Wall clock time and date at job start Sat Apr 11 2020 07:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29434 * 124.80564 * 2 1 4 4 C 1.30933 * 117.36711 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.90575 * 179.97438 * 4 3 2 6 6 C 1.35665 * 114.19040 * 0.02562 * 4 3 2 7 7 C 1.46690 * 126.13049 * 180.02562 * 6 4 3 8 8 O 1.21685 * 119.99840 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99634 * 179.97438 * 7 6 4 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47325 * 294.99862 * 11 10 9 13 13 N 1.46500 * 109.47170 * 54.99826 * 11 10 9 14 14 C 1.36939 * 120.00440 * 205.00175 * 13 11 10 15 15 H 1.08007 * 119.99440 * 359.97438 * 14 13 11 16 16 C 1.38814 * 120.00407 * 180.02562 * 14 13 11 17 17 N 1.31617 * 119.99778 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99761 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46794 * 90.00095 * 18 16 14 20 20 H 1.48496 * 109.46821 * 210.00178 * 18 16 14 21 21 H 1.48502 * 109.47167 * 330.00252 * 18 16 14 22 22 C 1.50698 * 109.47721 * 174.99896 * 11 10 9 23 23 C 1.38236 * 119.99767 * 279.73535 * 22 11 10 24 24 C 1.38235 * 119.99611 * 179.78466 * 23 22 11 25 25 C 1.38237 * 120.00433 * 0.43410 * 24 23 22 26 26 C 1.38240 * 119.99617 * 359.81390 * 25 24 23 27 27 C 1.38229 * 120.00097 * 99.99496 * 22 11 10 28 28 S 1.70951 * 124.80483 * 180.27384 * 2 1 3 29 29 H 1.09004 * 109.46806 * 90.02449 * 1 2 3 30 30 H 1.08991 * 109.47115 * 210.02172 * 1 2 3 31 31 H 1.09000 * 109.47098 * 330.02439 * 1 2 3 32 32 H 1.09006 * 109.47429 * 269.99893 * 5 4 3 33 33 H 1.08996 * 109.47441 * 30.00412 * 5 4 3 34 34 H 1.09003 * 109.47434 * 150.00697 * 5 4 3 35 35 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 37 37 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 38 38 H 0.96998 * 120.00051 * 24.99940 * 13 11 10 39 39 H 0.97000 * 119.99685 * 179.97438 * 17 16 14 40 40 H 1.07995 * 119.99950 * 359.97438 * 23 22 11 41 41 H 1.08010 * 119.99860 * 180.26736 * 24 23 22 42 42 H 1.07998 * 120.00039 * 179.83574 * 25 24 23 43 43 H 1.08000 * 119.99577 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.00474 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8933 0.0005 5 6 4.5197 2.0418 0.0000 6 6 3.9352 -0.4058 0.0004 7 6 5.3190 -0.8925 0.0015 8 8 6.2426 -0.1003 0.0020 9 7 5.5673 -2.2172 0.0018 10 6 6.9493 -2.7033 0.0022 11 6 6.9518 -4.2333 0.0032 12 1 6.5180 -4.5968 0.9347 13 7 6.1605 -4.7236 -1.1280 14 6 5.5871 -5.9660 -1.0752 15 1 5.7187 -6.5847 -0.1997 16 6 4.8378 -6.4308 -2.1473 17 7 4.2863 -7.6248 -2.0962 18 14 4.6109 -5.3611 -3.6618 19 1 5.7046 -5.6336 -4.6285 20 1 3.3030 -5.6694 -4.2940 21 1 4.6447 -3.9300 -3.2666 22 6 8.3680 -4.7335 -0.1202 23 6 8.9817 -4.7728 -1.3583 24 6 10.2823 -5.2275 -1.4708 25 6 10.9661 -5.6513 -0.3466 26 6 10.3506 -5.6168 0.8907 27 6 9.0514 -5.1580 1.0038 28 16 2.4828 -1.4037 -0.0067 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5141 31 1 -0.3633 0.8902 0.5135 32 1 4.7553 2.3181 -1.0278 33 1 4.0765 2.8952 0.5132 34 1 5.4332 1.7430 0.5142 35 1 4.8311 -2.8487 0.0017 36 1 7.4628 -2.3393 -0.8877 37 1 7.4624 -2.3389 0.8923 38 1 6.0426 -4.1681 -1.9144 39 1 3.7624 -7.9495 -2.8452 40 1 8.4461 -4.4455 -2.2371 41 1 10.7633 -5.2542 -2.4375 42 1 11.9813 -6.0090 -0.4350 43 1 10.8850 -5.9475 1.7690 44 1 8.5707 -5.1309 1.9705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567665388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:10 Heat of formation + Delta-G solvation = 25.292885 kcal Electronic energy + Delta-G solvation = -27178.646527 eV Core-core repulsion = 23415.127784 eV Total energy + Delta-G solvation = -3763.518743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51432 -40.57314 -39.93078 -37.56680 -35.36850 -34.06203 -33.80021 -31.89820 -31.54101 -30.32210 -30.13456 -28.43440 -25.51259 -24.34133 -23.94209 -23.26372 -22.57848 -21.55474 -20.65122 -19.76563 -19.05608 -18.00427 -17.65556 -17.08960 -16.89508 -16.64220 -16.05441 -16.01007 -15.70849 -15.55775 -15.19204 -14.85975 -14.71047 -14.47049 -14.39218 -14.19534 -14.08537 -14.03772 -13.56064 -13.40869 -13.27472 -13.10815 -13.00006 -12.92810 -12.51622 -12.39076 -12.19204 -12.05593 -11.80276 -11.71165 -11.27977 -11.06827 -10.80962 -10.66689 -10.24071 -9.78257 -9.69408 -9.61764 -9.32420 -8.01367 -5.36363 -0.87111 0.09172 0.49106 0.56199 0.63061 1.28542 1.34793 1.37156 1.43246 1.98459 2.02057 2.45620 2.94904 2.98920 3.30953 3.44698 3.69024 3.85580 3.89986 4.00825 4.10153 4.17199 4.29527 4.31436 4.38451 4.50669 4.61529 4.62868 4.65194 4.69257 4.75059 4.79024 4.86291 4.95911 5.06150 5.14844 5.24426 5.27815 5.34762 5.68084 5.71039 5.75924 5.87793 6.21447 6.24047 6.28787 6.51122 6.95294 7.04757 7.76986 7.96379 9.19700 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.003760 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.325602 B = 7444.069905 C = 9380.093847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.072 3.928 3 N -0.501 5.501 4 C 0.146 3.854 5 C -0.085 4.085 6 C -0.333 4.333 7 C 0.596 3.404 8 O -0.553 6.553 9 N -0.712 5.712 10 C 0.129 3.871 11 C 0.208 3.792 12 H 0.073 0.927 13 N -0.738 5.738 14 C -0.218 4.218 15 H 0.063 0.937 16 C -0.046 4.046 17 N -0.977 5.977 18 Si 0.935 3.065 19 H -0.287 1.287 20 H -0.295 1.295 21 H -0.255 1.255 22 C -0.100 4.100 23 C -0.113 4.113 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.126 4.126 28 S 0.179 5.821 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.407 0.593 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.364 0.636 39 H 0.257 0.743 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 14.529 6.276 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.203 4.203 3 N -0.217 5.217 4 C 0.007 3.993 5 C -0.144 4.144 6 C -0.456 4.456 7 C 0.382 3.618 8 O -0.434 6.434 9 N -0.363 5.363 10 C 0.005 3.995 11 C 0.099 3.901 12 H 0.091 0.909 13 N -0.381 5.381 14 C -0.348 4.348 15 H 0.081 0.919 16 C -0.239 4.239 17 N -0.627 5.627 18 Si 0.763 3.237 19 H -0.214 1.214 20 H -0.222 1.222 21 H -0.179 1.179 22 C -0.103 4.103 23 C -0.131 4.131 24 C -0.153 4.153 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.144 4.144 28 S 0.437 5.563 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.243 0.757 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.198 0.802 39 H 0.066 0.934 40 H 0.121 0.879 41 H 0.149 0.851 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.167 14.236 6.356 15.591 hybrid contribution -0.056 0.307 -1.380 1.415 sum 0.112 14.543 4.976 15.372 Atomic orbital electron populations 1.20804 0.81595 1.06182 1.05789 1.28198 1.03763 0.90498 0.97802 1.66192 1.04150 1.31969 1.19370 1.20946 0.90582 0.93845 0.93912 1.20636 0.96273 0.93523 1.03927 1.25402 0.98190 0.98045 1.24009 1.16822 0.86447 0.82376 0.76137 1.90735 1.45169 1.55352 1.52193 1.45909 1.10115 1.06137 1.74143 1.21593 0.81868 0.93073 1.02938 1.19507 0.87999 0.90691 0.91870 0.90897 1.42729 1.60694 1.16975 1.17672 1.18885 1.22801 0.91859 1.01297 0.91943 1.25225 1.00597 0.97427 1.00614 1.69842 1.40259 1.19655 1.32939 0.85730 0.76905 0.79916 0.81134 1.21373 1.22212 1.17947 1.20699 0.96266 0.99442 0.93942 1.20975 0.95086 0.99910 0.97145 1.21367 0.94558 0.99677 0.99727 1.21412 1.00866 1.00014 0.92505 1.21414 0.94903 0.99592 0.98513 1.21267 0.95444 0.99430 0.98277 1.84318 0.95577 1.10682 1.65752 0.87454 0.87628 0.87688 0.89784 0.89279 0.89318 0.75698 0.91759 0.89281 0.80246 0.93420 0.87854 0.85074 0.83843 0.83715 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.46 71.24 0.75 -0.28 16 2 C 0.07 1.55 7.39 88.46 0.65 2.21 16 3 N -0.50 -12.93 10.50 -178.29 -1.87 -14.81 16 4 C 0.15 4.07 6.79 42.09 0.29 4.36 16 5 C -0.08 -2.06 9.70 71.23 0.69 -1.37 16 6 C -0.33 -9.80 6.48 23.88 0.15 -9.64 16 7 C 0.60 19.37 7.78 86.45 0.67 20.04 16 8 O -0.55 -19.75 14.27 -4.30 -0.06 -19.82 16 9 N -0.71 -22.52 5.38 -467.07 -2.51 -25.03 16 10 C 0.13 4.01 5.21 86.38 0.45 4.46 16 11 C 0.21 7.22 2.65 44.24 0.12 7.33 16 12 H 0.07 2.55 7.94 -2.39 -0.02 2.53 16 13 N -0.74 -31.10 3.59 -326.50 -1.17 -32.27 16 14 C -0.22 -11.35 10.40 84.03 0.87 -10.47 16 15 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 16 C -0.05 -2.57 5.50 84.86 0.47 -2.11 16 17 N -0.98 -59.63 13.97 21.65 0.30 -59.33 16 18 Si 0.93 43.56 27.74 68.60 1.90 45.46 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 21 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 22 C -0.10 -3.38 4.92 -19.87 -0.10 -3.48 16 23 C -0.11 -3.87 9.33 22.27 0.21 -3.66 16 24 C -0.14 -3.96 10.05 22.27 0.22 -3.74 16 25 C -0.13 -3.32 10.05 22.27 0.22 -3.09 16 26 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 27 C -0.13 -3.67 9.67 22.27 0.22 -3.46 16 28 S 0.18 4.40 22.31 -56.49 -1.26 3.14 16 29 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.94 8.14 -2.38 -0.02 1.93 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 2.39 6.01 -2.39 -0.01 2.37 16 35 H 0.41 13.08 7.32 -92.71 -0.68 12.41 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.36 15.32 5.66 -92.71 -0.52 14.80 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 40 H 0.10 3.73 7.71 -2.91 -0.02 3.71 16 41 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 42 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 44 H 0.13 3.34 8.04 -2.91 -0.02 3.32 16 Total: -1.00 -68.93 385.11 1.21 -67.72 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.22 Total: 40.83 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 6.11 Total: -5.90 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -5.26 Total: -131.44 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.06 Total: -19.82 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.90 Total: 45.46 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.26 Total: 3.14 kcal Total: -68.93 1.21 -67.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567665388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.010 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds