Wall clock time and date at job start Sat Apr 11 2020 07:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29434 * 124.80564 * 2 1 4 4 C 1.30933 * 117.36711 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.90575 * 179.97438 * 4 3 2 6 6 C 1.35665 * 114.19040 * 0.02562 * 4 3 2 7 7 C 1.46690 * 126.13049 * 180.02562 * 6 4 3 8 8 O 1.21685 * 119.99840 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99634 * 179.97438 * 7 6 4 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 14 14 C 1.36939 * 120.00440 * 205.00175 * 13 11 10 15 15 H 1.08007 * 119.99440 * 359.97438 * 14 13 11 16 16 C 1.38814 * 120.00407 * 180.02562 * 14 13 11 17 17 N 1.31617 * 119.99778 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99761 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46794 * 90.00095 * 18 16 14 20 20 H 1.48496 * 109.46821 * 210.00178 * 18 16 14 21 21 H 1.48502 * 109.47167 * 330.00252 * 18 16 14 22 22 C 1.50698 * 109.47721 * 174.99896 * 11 10 9 23 23 C 1.38236 * 119.99767 * 279.73535 * 22 11 10 24 24 C 1.38235 * 119.99611 * 179.78466 * 23 22 11 25 25 C 1.38237 * 120.00433 * 0.43410 * 24 23 22 26 26 C 1.38240 * 119.99617 * 359.81390 * 25 24 23 27 27 C 1.38229 * 120.00097 * 99.99496 * 22 11 10 28 28 S 1.70951 * 124.80483 * 180.27384 * 2 1 3 29 29 H 1.09004 * 109.46806 * 90.02449 * 1 2 3 30 30 H 1.08991 * 109.47115 * 210.02172 * 1 2 3 31 31 H 1.09000 * 109.47098 * 330.02439 * 1 2 3 32 32 H 1.09006 * 109.47429 * 269.99893 * 5 4 3 33 33 H 1.08996 * 109.47441 * 30.00412 * 5 4 3 34 34 H 1.09003 * 109.47434 * 150.00697 * 5 4 3 35 35 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 37 37 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 38 38 H 0.96998 * 120.00051 * 24.99940 * 13 11 10 39 39 H 0.97000 * 119.99685 * 179.97438 * 17 16 14 40 40 H 1.07995 * 119.99950 * 359.97438 * 23 22 11 41 41 H 1.08010 * 119.99860 * 180.26736 * 24 23 22 42 42 H 1.07998 * 120.00039 * 179.83574 * 25 24 23 43 43 H 1.08000 * 119.99577 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.00474 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8933 0.0005 5 6 4.5197 2.0418 0.0000 6 6 3.9352 -0.4058 0.0004 7 6 5.3190 -0.8925 0.0015 8 8 6.2426 -0.1003 0.0020 9 7 5.5673 -2.2172 0.0018 10 6 6.9493 -2.7033 0.0022 11 6 6.9518 -4.2333 0.0032 12 1 6.5180 -4.5968 0.9347 13 7 6.1605 -4.7236 -1.1280 14 6 5.5871 -5.9660 -1.0752 15 1 5.7187 -6.5847 -0.1997 16 6 4.8378 -6.4308 -2.1473 17 7 4.2863 -7.6248 -2.0962 18 14 4.6109 -5.3611 -3.6618 19 1 5.7046 -5.6336 -4.6285 20 1 3.3030 -5.6694 -4.2940 21 1 4.6447 -3.9300 -3.2666 22 6 8.3680 -4.7335 -0.1202 23 6 8.9817 -4.7728 -1.3583 24 6 10.2823 -5.2275 -1.4708 25 6 10.9661 -5.6513 -0.3466 26 6 10.3506 -5.6168 0.8907 27 6 9.0514 -5.1580 1.0038 28 16 2.4828 -1.4037 -0.0067 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5141 31 1 -0.3633 0.8902 0.5135 32 1 4.7553 2.3181 -1.0278 33 1 4.0765 2.8952 0.5132 34 1 5.4332 1.7430 0.5142 35 1 4.8311 -2.8487 0.0017 36 1 7.4628 -2.3393 -0.8877 37 1 7.4624 -2.3389 0.8923 38 1 6.0426 -4.1681 -1.9144 39 1 3.7624 -7.9495 -2.8452 40 1 8.4461 -4.4455 -2.2371 41 1 10.7633 -5.2542 -2.4375 42 1 11.9813 -6.0090 -0.4350 43 1 10.8850 -5.9475 1.7690 44 1 8.5707 -5.1309 1.9705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567665388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:12 Heat of formation + Delta-G solvation = 44.659254 kcal Electronic energy + Delta-G solvation = -27177.806738 eV Core-core repulsion = 23415.127784 eV Total energy + Delta-G solvation = -3762.678954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.40433 -39.35225 -38.72306 -36.13230 -33.80599 -33.10706 -32.11812 -30.54292 -30.06216 -29.42550 -29.02900 -27.16407 -23.87969 -23.07250 -22.82131 -22.02667 -21.39075 -20.19938 -19.41602 -18.04554 -17.89295 -16.85147 -16.36084 -15.76960 -15.69073 -15.30801 -14.80197 -14.56486 -14.49074 -14.24854 -14.04942 -13.56236 -13.49358 -13.29719 -13.07249 -12.92329 -12.91231 -12.64026 -12.52490 -12.41642 -12.24463 -12.15490 -11.47755 -11.37862 -11.09947 -10.94933 -10.81474 -10.62565 -10.24092 -10.08694 -9.74140 -9.71921 -9.59448 -9.16845 -8.99941 -8.74180 -8.49437 -8.29734 -7.49122 -5.90230 -3.29194 0.15886 1.08913 1.50469 1.77006 1.83436 2.35614 3.18610 3.24010 3.25624 3.29347 3.36171 3.84815 4.20603 4.45468 4.71077 4.84298 4.97182 5.04442 5.12368 5.16315 5.23189 5.30126 5.32336 5.38784 5.49127 5.52575 5.61668 5.62603 5.64915 5.75011 5.80083 5.91107 5.97084 6.01855 6.22527 6.28198 6.37520 6.50110 6.55732 6.85377 6.90425 7.14183 7.42253 7.47278 7.61590 7.82555 8.21479 8.27198 9.02768 9.74664 9.91747 11.27326 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.003760 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.325602 B = 7444.069905 C = 9380.093847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.055 3.945 3 N -0.482 5.482 4 C 0.146 3.854 5 C -0.088 4.088 6 C -0.301 4.301 7 C 0.595 3.405 8 O -0.532 6.532 9 N -0.711 5.711 10 C 0.118 3.882 11 C 0.204 3.796 12 H 0.075 0.925 13 N -0.740 5.740 14 C -0.249 4.249 15 H 0.093 0.907 16 C 0.015 3.985 17 N -0.926 5.926 18 Si 0.874 3.126 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.080 4.080 23 C -0.087 4.087 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.116 4.116 28 S 0.181 5.819 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.408 0.592 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.363 0.637 39 H 0.261 0.739 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 13.210 5.857 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.220 4.220 3 N -0.198 5.198 4 C 0.008 3.992 5 C -0.146 4.146 6 C -0.425 4.425 7 C 0.380 3.620 8 O -0.412 6.412 9 N -0.363 5.363 10 C -0.006 4.006 11 C 0.093 3.907 12 H 0.093 0.907 13 N -0.382 5.382 14 C -0.378 4.378 15 H 0.111 0.889 16 C -0.182 4.182 17 N -0.573 5.573 18 Si 0.704 3.296 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.203 1.203 22 C -0.084 4.084 23 C -0.106 4.106 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.134 4.134 28 S 0.439 5.561 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.197 0.803 39 H 0.071 0.929 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.170 12.875 5.908 14.166 hybrid contribution 0.001 0.702 -1.374 1.543 sum -0.170 13.577 4.534 14.315 Atomic orbital electron populations 1.20527 0.84708 1.04564 1.04300 1.27414 1.02190 0.91574 1.00866 1.66095 1.04412 1.31403 1.17877 1.20632 0.89889 0.93608 0.95082 1.20641 0.96965 0.93419 1.03618 1.25518 0.98255 0.97298 1.21477 1.16650 0.85906 0.82644 0.76759 1.90756 1.44296 1.55006 1.51119 1.45909 1.10209 1.06102 1.74057 1.21707 0.81735 0.94559 1.02570 1.19443 0.88015 0.89694 0.93525 0.90706 1.42835 1.60301 1.18536 1.16525 1.19007 1.24662 0.91079 1.03054 0.88945 1.24618 0.99722 0.96221 0.97605 1.69685 1.38167 1.17426 1.32000 0.86723 0.77761 0.80322 0.84759 1.20954 1.21520 1.20256 1.20794 0.96540 0.97961 0.93095 1.20913 0.93864 0.98298 0.97491 1.21089 0.95164 1.00040 0.98162 1.21001 0.99587 1.01309 0.93058 1.21010 0.95408 1.00864 0.97233 1.21003 0.94596 0.99673 0.98167 1.84343 0.96120 1.10269 1.65376 0.89135 0.89609 0.89002 0.90256 0.90952 0.88119 0.75530 0.91215 0.90639 0.80321 0.92893 0.86470 0.86797 0.86935 0.86793 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.46 36.01 0.38 -0.24 16 2 C 0.05 0.64 7.39 -13.29 -0.10 0.54 16 3 N -0.48 -6.60 10.50 -7.70 -0.08 -6.68 16 4 C 0.15 2.10 6.79 -83.90 -0.57 1.53 16 5 C -0.09 -1.09 9.70 36.00 0.35 -0.75 16 6 C -0.30 -4.50 6.48 -37.09 -0.24 -4.74 16 7 C 0.60 9.70 7.78 -12.85 -0.10 9.60 16 8 O -0.53 -9.48 14.27 5.20 0.07 -9.41 16 9 N -0.71 -11.30 5.38 -61.61 -0.33 -11.63 16 10 C 0.12 1.85 5.21 -4.04 -0.02 1.83 16 11 C 0.20 3.53 2.65 -69.08 -0.18 3.35 16 12 H 0.08 1.30 7.94 -51.93 -0.41 0.89 16 13 N -0.74 -15.52 3.59 -54.55 -0.20 -15.72 16 14 C -0.25 -6.37 10.40 -15.06 -0.16 -6.52 16 15 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 16 C 0.02 0.41 5.50 -17.43 -0.10 0.31 16 17 N -0.93 -27.51 13.97 55.49 0.78 -26.73 16 18 Si 0.87 20.83 27.74 -169.99 -4.71 16.11 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 22 C -0.08 -1.37 4.92 -104.63 -0.52 -1.89 16 23 C -0.09 -1.51 9.33 -39.58 -0.37 -1.88 16 24 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 25 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 26 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 27 C -0.12 -1.77 9.67 -39.59 -0.38 -2.16 16 28 S 0.18 2.32 22.31 -107.50 -2.40 -0.07 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.36 6.01 -51.93 -0.31 1.05 16 35 H 0.41 6.58 7.32 -40.82 -0.30 6.28 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.36 7.71 5.66 -40.82 -0.23 7.48 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.12 2.08 7.71 -52.49 -0.40 1.68 16 41 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.57 8.04 -52.49 -0.42 1.15 16 LS Contribution 385.11 15.07 5.80 5.80 Total: -1.00 -31.47 385.11 -10.17 -41.63 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -5.90 Total: 14.48 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -3.20 Total: -7.79 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.17 Total: -60.76 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.71 Total: 16.11 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.40 Total: -0.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.47 -10.17 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567665388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.293 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds