Wall clock time and date at job start Sat Apr 11 2020 07:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.80311 * 2 1 4 4 N 1.46499 * 109.46959 * 56.71176 * 3 2 1 5 5 C 1.36940 * 119.99762 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00330 * 359.97438 * 5 4 3 7 7 C 1.38810 * 119.99652 * 180.02562 * 5 4 3 8 8 N 1.31626 * 120.00257 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99890 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47027 * 90.00116 * 9 7 5 11 11 H 1.48507 * 109.46956 * 209.99912 * 9 7 5 12 12 H 1.48498 * 109.47226 * 329.99615 * 9 7 5 13 13 C 1.54619 * 110.73703 * 236.71027 * 2 1 3 14 14 C 1.53997 * 105.04429 * 263.51305 * 13 2 1 15 15 N 1.47482 * 107.08865 * 1.30178 * 14 13 2 16 16 C 1.34773 * 127.03489 * 154.51394 * 15 14 13 17 17 O 1.21623 * 119.99874 * 180.02562 * 16 15 14 18 18 C 1.47382 * 120.00126 * 359.75786 * 16 15 14 19 19 N 1.29682 * 121.82603 * 359.97438 * 18 16 15 20 20 S 1.56007 * 111.74119 * 179.87524 * 19 18 16 21 21 C 1.76263 * 97.55897 * 0.33938 * 20 19 18 22 22 C 1.38693 * 134.18233 * 179.78943 * 21 20 19 23 23 C 1.36804 * 119.62685 * 180.02562 * 22 21 20 24 24 C 1.38905 * 120.30674 * 0.02562 * 23 22 21 25 25 C 1.36329 * 121.03477 * 359.93513 * 24 23 22 26 26 C 1.40408 * 119.96269 * 0.08068 * 25 24 23 27 27 C 1.48118 * 105.93085 * 334.78523 * 15 14 13 28 28 H 1.09000 * 109.47269 * 183.29489 * 1 2 3 29 29 H 1.09001 * 109.46636 * 303.29054 * 1 2 3 30 30 H 1.08996 * 109.47281 * 63.28617 * 1 2 3 31 31 H 1.08997 * 109.47568 * 176.71183 * 3 2 1 32 32 H 1.09005 * 109.47065 * 296.71675 * 3 2 1 33 33 H 0.96997 * 120.00094 * 359.97438 * 4 3 2 34 34 H 0.96997 * 119.99812 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.32901 * 144.61476 * 13 2 1 36 36 H 1.09006 * 110.41318 * 22.45130 * 13 2 1 37 37 H 1.09004 * 109.91203 * 241.94050 * 14 13 2 38 38 H 1.08999 * 109.91281 * 120.66715 * 14 13 2 39 39 H 1.08004 * 120.18638 * 0.02562 * 22 21 20 40 40 H 1.07999 * 119.84937 * 180.02562 * 23 22 21 41 41 H 1.08003 * 119.48134 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.01780 * 180.02562 * 25 24 23 43 43 H 1.08991 * 110.66887 * 157.50478 * 27 15 14 44 44 H 1.09005 * 110.65962 * 280.62283 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4303 0.0000 4 7 1.5382 2.1560 1.1546 5 6 1.8875 3.4635 1.3635 6 1 2.5579 3.9595 0.6773 7 6 1.3808 4.1509 2.4577 8 7 0.5641 3.5462 3.2943 9 14 1.8579 5.9343 2.7431 10 1 0.8899 6.8225 2.0508 11 1 1.8416 6.2240 4.1996 12 1 3.2215 6.1739 2.2060 13 6 2.0775 -0.7937 -1.2087 14 6 2.3762 -2.2014 -0.6604 15 7 1.9872 -2.2039 0.7622 16 6 1.6221 -3.2697 1.5020 17 8 1.3242 -3.1243 2.6722 18 6 1.5782 -4.6104 0.8915 19 7 1.8831 -4.8050 -0.3539 20 16 1.7597 -6.3087 -0.7508 21 6 1.2342 -6.9199 0.8168 22 6 0.9026 -8.1759 1.3028 23 6 0.5223 -8.3166 2.6094 24 6 0.4673 -7.2096 3.4466 25 6 0.7898 -5.9662 2.9898 26 6 1.1834 -5.7903 1.6536 27 6 2.0734 -0.7946 1.2097 28 1 -0.3634 -1.0260 0.0591 29 1 -0.3632 0.5641 0.8591 30 1 -0.3633 0.4619 -0.9179 31 1 3.1615 1.4056 0.0589 32 1 1.7705 1.9340 -0.9180 33 1 0.9358 1.7106 1.7707 34 1 0.2103 4.0265 4.0592 35 1 2.9909 -0.3314 -1.5830 36 1 1.3291 -0.8462 -1.9996 37 1 3.4402 -2.4185 -0.7548 38 1 1.7934 -2.9436 -1.2060 39 1 0.9442 -9.0379 0.6534 40 1 0.2637 -9.2930 2.9917 41 1 0.1649 -7.3360 4.4757 42 1 0.7417 -5.1169 3.6552 43 1 1.4491 -0.6310 2.0880 44 1 3.1078 -0.5189 1.4150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500350021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:20 Heat of formation + Delta-G solvation = 45.006913 kcal Electronic energy + Delta-G solvation = -27393.358511 eV Core-core repulsion = 23630.694632 eV Total energy + Delta-G solvation = -3762.663879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88871 -39.66703 -37.96509 -37.05789 -34.77674 -32.64979 -31.43838 -30.93659 -30.40495 -29.15865 -27.40027 -26.06538 -24.94085 -23.49900 -23.36559 -22.26495 -21.90791 -19.52208 -19.00116 -18.77948 -17.49150 -16.89695 -16.45865 -16.08605 -15.69913 -15.47587 -15.12439 -14.81928 -14.47609 -14.27819 -14.12548 -13.74656 -13.51785 -13.35488 -12.91870 -12.64851 -12.56899 -12.43376 -12.31091 -12.08874 -12.01806 -11.73371 -11.54452 -11.05690 -11.00105 -10.96874 -10.80073 -10.45279 -10.41312 -10.26771 -10.13812 -9.92962 -9.87536 -9.59744 -9.41213 -8.85328 -8.60615 -8.17543 -6.89010 -5.72978 -3.01865 0.04336 0.75882 1.00452 1.36418 1.46708 2.89822 2.97848 3.38536 3.45945 3.50885 3.52838 3.99532 4.23313 4.52116 4.60029 4.64956 4.81238 4.87333 4.93337 5.07027 5.08642 5.13884 5.42272 5.49715 5.55251 5.61678 5.64204 5.71862 5.79538 5.85969 5.93344 5.99678 6.07351 6.08746 6.15097 6.15828 6.17127 6.32763 6.42161 6.45616 6.55765 6.69057 6.79074 6.87744 7.54528 7.72894 8.07005 8.45577 9.56849 10.14196 10.48755 11.49726 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002451 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.185165 B =11419.984121 C =12473.454846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.125 4.125 14 C 0.103 3.897 15 N -0.597 5.597 16 C 0.600 3.400 17 O -0.525 6.525 18 C 0.101 3.899 19 N -0.481 5.481 20 S 0.369 5.631 21 C -0.197 4.197 22 C -0.077 4.077 23 C -0.088 4.088 24 C -0.120 4.120 25 C -0.040 4.040 26 C -0.088 4.088 27 C 0.120 3.880 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.022 0.978 32 H 0.024 0.976 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.149 0.851 43 H 0.092 0.908 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 -27.410 -8.154 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.164 4.164 14 C -0.020 4.020 15 N -0.329 5.329 16 C 0.383 3.617 17 O -0.400 6.400 18 C -0.087 4.087 19 N -0.307 5.307 20 S 0.529 5.471 21 C -0.318 4.318 22 C -0.099 4.099 23 C -0.111 4.111 24 C -0.140 4.140 25 C -0.062 4.062 26 C -0.099 4.099 27 C -0.001 4.001 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.167 0.833 43 H 0.110 0.890 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.807 -27.139 -9.722 28.884 hybrid contribution -0.347 1.068 2.021 2.312 sum 1.459 -26.071 -7.701 27.224 Atomic orbital electron populations 1.21702 0.93454 1.00579 1.02901 1.21806 0.96622 0.96005 0.93565 1.20626 0.95644 0.87778 0.91818 1.42416 1.56740 1.10885 1.27563 1.19205 1.22872 0.87929 1.07075 0.91220 1.24739 1.00084 0.98291 0.97835 1.69661 1.36087 1.36227 1.16055 0.86201 0.77893 0.85129 0.77015 1.21792 1.21813 1.20818 1.22632 1.01931 0.93946 0.97890 1.22333 1.00357 0.98319 0.81007 1.48617 1.64413 1.07697 1.12205 1.16690 0.78298 0.81447 0.85230 1.90815 1.49642 1.84294 1.15291 1.21928 1.02938 0.95675 0.88175 1.71799 1.21069 1.19404 1.18410 1.81467 1.60753 0.94285 1.10618 1.24251 1.07707 0.98423 1.01406 1.19929 0.99851 0.94028 0.96072 1.21091 0.97587 0.99315 0.93132 1.20947 1.00241 0.92117 1.00651 1.20898 0.93956 0.98602 0.92724 1.19589 1.04171 0.89974 0.96130 1.22614 1.02045 0.77039 0.98398 0.93828 0.91065 0.92659 0.96045 0.95820 0.78017 0.93497 0.90278 0.90613 0.91674 0.89026 0.84864 0.84776 0.84770 0.83289 0.88968 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.31 37.16 0.31 -1.86 16 2 C -0.08 -1.28 0.65 -152.82 -0.10 -1.38 16 3 C 0.17 3.33 5.11 -4.04 -0.02 3.31 16 4 N -0.73 -18.28 5.16 -59.91 -0.31 -18.59 16 5 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 9 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C -0.13 -1.60 6.09 -25.36 -0.15 -1.75 16 14 C 0.10 1.33 6.14 -2.98 -0.02 1.31 16 15 N -0.60 -9.28 3.19 -171.26 -0.55 -9.83 16 16 C 0.60 9.86 7.88 -12.54 -0.10 9.76 16 17 O -0.52 -9.89 15.22 5.26 0.08 -9.81 16 18 C 0.10 1.41 6.78 -81.99 -0.56 0.85 16 19 N -0.48 -5.91 7.79 28.24 0.22 -5.69 16 20 S 0.37 3.44 23.36 -107.50 -2.51 0.93 16 21 C -0.20 -1.99 6.73 -38.50 -0.26 -2.25 16 22 C -0.08 -0.58 10.03 -39.93 -0.40 -0.98 16 23 C -0.09 -0.60 10.00 -39.85 -0.40 -1.00 16 24 C -0.12 -1.00 9.93 -40.02 -0.40 -1.39 16 25 C -0.04 -0.45 9.57 -39.45 -0.38 -0.83 16 26 C -0.09 -1.11 6.10 -105.09 -0.64 -1.75 16 27 C 0.12 2.07 5.65 -2.31 -0.01 2.06 16 28 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.07 1.39 6.69 -51.93 -0.35 1.05 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.02 0.43 8.10 -51.93 -0.42 0.00 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.39 10.18 6.21 -40.82 -0.25 9.93 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 36 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.14 5.98 -51.93 -0.31 0.83 16 39 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.15 1.87 6.64 -52.48 -0.35 1.52 16 43 H 0.09 1.83 7.75 -51.93 -0.40 1.42 16 44 H 0.08 1.37 8.01 -51.93 -0.42 0.95 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -32.83 371.00 -10.96 -43.79 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.82 Total: 6.98 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -3.37 Total: -3.24 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.09 Total: -61.81 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -2.51 Total: 0.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.83 -10.96 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500350021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.800 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds