Wall clock time and date at job start Sat Apr 11 2020 07:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.80311 * 2 1 4 4 N 1.46499 * 109.46959 * 56.71176 * 3 2 1 5 5 C 1.36940 * 119.99762 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00330 * 359.97438 * 5 4 3 7 7 C 1.38810 * 119.99652 * 180.02562 * 5 4 3 8 8 N 1.31626 * 120.00257 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99890 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47027 * 90.00116 * 9 7 5 11 11 H 1.48507 * 109.46956 * 209.99912 * 9 7 5 12 12 H 1.48498 * 109.47226 * 329.99615 * 9 7 5 13 13 C 1.54619 * 110.73703 * 236.71027 * 2 1 3 14 14 C 1.53997 * 105.04429 * 263.51305 * 13 2 1 15 15 N 1.47482 * 107.08865 * 1.30178 * 14 13 2 16 16 C 1.34773 * 127.03489 * 154.51394 * 15 14 13 17 17 O 1.21623 * 119.99874 * 180.02562 * 16 15 14 18 18 C 1.47382 * 120.00126 * 359.75786 * 16 15 14 19 19 N 1.29682 * 121.82603 * 359.97438 * 18 16 15 20 20 S 1.56007 * 111.74119 * 179.87524 * 19 18 16 21 21 C 1.76263 * 97.55897 * 0.33938 * 20 19 18 22 22 C 1.38693 * 134.18233 * 179.78943 * 21 20 19 23 23 C 1.36804 * 119.62685 * 180.02562 * 22 21 20 24 24 C 1.38905 * 120.30674 * 0.02562 * 23 22 21 25 25 C 1.36329 * 121.03477 * 359.93513 * 24 23 22 26 26 C 1.40408 * 119.96269 * 0.08068 * 25 24 23 27 27 C 1.48118 * 105.93085 * 334.78523 * 15 14 13 28 28 H 1.09000 * 109.47269 * 183.29489 * 1 2 3 29 29 H 1.09001 * 109.46636 * 303.29054 * 1 2 3 30 30 H 1.08996 * 109.47281 * 63.28617 * 1 2 3 31 31 H 1.08997 * 109.47568 * 176.71183 * 3 2 1 32 32 H 1.09005 * 109.47065 * 296.71675 * 3 2 1 33 33 H 0.96997 * 120.00094 * 359.97438 * 4 3 2 34 34 H 0.96997 * 119.99812 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.32901 * 144.61476 * 13 2 1 36 36 H 1.09006 * 110.41318 * 22.45130 * 13 2 1 37 37 H 1.09004 * 109.91203 * 241.94050 * 14 13 2 38 38 H 1.08999 * 109.91281 * 120.66715 * 14 13 2 39 39 H 1.08004 * 120.18638 * 0.02562 * 22 21 20 40 40 H 1.07999 * 119.84937 * 180.02562 * 23 22 21 41 41 H 1.08003 * 119.48134 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.01780 * 180.02562 * 25 24 23 43 43 H 1.08991 * 110.66887 * 157.50478 * 27 15 14 44 44 H 1.09005 * 110.65962 * 280.62283 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4303 0.0000 4 7 1.5382 2.1560 1.1546 5 6 1.8875 3.4635 1.3635 6 1 2.5579 3.9595 0.6773 7 6 1.3808 4.1509 2.4577 8 7 0.5641 3.5462 3.2943 9 14 1.8579 5.9343 2.7431 10 1 0.8899 6.8225 2.0508 11 1 1.8416 6.2240 4.1996 12 1 3.2215 6.1739 2.2060 13 6 2.0775 -0.7937 -1.2087 14 6 2.3762 -2.2014 -0.6604 15 7 1.9872 -2.2039 0.7622 16 6 1.6221 -3.2697 1.5020 17 8 1.3242 -3.1243 2.6722 18 6 1.5782 -4.6104 0.8915 19 7 1.8831 -4.8050 -0.3539 20 16 1.7597 -6.3087 -0.7508 21 6 1.2342 -6.9199 0.8168 22 6 0.9026 -8.1759 1.3028 23 6 0.5223 -8.3166 2.6094 24 6 0.4673 -7.2096 3.4466 25 6 0.7898 -5.9662 2.9898 26 6 1.1834 -5.7903 1.6536 27 6 2.0734 -0.7946 1.2097 28 1 -0.3634 -1.0260 0.0591 29 1 -0.3632 0.5641 0.8591 30 1 -0.3633 0.4619 -0.9179 31 1 3.1615 1.4056 0.0589 32 1 1.7705 1.9340 -0.9180 33 1 0.9358 1.7106 1.7707 34 1 0.2103 4.0265 4.0592 35 1 2.9909 -0.3314 -1.5830 36 1 1.3291 -0.8462 -1.9996 37 1 3.4402 -2.4185 -0.7548 38 1 1.7934 -2.9436 -1.2060 39 1 0.9442 -9.0379 0.6534 40 1 0.2637 -9.2930 2.9917 41 1 0.1649 -7.3360 4.4757 42 1 0.7417 -5.1169 3.6552 43 1 1.4491 -0.6310 2.0880 44 1 3.1078 -0.5189 1.4150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500350021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:19 Heat of formation + Delta-G solvation = 25.065426 kcal Electronic energy + Delta-G solvation = -27394.223239 eV Core-core repulsion = 23630.694632 eV Total energy + Delta-G solvation = -3763.528607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.89815 -40.69936 -39.17897 -37.97370 -36.49488 -34.34325 -32.25909 -32.11752 -31.61993 -30.48358 -28.64895 -27.65625 -26.30490 -24.98760 -24.08168 -23.51030 -23.01173 -20.64666 -20.20011 -19.82360 -19.16704 -18.15433 -17.40830 -17.26484 -16.80187 -16.60989 -16.23225 -16.01900 -15.69859 -15.51104 -15.36704 -15.09052 -14.89364 -14.68062 -14.45823 -13.99975 -13.64400 -13.54115 -13.37451 -13.11830 -13.07873 -13.01054 -12.81598 -12.71812 -12.69529 -12.24358 -12.14819 -11.99768 -11.75022 -11.74752 -11.52684 -11.37198 -11.05165 -10.92359 -10.89079 -10.12256 -9.84669 -8.97637 -8.91564 -7.93140 -5.21887 -0.81814 0.02528 0.26365 0.53647 0.60223 1.46891 1.49012 1.57347 1.74634 1.89108 2.56732 2.63115 3.12954 3.29637 3.40363 3.56335 3.60009 3.81389 3.82603 4.05206 4.15305 4.27659 4.30283 4.31323 4.34945 4.38814 4.50053 4.62336 4.66204 4.73195 4.78109 4.89776 4.93449 4.95077 5.01711 5.03960 5.09166 5.13225 5.25400 5.30906 5.35229 5.43145 5.47281 5.51594 5.82293 6.28362 6.34546 6.84489 7.34833 8.11467 8.33666 9.30601 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002451 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.185165 B =11419.984121 C =12473.454846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.071 4.071 3 C 0.169 3.831 4 N -0.744 5.744 5 C -0.240 4.240 6 H 0.079 0.921 7 C -0.079 4.079 8 N -0.972 5.972 9 Si 0.974 3.026 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.268 1.268 13 C -0.113 4.113 14 C 0.106 3.894 15 N -0.599 5.599 16 C 0.592 3.408 17 O -0.567 6.567 18 C 0.070 3.930 19 N -0.494 5.494 20 S 0.441 5.559 21 C -0.212 4.212 22 C -0.070 4.070 23 C -0.080 4.080 24 C -0.111 4.111 25 C -0.076 4.076 26 C -0.114 4.114 27 C 0.124 3.876 28 H 0.048 0.952 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.034 0.966 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.171 0.829 40 H 0.176 0.824 41 H 0.156 0.844 42 H 0.121 0.879 43 H 0.053 0.947 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -30.285 -10.860 32.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.072 4.072 3 C 0.042 3.958 4 N -0.388 5.388 5 C -0.372 4.372 6 H 0.097 0.903 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.803 3.197 10 H -0.214 1.214 11 H -0.226 1.226 12 H -0.192 1.192 13 C -0.152 4.152 14 C -0.016 4.016 15 N -0.330 5.330 16 C 0.377 3.623 17 O -0.445 6.445 18 C -0.116 4.116 19 N -0.322 5.322 20 S 0.602 5.398 21 C -0.333 4.333 22 C -0.092 4.092 23 C -0.103 4.103 24 C -0.130 4.130 25 C -0.098 4.098 26 C -0.124 4.124 27 C 0.002 3.998 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.188 0.812 40 H 0.193 0.807 41 H 0.174 0.826 42 H 0.139 0.861 43 H 0.071 0.929 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.602 -30.031 -12.497 32.631 hybrid contribution -0.574 1.752 2.792 3.346 sum 2.027 -28.279 -9.705 29.966 Atomic orbital electron populations 1.21595 0.93944 1.00339 1.01870 1.21667 0.96077 0.94430 0.95062 1.20797 0.95798 0.89161 0.90042 1.42651 1.56681 1.10528 1.28915 1.19657 1.21818 0.89072 1.06647 0.90274 1.25592 1.00849 1.02577 0.98125 1.69843 1.37954 1.37799 1.16717 0.85128 0.78154 0.80136 0.76267 1.21397 1.22574 1.19236 1.22629 1.03181 0.92939 0.96416 1.22480 1.01290 0.98616 0.79205 1.48677 1.64348 1.06659 1.13358 1.17218 0.77469 0.82683 0.84944 1.90777 1.51411 1.85212 1.17142 1.21536 1.06345 0.94652 0.89078 1.71436 1.20617 1.22346 1.17809 1.81089 1.58113 0.91627 1.08976 1.24541 1.08447 0.98796 1.01480 1.20476 0.97910 0.93934 0.96872 1.21570 0.95842 1.00294 0.92589 1.21285 0.98328 0.91336 1.02035 1.20856 0.96951 0.99363 0.92630 1.19690 1.05358 0.90418 0.96920 1.22368 1.00843 0.78925 0.97670 0.93307 0.94768 0.91171 0.95335 0.94837 0.79391 0.94178 0.88369 0.88534 0.90361 0.88083 0.81157 0.80690 0.82635 0.86092 0.92869 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.14 8.31 71.98 0.60 -3.54 16 2 C -0.07 -2.33 0.65 -51.09 -0.03 -2.36 16 3 C 0.17 6.61 5.11 86.38 0.44 7.05 16 4 N -0.74 -38.34 5.16 -343.45 -1.77 -40.11 16 5 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 6 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 8 N -0.97 -61.68 13.06 21.65 0.28 -61.39 16 9 Si 0.97 47.24 29.55 68.60 2.03 49.27 16 10 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 C -0.11 -2.65 6.09 31.48 0.19 -2.46 16 14 C 0.11 2.60 6.14 86.53 0.53 3.13 16 15 N -0.60 -19.39 3.19 -814.01 -2.60 -21.99 16 16 C 0.59 20.87 7.88 86.65 0.68 21.56 16 17 O -0.57 -23.77 15.22 -4.10 -0.06 -23.83 16 18 C 0.07 2.02 6.78 43.86 0.30 2.32 16 19 N -0.49 -11.63 7.79 -64.55 -0.50 -12.13 16 20 S 0.44 7.12 23.36 -56.49 -1.32 5.80 16 21 C -0.21 -3.85 6.73 22.97 0.15 -3.70 16 22 C -0.07 -0.79 10.03 22.04 0.22 -0.57 16 23 C -0.08 -0.80 10.00 22.09 0.22 -0.58 16 24 C -0.11 -1.70 9.93 21.98 0.22 -1.48 16 25 C -0.08 -1.83 9.57 22.35 0.21 -1.62 16 26 C -0.11 -2.91 6.10 -20.17 -0.12 -3.04 16 27 C 0.12 4.55 5.65 86.61 0.49 5.04 16 28 H 0.05 1.60 8.07 -2.39 -0.02 1.58 16 29 H 0.03 1.42 6.69 -2.39 -0.02 1.40 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.03 1.10 8.10 -2.39 -0.02 1.08 16 32 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.37 20.91 6.21 -92.71 -0.58 20.34 16 34 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.10 1.98 7.85 -2.39 -0.02 1.96 16 36 H 0.10 1.92 7.87 -2.38 -0.02 1.90 16 37 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.10 2.32 5.98 -2.39 -0.01 2.31 16 39 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 40 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 41 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.12 3.51 6.64 -2.91 -0.02 3.49 16 43 H 0.05 2.34 7.75 -2.39 -0.02 2.32 16 44 H 0.07 2.70 8.01 -2.38 -0.02 2.69 16 Total: -1.00 -76.36 371.00 1.93 -74.44 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.46 Total: 27.16 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.41 Total: 2.79 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -4.59 Total: -135.62 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.06 Total: -23.83 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Atomic # 16 Polarization: 7.12 SS G_CDS: -1.32 Total: 5.80 kcal Total: -76.36 1.93 -74.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500350021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.503 kcal (2) G-P(sol) polarization free energy of solvation -76.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds