Wall clock time and date at job start Sat Apr 11 2020 07:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00435 * 2 1 4 4 H 1.48494 * 109.47225 * 270.00135 * 3 2 1 5 5 H 1.48502 * 109.46709 * 30.00332 * 3 2 1 6 6 H 1.48497 * 109.46872 * 150.00226 * 3 2 1 7 7 C 1.38821 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64825 * 359.97331 * 9 7 2 11 11 C 1.54910 * 104.83228 * 155.91139 * 10 9 7 12 12 C 1.55155 * 101.58389 * 37.00683 * 11 10 9 13 13 H 1.09002 * 110.71826 * 83.03684 * 12 11 10 14 14 C 1.52992 * 110.72460 * 206.13836 * 12 11 10 15 15 C 1.52997 * 109.47482 * 182.55998 * 14 12 11 16 16 N 1.46505 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.34771 * 119.99622 * 179.97438 * 16 15 14 18 18 O 1.21606 * 120.00433 * 0.02562 * 17 16 15 19 19 C 1.47371 * 119.99500 * 180.02562 * 17 16 15 20 20 C 1.38761 * 120.55675 * 359.72636 * 19 17 16 21 21 N 1.31902 * 121.12028 * 179.70771 * 20 19 17 22 22 C 1.31664 * 122.21891 * 0.59060 * 21 20 19 23 23 C 1.39289 * 121.14200 * 359.68916 * 22 21 20 24 24 S 1.75888 * 131.39793 * 180.02562 * 23 22 21 25 25 C 1.75549 * 91.52187 * 179.97438 * 24 23 22 26 26 C 1.32476 * 110.79863 * 359.97438 * 25 24 23 27 27 C 1.40012 * 115.77893 * 0.02562 * 26 25 24 28 28 C 1.47311 * 125.61574 * 180.19905 * 9 7 2 29 29 H 0.97001 * 119.99164 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36634 * 37.06966 * 10 9 7 31 31 H 1.09000 * 110.46154 * 274.79231 * 10 9 7 32 32 H 1.09002 * 111.00219 * 278.93350 * 11 10 9 33 33 H 1.08994 * 111.03665 * 155.10034 * 11 10 9 34 34 H 1.09002 * 109.47103 * 62.55751 * 14 12 11 35 35 H 1.08998 * 109.46862 * 302.56563 * 14 12 11 36 36 H 1.09002 * 109.47153 * 59.99783 * 15 14 12 37 37 H 1.09001 * 109.46832 * 299.99974 * 15 14 12 38 38 H 0.96996 * 119.99606 * 0.02562 * 16 15 14 39 39 H 1.07999 * 119.44057 * 359.97438 * 20 19 17 40 40 H 1.08003 * 119.42795 * 179.70660 * 22 21 20 41 41 H 1.07994 * 124.60146 * 180.02562 * 25 24 23 42 42 H 1.08002 * 122.10983 * 180.02562 * 26 25 24 43 43 H 1.09007 * 110.06458 * 61.67719 * 28 9 7 44 44 H 1.08995 * 109.85117 * 300.41941 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0006 11 6 -0.4023 -3.9323 -0.6111 12 6 0.7781 -4.7525 -0.0269 13 1 0.5451 -5.1006 0.9794 14 6 1.1222 -5.9314 -0.9394 15 6 2.2447 -6.7558 -0.3062 16 7 2.5737 -7.8851 -1.1797 17 6 3.5410 -8.7531 -0.8232 18 8 4.1404 -8.5995 0.2236 19 6 3.8723 -9.8887 -1.7022 20 6 3.1918 -10.0783 -2.8965 21 7 3.4831 -11.0875 -3.6943 22 6 4.4169 -11.9678 -3.4003 23 6 5.1539 -11.8700 -2.2224 24 16 6.4413 -12.8748 -1.5691 25 6 6.5814 -11.8530 -0.1485 26 6 5.7152 -10.8521 -0.2016 27 6 4.8959 -10.8155 -1.3364 28 6 1.9336 -3.7299 0.0031 29 1 -0.4849 0.8401 0.0004 30 1 -0.5998 -1.7588 -0.6147 31 1 -0.5284 -2.4862 1.0185 32 1 -0.3535 -3.8981 -1.6995 33 1 -1.3594 -4.3330 -0.2774 34 1 1.4492 -5.5567 -1.9093 35 1 0.2404 -6.5585 -1.0708 36 1 1.9176 -7.1305 0.6638 37 1 3.1264 -6.1286 -0.1748 38 1 2.0958 -8.0074 -2.0148 39 1 2.4134 -9.3853 -3.1798 40 1 4.6151 -12.7797 -4.0845 41 1 7.2796 -12.0175 0.6588 42 1 5.6455 -10.1110 0.5810 43 1 2.5280 -3.8686 0.9062 44 1 2.5614 -3.8541 -0.8791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567706339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:16 Heat of formation + Delta-G solvation = 23.418878 kcal Electronic energy + Delta-G solvation = -26299.765455 eV Core-core repulsion = 22536.165449 eV Total energy + Delta-G solvation = -3763.600006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93330 -40.25212 -39.33984 -37.48249 -36.42473 -34.82716 -33.25840 -32.08002 -31.40858 -30.61736 -28.21966 -26.72132 -25.70419 -25.34683 -23.58427 -22.30983 -22.04144 -21.74647 -20.84269 -19.47919 -18.89710 -18.50325 -17.47021 -17.16775 -17.05641 -16.71309 -16.58964 -16.31545 -15.59376 -15.47837 -15.39832 -15.12768 -14.87110 -14.69414 -14.26738 -13.86346 -13.70999 -13.52015 -13.33353 -13.32954 -13.15509 -13.08219 -12.80075 -12.70259 -12.23251 -12.01554 -12.00155 -11.78205 -11.63808 -11.43667 -11.35241 -11.19216 -11.04205 -10.74524 -10.65082 -10.23930 -10.10995 -8.93503 -8.87545 -7.77705 -5.21788 -0.89331 -0.35918 0.35556 0.75978 1.21428 1.44799 1.46857 1.55586 1.68656 2.01214 2.48990 2.67253 3.20349 3.31030 3.41090 3.59582 3.65969 3.74325 3.75814 3.93962 3.95582 4.13375 4.18448 4.27508 4.35063 4.37294 4.49488 4.64556 4.71756 4.74558 4.78763 4.89679 5.01104 5.04583 5.11548 5.16601 5.20439 5.27053 5.30149 5.37399 5.44064 5.52575 5.70211 5.84261 6.32744 6.41724 6.66172 7.08735 7.11739 7.79670 8.43437 9.23840 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.021861 B = 0.001806 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.505195 B =15498.084463 C =16049.927875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.630 5.630 10 C 0.148 3.852 11 C -0.121 4.121 12 C -0.084 4.084 13 H 0.079 0.921 14 C -0.102 4.102 15 C 0.124 3.876 16 N -0.707 5.707 17 C 0.560 3.440 18 O -0.570 6.570 19 C -0.173 4.173 20 C 0.134 3.866 21 N -0.492 5.492 22 C 0.189 3.811 23 C -0.238 4.238 24 S 0.176 5.824 25 C -0.157 4.157 26 C -0.159 4.159 27 C -0.003 4.003 28 C 0.132 3.868 29 H 0.247 0.753 30 H 0.071 0.929 31 H -0.018 1.018 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.415 0.585 39 H 0.190 0.810 40 H 0.199 0.801 41 H 0.203 0.797 42 H 0.147 0.853 43 H 0.012 0.988 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.523 -31.264 -7.163 33.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.160 4.160 12 C -0.103 4.103 13 H 0.097 0.903 14 C -0.139 4.139 15 C 0.001 3.999 16 N -0.359 5.359 17 C 0.347 3.653 18 O -0.451 6.451 19 C -0.180 4.180 20 C -0.018 4.018 21 N -0.201 5.201 22 C 0.022 3.978 23 C -0.355 4.355 24 S 0.439 5.561 25 C -0.293 4.293 26 C -0.188 4.188 27 C -0.020 4.020 28 C 0.008 3.992 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.000 1.000 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.254 0.746 39 H 0.207 0.793 40 H 0.215 0.785 41 H 0.220 0.780 42 H 0.164 0.836 43 H 0.030 0.970 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.183 -32.266 -7.628 34.404 hybrid contribution -0.040 2.845 1.477 3.206 sum 9.143 -29.421 -6.151 31.417 Atomic orbital electron populations 1.70068 1.06120 1.24962 1.58677 1.25648 0.96721 1.00977 1.02860 0.85050 0.77472 0.79045 0.77603 1.20976 1.21884 1.19823 1.19451 0.90906 0.84090 1.42454 0.90598 1.44944 1.02945 1.00989 1.86708 1.21761 0.83877 0.95658 0.96349 1.22876 0.97922 0.95047 1.00138 1.22001 0.94716 0.93827 0.99762 0.90278 1.21653 0.98336 0.95290 0.98665 1.21356 0.98247 0.86563 0.93739 1.45794 1.37624 1.27094 1.25395 1.18125 0.79736 0.82168 0.85245 1.90732 1.52785 1.75436 1.26147 1.20771 1.00832 0.97810 0.98573 1.23126 0.96449 0.94486 0.87779 1.67852 1.16347 1.03882 1.32041 1.22983 0.87237 0.96020 0.91560 1.24145 1.06635 1.02549 1.02190 1.84014 1.31437 1.27233 1.13369 1.26036 1.02733 0.97500 1.03064 1.20234 0.97532 1.01664 0.99404 1.18522 0.95247 0.93796 0.94415 1.21640 0.95315 0.85005 0.97286 0.94341 0.91095 0.99973 0.91308 0.89542 0.90532 0.88129 0.91533 0.92967 0.74629 0.79342 0.78456 0.78045 0.83559 0.97045 0.95484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.53 10.09 21.65 0.22 -57.31 16 2 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 3 Si 0.98 46.72 29.55 68.60 2.03 48.74 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.24 -13.91 10.28 84.04 0.86 -13.04 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.63 -33.35 3.40 -691.23 -2.35 -35.70 16 10 C 0.15 7.39 5.89 86.86 0.51 7.90 16 11 C -0.12 -4.23 6.54 31.99 0.21 -4.02 16 12 C -0.08 -2.60 2.95 -9.61 -0.03 -2.63 16 13 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 14 C -0.10 -2.18 4.72 30.59 0.14 -2.04 16 15 C 0.12 2.88 5.54 86.38 0.48 3.36 16 16 N -0.71 -13.63 5.51 -466.43 -2.57 -16.19 16 17 C 0.56 13.72 7.77 86.65 0.67 14.39 16 18 O -0.57 -18.27 14.47 -4.05 -0.06 -18.33 16 19 C -0.17 -3.60 5.94 -19.60 -0.12 -3.71 16 20 C 0.13 2.15 10.67 84.81 0.90 3.06 16 21 N -0.49 -8.07 10.32 -194.65 -2.01 -10.08 16 22 C 0.19 2.57 11.20 84.97 0.95 3.52 16 23 C -0.24 -3.79 6.52 22.98 0.15 -3.64 16 24 S 0.18 1.93 23.29 -56.49 -1.32 0.61 16 25 C -0.16 -2.10 11.10 66.69 0.74 -1.36 16 26 C -0.16 -3.24 9.43 21.57 0.20 -3.04 16 27 C 0.00 -0.06 5.88 -21.24 -0.12 -0.18 16 28 C 0.13 5.51 6.13 86.67 0.53 6.04 16 29 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.07 4.02 5.87 -2.39 -0.01 4.01 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 32 H 0.07 2.29 8.05 -2.39 -0.02 2.28 16 33 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.08 1.64 8.00 -2.39 -0.02 1.62 16 35 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.47 7.58 -2.39 -0.02 1.45 16 38 H 0.42 5.04 6.51 -92.71 -0.60 4.44 16 39 H 0.19 1.76 6.37 -2.91 -0.02 1.74 16 40 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.15 3.59 6.28 -2.91 -0.02 3.57 16 43 H 0.01 0.49 8.14 -2.38 -0.02 0.48 16 44 H 0.03 1.10 7.73 -2.39 -0.02 1.08 16 Total: -1.00 -77.33 371.49 0.93 -76.40 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.43 Total: 10.87 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 6.56 Total: 1.00 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -6.71 Total: -119.29 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.06 Total: -18.33 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.32 Total: 0.61 kcal Total: -77.33 0.93 -76.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567706339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.816 kcal (2) G-P(sol) polarization free energy of solvation -77.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds