Wall clock time and date at job start Sat Apr 11 2020 07:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29517 * 121.53407 * 2 1 4 4 S 1.69482 * 107.84719 * 180.02562 * 3 2 1 5 5 C 1.72021 * 96.02441 * 359.97438 * 4 3 2 6 6 C 1.37889 * 105.36460 * 0.02562 * 5 4 3 7 7 C 1.47343 * 123.08510 * 179.97438 * 6 5 4 8 8 O 1.21616 * 120.00031 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99981 * 0.02794 * 7 6 5 10 10 C 1.46501 * 119.99747 * 180.02562 * 9 7 6 11 11 C 1.50708 * 109.46684 * 180.02562 * 10 9 7 12 12 C 1.38266 * 119.99502 * 257.62487 * 11 10 9 13 13 C 1.38216 * 119.99583 * 179.74668 * 12 11 10 14 14 C 1.38258 * 119.99752 * 0.55055 * 13 12 11 15 15 C 1.38207 * 120.00296 * 359.70107 * 14 13 12 16 16 C 1.38209 * 120.00250 * 77.90071 * 11 10 9 17 17 C 1.50699 * 120.00107 * 359.97438 * 16 11 10 18 18 N 1.46493 * 109.47196 * 181.34102 * 17 16 11 19 19 C 1.46496 * 120.00494 * 268.82847 * 18 17 16 20 20 C 1.36940 * 119.99741 * 88.82692 * 18 17 16 21 21 H 1.08003 * 120.00233 * 20.10492 * 20 18 17 22 22 C 1.38816 * 119.99996 * 200.09976 * 20 18 17 23 23 N 1.31617 * 119.99917 * 15.26176 * 22 20 18 24 24 Si 1.86801 * 120.00073 * 195.25843 * 22 20 18 25 25 H 1.48500 * 109.47112 * 94.96371 * 24 22 20 26 26 H 1.48492 * 109.47319 * 214.96809 * 24 22 20 27 27 H 1.48507 * 109.47183 * 334.96714 * 24 22 20 28 28 H 1.09000 * 109.47279 * 269.98150 * 1 2 3 29 29 H 1.09004 * 109.47149 * 29.98088 * 1 2 3 30 30 H 1.09000 * 109.47508 * 149.97449 * 1 2 3 31 31 H 1.08006 * 127.31384 * 179.97438 * 5 4 3 32 32 H 0.96998 * 120.00255 * 359.97438 * 9 7 6 33 33 H 1.09003 * 109.46878 * 299.99247 * 10 9 7 34 34 H 1.08998 * 109.47330 * 60.00353 * 10 9 7 35 35 H 1.07996 * 119.99792 * 359.97438 * 12 11 10 36 36 H 1.07998 * 119.99970 * 180.27264 * 13 12 11 37 37 H 1.07998 * 119.99387 * 179.72845 * 14 13 12 38 38 H 1.08000 * 120.00465 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.47153 * 301.34697 * 17 16 11 40 40 H 1.09005 * 109.46938 * 61.34076 * 17 16 11 41 41 H 1.08993 * 109.47373 * 95.42410 * 19 18 17 42 42 H 1.09001 * 109.47393 * 215.42305 * 19 18 17 43 43 H 1.08995 * 109.47013 * 335.41965 * 19 18 17 44 44 H 0.97006 * 119.99853 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 -0.0007 5 6 3.6016 -1.0020 -0.0003 6 6 2.2352 -1.1868 -0.0002 7 6 1.6036 -2.5180 -0.0003 8 8 0.3913 -2.6159 -0.0007 9 7 2.3692 -3.6271 -0.0001 10 6 1.7411 -4.9507 -0.0008 11 6 2.8096 -6.0136 0.0004 12 6 3.1199 -6.6830 -1.1690 13 6 4.1034 -7.6541 -1.1691 14 6 4.7689 -7.9641 0.0025 15 6 4.4550 -7.2986 1.1724 16 6 3.4751 -6.3232 1.1714 17 6 3.1329 -5.5975 2.4471 18 7 3.9932 -6.0810 3.5297 19 6 3.5571 -7.2011 4.3673 20 6 5.2051 -5.4860 3.7589 21 1 5.3965 -4.4900 3.3878 22 6 6.1876 -6.1630 4.4684 23 7 6.0843 -7.4609 4.6606 24 14 7.6565 -5.2319 5.1501 25 1 7.3928 -4.8570 6.5627 26 1 8.8635 -6.0943 5.0839 27 1 7.8810 -4.0038 4.3458 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3634 -0.8897 -0.5142 31 1 4.3657 -1.7654 -0.0009 32 1 3.3360 -3.5491 -0.0001 33 1 1.1206 -5.0589 0.8888 34 1 1.1218 -5.0585 -0.8912 35 1 2.5964 -6.4444 -2.0829 36 1 4.3489 -8.1739 -2.0834 37 1 5.5343 -8.7260 0.0033 38 1 4.9751 -7.5404 2.0875 39 1 3.2887 -4.5275 2.3094 40 1 2.0894 -5.7829 2.7018 41 1 3.9761 -8.1295 3.9794 42 1 3.9019 -7.0461 5.3896 43 1 2.4689 -7.2609 4.3561 44 1 6.7711 -7.9341 5.1560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570025757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:37 Heat of formation + Delta-G solvation = 57.974783 kcal Electronic energy + Delta-G solvation = -27618.362805 eV Core-core repulsion = 23856.261255 eV Total energy + Delta-G solvation = -3762.101550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.48665 -39.22274 -38.05427 -35.62716 -34.98176 -32.43168 -31.85338 -30.63645 -29.93107 -29.66228 -26.61105 -25.98018 -25.51923 -24.29936 -22.20613 -21.43300 -20.87551 -20.04357 -19.60911 -18.56371 -17.15005 -16.79619 -16.11416 -15.72153 -15.55938 -15.14624 -14.83411 -14.57632 -14.17075 -14.13146 -13.86623 -13.66331 -13.46880 -13.23023 -13.02579 -12.59178 -12.52485 -12.48384 -12.35624 -12.18342 -11.63819 -11.52280 -11.35957 -10.95768 -10.90503 -10.83178 -10.57844 -10.47918 -10.33064 -10.08364 -9.97810 -9.91775 -9.85660 -9.15100 -8.82970 -8.63895 -8.36170 -8.07741 -6.92981 -5.83165 -3.27661 0.22053 1.14682 1.54449 1.66213 1.68572 1.95137 3.15859 3.23490 3.31682 3.38816 3.40072 4.26568 4.31659 4.41788 4.71378 4.77523 4.96941 5.10771 5.20812 5.24306 5.26960 5.39311 5.51018 5.51500 5.55502 5.60275 5.75242 5.77710 5.96982 6.03840 6.21691 6.26097 6.38447 6.40663 6.48406 6.51474 6.68103 6.70072 6.87152 7.15390 7.30458 7.32947 7.46454 7.63288 7.64799 7.73983 8.11987 8.27691 9.13093 9.75664 10.23817 11.21498 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009251 B = 0.003667 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.057256 B = 7632.911420 C = 9332.881921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.166 3.834 3 N -0.474 5.474 4 S 0.291 5.709 5 C -0.169 4.169 6 C -0.211 4.211 7 C 0.586 3.414 8 O -0.533 6.533 9 N -0.711 5.711 10 C 0.170 3.830 11 C -0.130 4.130 12 C -0.114 4.114 13 C -0.140 4.140 14 C -0.120 4.120 15 C -0.085 4.085 16 C -0.075 4.075 17 C 0.181 3.819 18 N -0.599 5.599 19 C 0.160 3.840 20 C -0.253 4.253 21 H 0.068 0.932 22 C 0.005 3.995 23 N -0.906 5.906 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.193 0.807 32 H 0.402 0.598 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.160 0.840 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.044 0.956 43 H -0.002 1.002 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 8.063 -12.167 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.011 4.011 3 N -0.294 5.294 4 S 0.446 5.554 5 C -0.318 4.318 6 C -0.233 4.233 7 C 0.370 3.630 8 O -0.412 6.412 9 N -0.362 5.362 10 C 0.047 3.953 11 C -0.131 4.131 12 C -0.132 4.132 13 C -0.158 4.158 14 C -0.138 4.138 15 C -0.102 4.102 16 C -0.078 4.078 17 C 0.054 3.946 18 N -0.321 5.321 19 C 0.016 3.984 20 C -0.383 4.383 21 H 0.085 0.915 22 C -0.194 4.194 23 N -0.551 5.551 24 Si 0.732 3.268 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.210 0.790 32 H 0.237 0.763 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.178 0.822 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.017 0.983 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.900 9.950 -12.034 16.692 hybrid contribution 0.910 -1.419 0.354 1.722 sum -4.990 8.531 -11.680 15.301 Atomic orbital electron populations 1.20926 0.85387 1.05000 1.04361 1.21451 0.99569 0.86654 0.93446 1.76479 1.00335 1.26224 1.26399 1.84103 1.10637 0.95664 1.64975 1.27510 0.99481 1.04892 0.99937 1.20412 0.92117 0.96193 1.14529 1.17259 0.86439 0.82862 0.76431 1.90712 1.13265 1.86600 1.50662 1.45955 1.10397 1.05401 1.74418 1.20143 0.93475 0.78932 1.02734 1.19628 0.99803 0.99617 0.94055 1.20832 0.98292 0.97336 0.96780 1.20981 0.97855 0.99083 0.97918 1.21296 0.99526 0.99825 0.93177 1.21759 0.95624 0.93398 0.99450 1.21299 0.94500 0.96152 0.95895 1.19907 0.93810 0.96044 0.84880 1.43964 1.18095 1.38244 1.31777 1.20860 0.91906 0.90507 0.95161 1.19157 0.89910 0.96979 1.32211 0.91462 1.24900 0.97560 0.95177 1.01733 1.70050 1.35014 1.05965 1.44054 0.86289 0.82290 0.78983 0.79283 1.21552 1.21794 1.20560 0.89733 0.90975 0.87050 0.79016 0.76294 0.90318 0.90938 0.87010 0.87089 0.86863 0.82205 0.92478 0.92836 0.95005 0.93729 0.98306 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.51 36.00 0.34 -0.70 16 2 C 0.17 2.06 6.75 -83.20 -0.56 1.50 16 3 N -0.47 -5.96 11.97 32.50 0.39 -5.57 16 4 S 0.29 2.95 23.69 -107.50 -2.55 0.40 16 5 C -0.17 -1.69 10.79 30.60 0.33 -1.36 16 6 C -0.21 -2.54 5.86 -105.95 -0.62 -3.16 16 7 C 0.59 7.73 7.78 -12.56 -0.10 7.64 16 8 O -0.53 -8.12 13.75 5.26 0.07 -8.04 16 9 N -0.71 -8.73 5.08 -62.59 -0.32 -9.05 16 10 C 0.17 2.21 5.17 -5.19 -0.03 2.18 16 11 C -0.13 -1.90 5.25 -104.62 -0.55 -2.45 16 12 C -0.11 -1.55 9.67 -39.58 -0.38 -1.93 16 13 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 14 C -0.12 -1.99 10.05 -39.59 -0.40 -2.39 16 15 C -0.08 -1.64 9.16 -39.58 -0.36 -2.00 16 16 C -0.07 -1.33 5.88 -104.63 -0.61 -1.94 16 17 C 0.18 3.45 4.94 -5.20 -0.03 3.42 16 18 N -0.60 -13.80 1.74 -182.51 -0.32 -14.12 16 19 C 0.16 3.72 8.73 59.84 0.52 4.24 16 20 C -0.25 -6.38 9.01 -15.06 -0.14 -6.52 16 21 H 0.07 1.68 7.87 -52.48 -0.41 1.26 16 22 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 23 N -0.91 -24.40 10.67 55.49 0.59 -23.81 16 24 Si 0.90 20.78 29.58 -169.99 -5.03 15.76 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.11 1.31 5.63 -51.93 -0.29 1.01 16 31 H 0.19 1.48 7.20 -52.48 -0.38 1.10 16 32 H 0.40 4.53 7.04 -40.82 -0.29 4.25 16 33 H 0.08 1.10 7.19 -51.93 -0.37 0.72 16 34 H 0.07 0.88 7.98 -51.93 -0.41 0.47 16 35 H 0.11 1.26 8.02 -52.49 -0.42 0.84 16 36 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.16 3.76 5.83 -52.49 -0.31 3.46 16 39 H 0.06 1.06 7.58 -51.93 -0.39 0.66 16 40 H 0.05 0.97 7.34 -51.93 -0.38 0.59 16 41 H 0.03 0.79 6.88 -51.93 -0.36 0.43 16 42 H 0.04 1.12 7.22 -51.93 -0.38 0.74 16 43 H 0.00 -0.03 7.82 -51.93 -0.41 -0.44 16 44 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -28.72 375.77 -10.19 -38.90 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.62 Total: 5.70 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.07 Total: -5.83 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.35 Total: -52.55 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.07 Total: -8.04 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.55 Total: 0.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.72 -10.19 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570025757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.877 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds