Wall clock time and date at job start Sat Apr 11 2020 07:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47042 * 239.99926 * 3 2 1 5 5 H 1.48503 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47251 * 119.99794 * 3 2 1 7 7 C 1.38808 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99401 * 157.94818 * 7 2 1 9 9 N 1.36931 * 120.00483 * 337.95139 * 7 2 1 10 10 C 1.46495 * 120.00147 * 324.91890 * 9 7 2 11 11 C 1.53000 * 109.47332 * 269.99923 * 10 9 7 12 12 C 1.52998 * 109.47137 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47139 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00270 * 180.02562 * 13 12 11 15 15 O 1.21614 * 120.00098 * 0.02562 * 14 13 12 16 16 C 1.47371 * 120.00165 * 179.97438 * 14 13 12 17 17 C 1.38762 * 120.55175 * 0.02562 * 16 14 13 18 18 N 1.31900 * 121.11993 * 179.97438 * 17 16 14 19 19 C 1.31671 * 122.22183 * 0.02562 * 18 17 16 20 20 C 1.39294 * 121.13794 * 359.97438 * 19 18 17 21 21 S 1.75876 * 131.39819 * 179.97438 * 20 19 18 22 22 C 1.75556 * 91.52204 * 179.49348 * 21 20 19 23 23 C 1.32478 * 110.79720 * 0.42658 * 22 21 20 24 24 C 1.40008 * 115.77403 * 359.54906 * 23 22 21 25 25 C 1.46504 * 119.99914 * 144.91998 * 9 7 2 26 26 C 1.52996 * 117.50076 * 3.23618 * 25 9 7 27 27 C 1.52996 * 117.49895 * 294.57820 * 25 9 7 28 28 H 0.96995 * 119.99929 * 355.76794 * 1 2 3 29 29 H 1.08998 * 109.47179 * 150.00148 * 10 9 7 30 30 H 1.09001 * 109.46974 * 29.99795 * 10 9 7 31 31 H 1.08993 * 109.47514 * 300.00207 * 11 10 9 32 32 H 1.09007 * 109.47039 * 59.99836 * 11 10 9 33 33 H 1.09001 * 109.47482 * 300.00064 * 12 11 10 34 34 H 1.08998 * 109.46865 * 60.00536 * 12 11 10 35 35 H 0.97003 * 120.00132 * 0.02562 * 13 12 11 36 36 H 1.07996 * 119.44223 * 0.02562 * 17 16 14 37 37 H 1.07996 * 119.43270 * 179.97438 * 19 18 17 38 38 H 1.08007 * 124.60195 * 179.97438 * 22 21 20 39 39 H 1.08002 * 122.10947 * 179.52829 * 23 22 21 40 40 H 1.09001 * 115.55137 * 148.90851 * 25 9 7 41 41 H 1.09001 * 117.50044 * 0.02562 * 26 25 9 42 42 H 1.09001 * 117.49995 * 145.02011 * 26 25 9 43 43 H 1.09000 * 117.49966 * 214.98355 * 27 25 9 44 44 H 1.09000 * 117.49907 * 359.97266 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0310 -1.2365 -0.3506 9 7 1.4007 -2.3445 0.4462 10 6 0.4455 -2.2803 1.5550 11 6 1.1884 -2.4656 2.8796 12 6 0.1908 -2.3979 4.0377 13 7 0.9022 -2.5748 5.3061 14 6 0.2218 -2.5521 6.4692 15 8 -0.9828 -2.3852 6.4659 16 6 0.9375 -2.7306 7.7451 17 6 2.3117 -2.9223 7.7623 18 7 2.9635 -3.0827 8.8977 19 6 2.3541 -3.0706 10.0648 20 6 0.9766 -2.8851 10.1562 21 16 -0.0988 -2.8228 11.5465 22 6 -1.4928 -2.5491 10.5150 23 6 -1.1362 -2.5237 9.2394 24 6 0.2288 -2.7032 8.9851 25 6 1.7039 -3.6309 -0.1859 26 6 2.7655 -3.6440 -1.2875 27 6 1.2875 -3.8159 -1.6464 28 1 -0.4850 0.8377 0.0620 29 1 -0.2969 -3.0702 1.4412 30 1 -0.0521 -1.3105 1.5501 31 1 1.6860 -3.4353 2.8845 32 1 1.9308 -1.6757 2.9934 33 1 -0.3065 -1.4280 4.0327 34 1 -0.5518 -3.1876 3.9241 35 1 1.8630 -2.7083 5.3088 36 1 2.8569 -2.9397 6.8302 37 1 2.9322 -3.2068 10.9668 38 1 -2.5049 -2.4260 10.8715 39 1 -1.8533 -2.3742 8.4457 40 1 1.6464 -4.5011 0.4680 41 1 3.2388 -2.6955 -1.5418 42 1 3.4062 -4.5229 -1.3586 43 1 0.9564 -4.8079 -1.9536 44 1 0.7876 -2.9807 -2.1369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566594742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:33 Heat of formation + Delta-G solvation = 52.801799 kcal Electronic energy + Delta-G solvation = -26498.361747 eV Core-core repulsion = 22736.035879 eV Total energy + Delta-G solvation = -3762.325867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93908 -40.18660 -38.84472 -37.50718 -36.61045 -35.29195 -33.67778 -32.65045 -31.41842 -30.90669 -27.36395 -25.95052 -25.62709 -24.62642 -23.05091 -22.58432 -22.15667 -21.85795 -21.42483 -19.49552 -18.55522 -18.21899 -17.48291 -17.31165 -17.09319 -16.73937 -16.59960 -16.33736 -15.87799 -15.49554 -15.40203 -15.12954 -14.91573 -14.82352 -14.36182 -13.92909 -13.76909 -13.64335 -13.34128 -13.22045 -13.12993 -12.74886 -12.61531 -12.46823 -12.29418 -12.03759 -12.00732 -11.83343 -11.48610 -11.37667 -11.28051 -11.05360 -10.88921 -10.67148 -10.44964 -10.24648 -10.11741 -8.93465 -8.52827 -7.78569 -5.43859 -0.89917 -0.37577 0.35059 0.75262 1.20947 1.45293 1.48076 1.53914 1.67426 2.01342 2.50148 2.65801 3.15512 3.18712 3.39629 3.42453 3.50366 3.60880 3.65624 3.93578 4.09183 4.18419 4.26353 4.32642 4.33381 4.46314 4.49076 4.55941 4.60871 4.76712 4.77527 4.91578 4.95775 5.03258 5.08723 5.12052 5.17394 5.29300 5.36984 5.37683 5.48364 5.55878 5.69898 5.87321 6.40843 6.46056 6.64762 7.06409 7.16436 7.87377 8.36476 9.11759 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.002159 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.357040 B =12967.028301 C =13315.011696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.038 4.038 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.256 4.256 8 H 0.062 0.938 9 N -0.568 5.568 10 C 0.148 3.852 11 C -0.123 4.123 12 C 0.135 3.865 13 N -0.707 5.707 14 C 0.559 3.441 15 O -0.570 6.570 16 C -0.172 4.172 17 C 0.133 3.867 18 N -0.492 5.492 19 C 0.189 3.811 20 C -0.237 4.237 21 S 0.182 5.818 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.002 4.002 25 C 0.103 3.897 26 C -0.181 4.181 27 C -0.223 4.223 28 H 0.250 0.750 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.413 0.587 36 H 0.184 0.816 37 H 0.201 0.799 38 H 0.204 0.796 39 H 0.146 0.854 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 -8.874 24.179 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.235 4.235 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.386 4.386 8 H 0.080 0.920 9 N -0.286 5.286 10 C 0.022 3.978 11 C -0.163 4.163 12 C 0.011 3.989 13 N -0.359 5.359 14 C 0.346 3.654 15 O -0.451 6.451 16 C -0.179 4.179 17 C -0.020 4.020 18 N -0.201 5.201 19 C 0.022 3.978 20 C -0.355 4.355 21 S 0.445 5.555 22 C -0.292 4.292 23 C -0.189 4.189 24 C -0.019 4.019 25 C -0.005 4.005 26 C -0.219 4.219 27 C -0.264 4.264 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.250 0.750 36 H 0.201 0.799 37 H 0.218 0.782 38 H 0.221 0.779 39 H 0.164 0.836 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.873 -8.847 25.564 27.204 hybrid contribution -0.766 1.461 -2.232 2.775 sum 2.108 -7.387 23.332 24.564 Atomic orbital electron populations 1.70168 1.06686 1.26268 1.52702 1.25744 0.95529 1.01312 1.00894 0.85618 0.77988 0.80144 0.78414 1.20378 1.22324 1.20195 1.19196 0.94241 0.86576 1.38597 0.92025 1.43608 1.49175 1.01948 1.33826 1.20756 0.90712 1.01569 0.84795 1.22107 0.98147 1.01965 0.94100 1.21182 0.95190 1.00875 0.81664 1.45889 1.12248 1.72411 1.05320 1.18182 0.86702 0.76481 0.84007 1.90714 1.15518 1.51138 1.87748 1.20751 0.95556 1.09352 0.92237 1.23058 0.89417 0.91541 0.97990 1.67848 1.39184 1.14731 0.98320 1.23016 0.88576 0.88969 0.97209 1.24154 1.00530 1.12179 0.98641 1.83952 0.94564 1.73006 1.03981 1.26045 1.04966 1.02514 0.95639 1.20227 0.94992 1.05248 0.98450 1.18510 0.94123 0.97026 0.92270 1.21558 1.01429 0.89828 0.87700 1.23039 0.91668 1.02293 1.04924 1.23283 0.98051 1.00789 1.04267 0.94117 0.95113 0.91390 0.90931 0.92661 0.93369 0.91633 0.74966 0.79939 0.78228 0.77871 0.83623 0.86731 0.90778 0.87005 0.88125 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.57 11.33 21.65 0.25 -52.32 16 2 C -0.04 -2.03 4.96 84.86 0.42 -1.61 16 3 Si 0.95 43.89 29.61 68.60 2.03 45.92 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.26 -13.37 8.63 84.03 0.72 -12.64 16 8 H 0.06 3.22 6.55 -2.91 -0.02 3.20 16 9 N -0.57 -26.80 2.78 -678.06 -1.88 -28.69 16 10 C 0.15 6.53 5.34 86.38 0.46 6.99 16 11 C -0.12 -4.25 5.65 30.59 0.17 -4.08 16 12 C 0.14 4.33 5.67 86.38 0.49 4.82 16 13 N -0.71 -18.90 5.51 -466.43 -2.57 -21.47 16 14 C 0.56 16.62 7.77 86.65 0.67 17.29 16 15 O -0.57 -20.80 14.47 -4.08 -0.06 -20.86 16 16 C -0.17 -4.29 5.94 -19.60 -0.12 -4.41 16 17 C 0.13 2.72 10.67 84.81 0.90 3.63 16 18 N -0.49 -9.74 10.32 -194.65 -2.01 -11.74 16 19 C 0.19 3.05 11.20 84.97 0.95 4.00 16 20 C -0.24 -4.33 6.52 22.98 0.15 -4.18 16 21 S 0.18 2.26 23.29 -56.49 -1.32 0.95 16 22 C -0.16 -2.34 11.10 66.69 0.74 -1.60 16 23 C -0.16 -3.64 9.43 21.57 0.20 -3.43 16 24 C 0.00 -0.05 5.88 -21.24 -0.12 -0.18 16 25 C 0.10 4.11 6.56 44.99 0.30 4.40 16 26 C -0.18 -6.64 9.80 30.61 0.30 -6.34 16 27 C -0.22 -8.73 10.36 30.61 0.32 -8.41 16 28 H 0.25 14.06 8.32 -92.71 -0.77 13.29 16 29 H 0.03 1.30 8.07 -2.39 -0.02 1.28 16 30 H 0.07 3.54 5.36 -2.39 -0.01 3.52 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.41 8.49 6.51 -92.71 -0.60 7.89 16 36 H 0.18 2.79 6.37 -2.91 -0.02 2.77 16 37 H 0.20 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.20 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.15 3.95 6.28 -2.91 -0.02 3.93 16 40 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 41 H 0.07 3.07 6.37 -2.39 -0.02 3.05 16 42 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -69.05 379.19 1.44 -67.61 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.44 Total: 26.35 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 6.56 Total: -5.75 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -6.22 Total: -114.22 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.06 Total: -20.86 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.32 Total: 0.95 kcal Total: -69.05 1.44 -67.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566594742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.412 kcal (2) G-P(sol) polarization free energy of solvation -69.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds