Wall clock time and date at job start Sat Apr 11 2020 07:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.80217 * 2 1 4 4 N 1.46501 * 109.46715 * 56.70981 * 3 2 1 5 5 C 1.36942 * 119.99554 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00169 * 359.97438 * 5 4 3 7 7 C 1.38815 * 119.99893 * 180.02562 * 5 4 3 8 8 N 1.31620 * 119.99889 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99792 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47275 * 60.00017 * 9 7 5 11 11 H 1.48502 * 109.46900 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47277 * 299.99726 * 9 7 5 13 13 C 1.54620 * 110.73681 * 236.70788 * 2 1 3 14 14 C 1.53997 * 105.04720 * 263.51210 * 13 2 1 15 15 N 1.47489 * 107.08248 * 1.30826 * 14 13 2 16 16 C 1.34783 * 127.03175 * 154.51731 * 15 14 13 17 17 O 1.21608 * 119.99384 * 185.29258 * 16 15 14 18 18 C 1.47389 * 119.99776 * 5.29278 * 16 15 14 19 19 C 1.38870 * 120.02419 * 34.94570 * 18 16 15 20 20 C 1.38231 * 120.46414 * 179.97438 * 19 18 16 21 21 C 1.37956 * 120.27374 * 0.24933 * 20 19 18 22 22 C 1.39187 * 120.45028 * 359.49619 * 21 20 19 23 23 S 1.76148 * 131.63600 * 180.19300 * 22 21 20 24 24 C 1.70684 * 90.71218 * 180.28331 * 23 22 21 25 25 N 1.28151 * 111.37836 * 359.97438 * 24 23 22 26 26 C 1.33648 * 118.01914 * 359.97438 * 25 24 23 27 27 C 1.48111 * 105.93191 * 334.77646 * 15 14 13 28 28 H 1.09002 * 109.47357 * 183.29336 * 1 2 3 29 29 H 1.08997 * 109.46854 * 303.28714 * 1 2 3 30 30 H 1.08996 * 109.47305 * 63.28787 * 1 2 3 31 31 H 1.08994 * 109.47096 * 176.71068 * 3 2 1 32 32 H 1.09005 * 109.47111 * 296.71040 * 3 2 1 33 33 H 0.96990 * 120.00331 * 359.97438 * 4 3 2 34 34 H 0.96999 * 119.99506 * 179.97438 * 8 7 5 35 35 H 1.09004 * 110.32670 * 144.61869 * 13 2 1 36 36 H 1.09006 * 110.41335 * 22.45006 * 13 2 1 37 37 H 1.09000 * 109.91861 * 241.94695 * 14 13 2 38 38 H 1.09005 * 110.07367 * 120.75422 * 14 13 2 39 39 H 1.08005 * 119.76570 * 359.97438 * 19 18 16 40 40 H 1.08000 * 119.86467 * 179.97438 * 20 19 18 41 41 H 1.08007 * 119.77372 * 179.74088 * 21 20 19 42 42 H 1.07998 * 124.31333 * 179.97438 * 24 23 22 43 43 H 1.08997 * 110.66261 * 157.51122 * 27 15 14 44 44 H 1.08999 * 110.66508 * 280.62596 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4302 0.0000 4 7 1.5381 2.1559 1.1546 5 6 1.8874 3.4634 1.3635 6 1 2.5579 3.9595 0.6773 7 6 1.3806 4.1509 2.4578 8 7 0.5640 3.5462 3.2943 9 14 1.8577 5.9343 2.7430 10 1 1.4348 6.7523 1.5781 11 1 1.1880 6.4356 3.9700 12 1 3.3302 6.0324 2.9083 13 6 2.0775 -0.7937 -1.2087 14 6 2.3762 -2.2015 -0.6604 15 7 1.9871 -2.2039 0.7622 16 6 1.6220 -3.2697 1.5021 17 8 1.2323 -3.1128 2.6433 18 6 1.6952 -4.6252 0.9280 19 6 2.7126 -4.9498 0.0403 20 6 2.7902 -6.2185 -0.5032 21 6 1.8529 -7.1752 -0.1726 22 6 0.8259 -6.8783 0.7187 23 16 -0.5015 -7.8542 1.3419 24 6 -1.0640 -6.5356 2.2684 25 7 -0.3232 -5.5023 2.1082 26 6 0.7246 -5.6025 1.2846 27 6 2.0734 -0.7946 1.2097 28 1 -0.3634 -1.0260 0.0590 29 1 -0.3633 0.5640 0.8590 30 1 -0.3634 0.4619 -0.9179 31 1 3.1615 1.4055 0.0590 32 1 1.7706 1.9340 -0.9180 33 1 0.9357 1.7105 1.7706 34 1 0.2102 4.0265 4.0591 35 1 2.9910 -0.3314 -1.5829 36 1 1.3291 -0.8463 -1.9995 37 1 3.4402 -2.4186 -0.7546 38 1 1.7959 -2.9461 -1.2053 39 1 3.4484 -4.2059 -0.2274 40 1 3.5853 -6.4603 -1.1930 41 1 1.9189 -8.1627 -0.6052 42 1 -1.9335 -6.5680 2.9082 43 1 1.4490 -0.6311 2.0880 44 1 3.1077 -0.5189 1.4151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484094903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:47 Heat of formation + Delta-G solvation = 24.586282 kcal Electronic energy + Delta-G solvation = -27550.083608 eV Core-core repulsion = 23786.534224 eV Total energy + Delta-G solvation = -3763.549384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94388 -40.86798 -39.08710 -37.88162 -36.47656 -34.43072 -32.66608 -31.88004 -30.98992 -30.42988 -28.05161 -27.37140 -26.02128 -25.55594 -24.38999 -23.31591 -22.56306 -21.18577 -20.20440 -19.44907 -18.80318 -18.20903 -17.51815 -17.25295 -16.78043 -16.55001 -16.22375 -16.03006 -15.86638 -15.51460 -15.37813 -15.18652 -14.77213 -14.72296 -14.42652 -13.98822 -13.74096 -13.54538 -13.38746 -13.09865 -13.02478 -13.01478 -12.81896 -12.75429 -12.55224 -12.26897 -12.21325 -12.04978 -11.68498 -11.48694 -11.45055 -11.20566 -11.04070 -10.91356 -10.55871 -9.84357 -9.72206 -9.15696 -8.97601 -7.92986 -5.22075 -0.82801 -0.17535 0.25345 0.60959 1.34523 1.46112 1.50093 1.56149 1.63893 1.86534 2.56878 2.63805 2.99743 3.26255 3.40397 3.57302 3.62050 3.78421 3.85864 3.95432 4.13908 4.17425 4.19560 4.28733 4.31027 4.37129 4.45617 4.56677 4.65027 4.70597 4.77414 4.86119 4.95068 4.99317 5.03827 5.06188 5.08325 5.11736 5.20137 5.29537 5.35747 5.45018 5.51349 5.62076 6.28045 6.47257 6.63402 7.06311 7.34109 8.12110 8.33277 9.30744 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.002429 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.262638 B =11524.092532 C =12337.069378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.072 4.072 3 C 0.168 3.832 4 N -0.747 5.747 5 C -0.240 4.240 6 H 0.082 0.918 7 C -0.082 4.082 8 N -0.975 5.975 9 Si 0.976 3.024 10 H -0.275 1.275 11 H -0.300 1.300 12 H -0.276 1.276 13 C -0.113 4.113 14 C 0.096 3.904 15 N -0.613 5.613 16 C 0.564 3.436 17 O -0.577 6.577 18 C -0.108 4.108 19 C -0.061 4.061 20 C -0.095 4.095 21 C -0.040 4.040 22 C -0.211 4.211 23 S 0.159 5.841 24 C 0.062 3.938 25 N -0.512 5.512 26 C 0.092 3.908 27 C 0.124 3.876 28 H 0.044 0.956 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.371 0.629 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.166 0.834 40 H 0.191 0.809 41 H 0.173 0.827 42 H 0.228 0.772 43 H 0.037 0.963 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 -29.501 -16.195 33.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C 0.042 3.958 4 N -0.390 5.390 5 C -0.372 4.372 6 H 0.100 0.900 7 C -0.274 4.274 8 N -0.626 5.626 9 Si 0.805 3.195 10 H -0.201 1.201 11 H -0.227 1.227 12 H -0.202 1.202 13 C -0.151 4.151 14 C -0.025 4.025 15 N -0.346 5.346 16 C 0.355 3.645 17 O -0.457 6.457 18 C -0.115 4.115 19 C -0.081 4.081 20 C -0.116 4.116 21 C -0.063 4.063 22 C -0.330 4.330 23 S 0.414 5.586 24 C -0.241 4.241 25 N -0.224 5.224 26 C -0.031 4.031 27 C 0.001 3.999 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.204 0.796 34 H 0.057 0.943 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.183 0.817 40 H 0.208 0.792 41 H 0.190 0.810 42 H 0.244 0.756 43 H 0.056 0.944 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.943 -29.880 -15.369 33.831 hybrid contribution -0.184 2.116 1.489 2.594 sum 3.758 -27.764 -13.879 31.266 Atomic orbital electron populations 1.21584 0.94643 0.99980 1.01517 1.21671 0.95554 0.94569 0.95573 1.20827 0.95948 0.89218 0.89855 1.42689 1.56680 1.10580 1.29020 1.19653 1.21801 0.89097 1.06659 0.90050 1.25636 1.00844 1.02742 0.98165 1.69856 1.38018 1.37979 1.16736 0.85171 0.77666 0.79964 0.76720 1.20078 1.22698 1.20225 1.22615 1.03415 0.93101 0.95984 1.22621 1.02123 0.98847 0.78918 1.48776 1.66192 1.06378 1.13241 1.18289 0.76719 0.84649 0.84874 1.90816 1.47759 1.86406 1.20707 1.19456 0.98462 0.91375 1.02170 1.21769 0.95214 0.99293 0.91859 1.21610 0.99409 0.90825 0.99789 1.21066 0.90338 1.01849 0.93005 1.24269 1.04745 0.96851 1.07131 1.83586 1.19737 1.14450 1.40838 1.28849 1.02716 0.90699 1.01809 1.65920 1.06260 1.31759 1.18505 1.19023 0.94484 0.93467 0.96090 1.22273 1.00496 0.79832 0.97260 0.93724 0.95476 0.91141 0.94947 0.94870 0.79630 0.94258 0.87658 0.88614 0.87701 0.88926 0.81671 0.79187 0.80991 0.75551 0.94432 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 8.31 71.98 0.60 -3.67 16 2 C -0.07 -2.32 0.65 -51.09 -0.03 -2.35 16 3 C 0.17 6.48 5.11 86.38 0.44 6.92 16 4 N -0.75 -38.88 5.16 -343.45 -1.77 -40.65 16 5 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 6 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 7 C -0.08 -4.89 5.50 84.86 0.47 -4.43 16 8 N -0.97 -63.07 13.06 21.65 0.28 -62.79 16 9 Si 0.98 47.59 29.55 68.60 2.03 49.62 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C -0.11 -2.25 6.09 31.48 0.19 -2.05 16 14 C 0.10 1.75 5.23 86.53 0.45 2.20 16 15 N -0.61 -18.62 3.19 -813.99 -2.60 -21.21 16 16 C 0.56 20.35 7.52 86.65 0.65 21.00 16 17 O -0.58 -27.63 16.64 -4.06 -0.07 -27.70 16 18 C -0.11 -2.95 5.53 -19.71 -0.11 -3.06 16 19 C -0.06 -0.94 8.12 22.42 0.18 -0.76 16 20 C -0.10 -0.82 10.02 22.20 0.22 -0.60 16 21 C -0.04 -0.44 10.05 22.43 0.23 -0.21 16 22 C -0.21 -4.01 6.55 22.91 0.15 -3.86 16 23 S 0.16 2.33 23.18 -56.49 -1.31 1.02 16 24 C 0.06 1.30 12.12 130.78 1.58 2.89 16 25 N -0.51 -16.23 9.98 -194.19 -1.94 -18.17 16 26 C 0.09 2.60 6.69 40.28 0.27 2.87 16 27 C 0.12 4.53 5.68 86.61 0.49 5.02 16 28 H 0.04 1.55 8.07 -2.39 -0.02 1.53 16 29 H 0.03 1.18 6.69 -2.39 -0.02 1.16 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.03 1.20 8.10 -2.39 -0.02 1.18 16 32 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.37 21.36 6.21 -92.72 -0.58 20.79 16 34 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.10 1.66 7.85 -2.38 -0.02 1.64 16 36 H 0.10 1.61 7.87 -2.38 -0.02 1.59 16 37 H 0.11 1.19 7.02 -2.39 -0.02 1.17 16 38 H 0.09 1.37 7.18 -2.38 -0.02 1.35 16 39 H 0.17 1.72 5.67 -2.91 -0.02 1.70 16 40 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 41 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.23 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.04 1.75 7.71 -2.39 -0.02 1.73 16 44 H 0.08 2.72 8.01 -2.39 -0.02 2.70 16 Total: -1.00 -90.24 372.18 1.72 -88.53 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.46 Total: 24.26 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 6.63 Total: 7.10 kcal Atomic # 7 Polarization: -136.80 SS G_CDS: -6.02 Total: -142.82 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.07 Total: -27.70 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.31 Total: 1.02 kcal Total: -90.24 1.72 -88.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484094903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.112 kcal (2) G-P(sol) polarization free energy of solvation -90.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds