Wall clock time and date at job start Sat Apr 11 2020 07:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47042 * 239.99926 * 3 2 1 5 5 H 1.48503 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47251 * 119.99794 * 3 2 1 7 7 C 1.38808 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99401 * 157.94818 * 7 2 1 9 9 N 1.36931 * 120.00483 * 337.95139 * 7 2 1 10 10 C 1.46495 * 120.00147 * 324.91890 * 9 7 2 11 11 C 1.53000 * 109.47332 * 269.99923 * 10 9 7 12 12 C 1.52998 * 109.47137 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47139 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00270 * 180.02562 * 13 12 11 15 15 O 1.21614 * 120.00098 * 0.02562 * 14 13 12 16 16 C 1.47371 * 120.00165 * 179.97438 * 14 13 12 17 17 C 1.38762 * 120.55175 * 0.02562 * 16 14 13 18 18 N 1.31900 * 121.11993 * 179.97438 * 17 16 14 19 19 C 1.31671 * 122.22183 * 0.02562 * 18 17 16 20 20 C 1.39294 * 121.13794 * 359.97438 * 19 18 17 21 21 S 1.75876 * 131.39819 * 179.97438 * 20 19 18 22 22 C 1.75556 * 91.52204 * 179.49348 * 21 20 19 23 23 C 1.32478 * 110.79720 * 0.42658 * 22 21 20 24 24 C 1.40008 * 115.77403 * 359.54906 * 23 22 21 25 25 C 1.46504 * 119.99914 * 144.91998 * 9 7 2 26 26 C 1.52996 * 117.50076 * 3.23618 * 25 9 7 27 27 C 1.52996 * 117.49895 * 294.57820 * 25 9 7 28 28 H 0.96995 * 119.99929 * 355.76794 * 1 2 3 29 29 H 1.08998 * 109.47179 * 150.00148 * 10 9 7 30 30 H 1.09001 * 109.46974 * 29.99795 * 10 9 7 31 31 H 1.08993 * 109.47514 * 300.00207 * 11 10 9 32 32 H 1.09007 * 109.47039 * 59.99836 * 11 10 9 33 33 H 1.09001 * 109.47482 * 300.00064 * 12 11 10 34 34 H 1.08998 * 109.46865 * 60.00536 * 12 11 10 35 35 H 0.97003 * 120.00132 * 0.02562 * 13 12 11 36 36 H 1.07996 * 119.44223 * 0.02562 * 17 16 14 37 37 H 1.07996 * 119.43270 * 179.97438 * 19 18 17 38 38 H 1.08007 * 124.60195 * 179.97438 * 22 21 20 39 39 H 1.08002 * 122.10947 * 179.52829 * 23 22 21 40 40 H 1.09001 * 115.55137 * 148.90851 * 25 9 7 41 41 H 1.09001 * 117.50044 * 0.02562 * 26 25 9 42 42 H 1.09001 * 117.49995 * 145.02011 * 26 25 9 43 43 H 1.09000 * 117.49966 * 214.98355 * 27 25 9 44 44 H 1.09000 * 117.49907 * 359.97266 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0310 -1.2365 -0.3506 9 7 1.4007 -2.3445 0.4462 10 6 0.4455 -2.2803 1.5550 11 6 1.1884 -2.4656 2.8796 12 6 0.1908 -2.3979 4.0377 13 7 0.9022 -2.5748 5.3061 14 6 0.2218 -2.5521 6.4692 15 8 -0.9828 -2.3852 6.4659 16 6 0.9375 -2.7306 7.7451 17 6 2.3117 -2.9223 7.7623 18 7 2.9635 -3.0827 8.8977 19 6 2.3541 -3.0706 10.0648 20 6 0.9766 -2.8851 10.1562 21 16 -0.0988 -2.8228 11.5465 22 6 -1.4928 -2.5491 10.5150 23 6 -1.1362 -2.5237 9.2394 24 6 0.2288 -2.7032 8.9851 25 6 1.7039 -3.6309 -0.1859 26 6 2.7655 -3.6440 -1.2875 27 6 1.2875 -3.8159 -1.6464 28 1 -0.4850 0.8377 0.0620 29 1 -0.2969 -3.0702 1.4412 30 1 -0.0521 -1.3105 1.5501 31 1 1.6860 -3.4353 2.8845 32 1 1.9308 -1.6757 2.9934 33 1 -0.3065 -1.4280 4.0327 34 1 -0.5518 -3.1876 3.9241 35 1 1.8630 -2.7083 5.3088 36 1 2.8569 -2.9397 6.8302 37 1 2.9322 -3.2068 10.9668 38 1 -2.5049 -2.4260 10.8715 39 1 -1.8533 -2.3742 8.4457 40 1 1.6464 -4.5011 0.4680 41 1 3.2388 -2.6955 -1.5418 42 1 3.4062 -4.5229 -1.3586 43 1 0.9564 -4.8079 -1.9536 44 1 0.7876 -2.9807 -2.1369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566594742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:34 Heat of formation + Delta-G solvation = 70.410782 kcal Electronic energy + Delta-G solvation = -26497.598164 eV Core-core repulsion = 22736.035879 eV Total energy + Delta-G solvation = -3761.562284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.08667 -39.11563 -37.16763 -36.70646 -35.29677 -33.66556 -32.38195 -31.25137 -30.66982 -29.34220 -25.82509 -24.91840 -24.54667 -23.26946 -21.52212 -21.39701 -20.94654 -20.86792 -19.69118 -18.59350 -17.63484 -16.70780 -16.46937 -16.19960 -15.71411 -15.50659 -15.27543 -14.76500 -14.67511 -14.55550 -14.39709 -13.98966 -13.74950 -13.47355 -13.07551 -12.65594 -12.58444 -12.36386 -12.22880 -11.96192 -11.55663 -11.31024 -11.04905 -10.84236 -10.78951 -10.70031 -10.49972 -10.24560 -10.22230 -10.06185 -9.74320 -9.64699 -9.59372 -9.43710 -9.28622 -8.98458 -8.49685 -8.25162 -6.61502 -5.82526 -3.43521 -0.09536 0.38969 1.01993 1.46288 1.99438 2.66756 3.10854 3.33053 3.40172 3.41147 3.52911 3.92399 4.13247 4.35464 4.40669 4.45547 4.71426 4.90400 4.91148 4.96998 5.14235 5.20025 5.29600 5.54077 5.59920 5.69481 5.77697 5.88971 5.94162 5.96733 6.04066 6.09913 6.24561 6.29647 6.34807 6.47510 6.61365 6.64486 6.70257 7.01215 7.06823 7.20586 7.40393 7.48569 7.63092 7.76265 8.14160 8.43234 9.11064 9.74179 10.29765 11.13128 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.002159 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.357040 B =12967.028301 C =13315.011696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.011 3.989 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.551 5.551 10 C 0.149 3.851 11 C -0.147 4.147 12 C 0.121 3.879 13 N -0.716 5.716 14 C 0.559 3.441 15 O -0.534 6.534 16 C -0.145 4.145 17 C 0.125 3.875 18 N -0.474 5.474 19 C 0.178 3.822 20 C -0.217 4.217 21 S 0.117 5.883 22 C -0.172 4.172 23 C -0.122 4.122 24 C 0.017 3.983 25 C 0.121 3.879 26 C -0.197 4.197 27 C -0.222 4.222 28 H 0.256 0.744 29 H 0.028 0.972 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.176 0.824 39 H 0.169 0.831 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 -7.342 21.688 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.189 4.189 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.083 0.917 9 N -0.268 5.268 10 C 0.023 3.977 11 C -0.187 4.187 12 C -0.002 4.002 13 N -0.367 5.367 14 C 0.344 3.656 15 O -0.412 6.412 16 C -0.152 4.152 17 C -0.028 4.028 18 N -0.183 5.183 19 C 0.011 3.989 20 C -0.335 4.335 21 S 0.379 5.621 22 C -0.307 4.307 23 C -0.151 4.151 24 C 0.000 4.000 25 C 0.012 3.988 26 C -0.235 4.235 27 C -0.263 4.263 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.183 0.817 37 H 0.183 0.817 38 H 0.193 0.807 39 H 0.187 0.813 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.049 -7.292 23.064 24.212 hybrid contribution -0.180 1.061 -1.578 1.910 sum 0.869 -6.231 21.486 22.388 Atomic orbital electron populations 1.70032 1.05479 1.26247 1.50704 1.25125 0.94976 0.98736 1.00106 0.86485 0.79253 0.83454 0.78325 1.20706 1.21561 1.20859 1.19022 0.94378 0.85523 1.39904 0.91676 1.43394 1.49111 1.01405 1.32866 1.20851 0.90457 1.03359 0.83079 1.22470 0.98871 1.01404 0.95955 1.21532 0.95599 1.02070 0.80974 1.46110 1.11631 1.72604 1.06348 1.17831 0.87038 0.77484 0.83233 1.90734 1.13868 1.49403 1.87192 1.20921 0.94856 1.06249 0.93187 1.22798 0.90073 0.92952 0.97005 1.67751 1.39041 1.13581 0.97895 1.22398 0.88548 0.91478 0.96495 1.23877 0.99843 1.11703 0.98061 1.84167 0.96647 1.74886 1.06410 1.25614 1.03008 1.05810 0.96298 1.20325 0.95255 1.01861 0.97702 1.18274 0.93490 0.96702 0.91558 1.21221 1.00351 0.90201 0.87071 1.23033 0.91932 1.01821 1.06714 1.23363 0.97354 1.00633 1.04979 0.93421 0.95325 0.87971 0.93058 0.91424 0.91097 0.91578 0.76636 0.81732 0.81697 0.80688 0.81339 0.89618 0.88505 0.90807 0.91257 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.41 11.33 55.49 0.63 -23.79 16 2 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 3 Si 0.90 20.90 29.61 -169.99 -5.03 15.87 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.68 8.63 -15.06 -0.13 -6.81 16 8 H 0.07 1.69 6.55 -52.48 -0.34 1.35 16 9 N -0.55 -12.95 2.78 -165.67 -0.46 -13.41 16 10 C 0.15 3.23 5.34 -4.04 -0.02 3.21 16 11 C -0.15 -2.54 5.65 -26.73 -0.15 -2.69 16 12 C 0.12 1.90 5.67 -4.04 -0.02 1.88 16 13 N -0.72 -9.51 5.51 -61.40 -0.34 -9.85 16 14 C 0.56 8.04 7.77 -12.55 -0.10 7.94 16 15 O -0.53 -9.19 14.47 5.27 0.08 -9.11 16 16 C -0.14 -1.80 5.94 -104.21 -0.62 -2.42 16 17 C 0.13 1.34 10.67 -17.33 -0.18 1.16 16 18 N -0.47 -5.13 10.32 -12.88 -0.13 -5.26 16 19 C 0.18 1.66 11.20 -17.23 -0.19 1.46 16 20 C -0.22 -2.18 6.52 -38.48 -0.25 -2.44 16 21 S 0.12 0.90 23.29 -107.50 -2.50 -1.60 16 22 C -0.17 -1.44 11.10 28.82 0.32 -1.12 16 23 C -0.12 -1.37 9.43 -40.84 -0.39 -1.76 16 24 C 0.02 0.20 5.88 -106.74 -0.63 -0.43 16 25 C 0.12 2.49 6.56 -67.93 -0.45 2.05 16 26 C -0.20 -3.80 9.80 -26.70 -0.26 -4.06 16 27 C -0.22 -4.47 10.36 -26.70 -0.28 -4.75 16 28 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 29 H 0.03 0.59 8.07 -51.93 -0.42 0.18 16 30 H 0.10 2.54 5.36 -51.93 -0.28 2.26 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 4.26 6.51 -40.82 -0.27 3.99 16 36 H 0.17 1.37 6.37 -52.49 -0.33 1.03 16 37 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.17 2.10 6.28 -52.49 -0.33 1.77 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.10 2.04 6.37 -51.93 -0.33 1.71 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -30.52 379.19 -11.15 -41.67 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.66 Total: 8.33 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.43 Total: -8.56 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.30 Total: -52.31 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.50 Total: -1.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.52 -11.15 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566594742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.083 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds