0.02 0.78 16 31 H 0.06 0.99 8.07 -2.38 -0.02 0.97 16 32 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 34 H 0.11 2.64 5.73 -2.39 -0.01 2.63 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 2.40 7.78 -2.38 -0.02 2.38 16 39 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.01 0.30 6.59 -2.39 -0.02 0.28 16 41 H 0.02 0.79 8.05 -2.39 -0.02 0.77 16 42 H 0.36 20.51 6.41 -92.71 -0.59 19.91 16 43 H 0.24 15.77 6.77 -92.71 -0.63 15.14 16 44 H 0.12 3.84 6.64 -2.92 -0.02 3.82 16 Total: -1.00 -82.47 370.53 1.90 -80.57 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.59 Total: 26.40 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.11 Total: -2.39 kcal Atomic # 7 Polarization: -137.55 SS G_CDS: -4.47 Total: -142.03 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.06 Total: -25.38 kcal Atomic # 14 Polarization: 54.50 SS G_CDS: 2.05 Total: 56.55 kcal Atomic # 16 Polarization: 7.60 SS G_CDS: -1.32 Total: 6.28 kcal Total: -82.47 1.90 -80.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483941578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.855 kcal (2) G-P(sol) polarization free energy of solvation -82.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds