Wall clock time and date at job start Sat Apr 11 2020 07:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47232 * 2 1 4 4 H 1.09003 * 109.46563 * 304.99569 * 3 2 1 5 5 C 1.50695 * 109.47374 * 184.99995 * 3 2 1 6 6 H 1.07997 * 120.00115 * 239.99560 * 5 3 2 7 7 C 1.37883 * 120.00145 * 59.99429 * 5 3 2 8 8 N 1.31515 * 119.99967 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00161 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47171 * 90.00345 * 9 7 5 11 11 H 1.48496 * 109.47443 * 210.00346 * 9 7 5 12 12 H 1.48502 * 109.47255 * 330.00420 * 9 7 5 13 13 N 1.46501 * 109.47189 * 64.99436 * 3 2 1 14 14 C 1.34772 * 120.00398 * 275.00196 * 13 3 2 15 15 O 1.21358 * 119.99624 * 0.02562 * 14 13 3 16 16 C 1.49363 * 120.00246 * 179.97438 * 14 13 3 17 17 O 1.21361 * 119.99785 * 0.02562 * 16 14 13 18 18 N 1.34772 * 120.00246 * 179.97438 * 16 14 13 19 19 C 1.39237 * 120.00486 * 174.90484 * 18 16 14 20 20 C 1.39146 * 119.64479 * 185.10378 * 19 18 16 21 21 C 1.38457 * 119.29701 * 179.77759 * 20 19 18 22 22 C 1.38618 * 118.58491 * 0.48594 * 21 20 19 23 23 C 1.39167 * 119.22916 * 359.75723 * 22 21 20 24 24 C 1.48424 * 119.68564 * 180.02562 * 23 22 21 25 25 N 1.34061 * 126.67489 * 0.02562 * 24 23 22 26 26 N 1.28977 * 107.26798 * 180.02562 * 25 24 23 27 27 N 1.28727 * 108.94932 * 359.97438 * 26 25 24 28 28 H 0.97006 * 125.33898 * 179.97438 * 27 26 25 29 29 N 1.28876 * 109.31945 * 359.73411 * 27 26 25 30 30 N 1.32262 * 119.63540 * 5.37913 * 19 18 16 31 31 H 1.08997 * 109.47050 * 300.00255 * 1 2 3 32 32 H 1.09002 * 109.47047 * 60.00428 * 1 2 3 33 33 H 1.09001 * 109.47088 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47050 * 239.99744 * 2 1 3 35 35 H 1.09002 * 109.47047 * 119.99572 * 2 1 3 36 36 H 0.97000 * 120.00202 * 179.97438 * 8 7 5 37 37 H 0.97001 * 119.99432 * 95.00305 * 13 3 2 38 38 H 0.96998 * 120.00014 * 354.90556 * 18 16 14 39 39 H 1.08002 * 120.34737 * 359.97438 * 20 19 18 40 40 H 1.08003 * 120.70781 * 180.22661 * 21 20 19 41 41 H 1.08001 * 120.38813 * 179.72913 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5539 -0.3520 -0.7597 11 1 6.3836 0.9214 -2.8164 12 1 6.5576 2.0719 -0.6889 13 7 1.6524 2.0976 1.2518 14 6 0.4351 2.6645 1.3669 15 8 -0.3400 2.6319 0.4337 16 6 0.0397 3.3318 2.6433 17 8 0.8148 3.3639 3.5766 18 7 -1.1774 3.8992 2.7582 19 6 -1.5868 4.4274 3.9797 20 6 -2.8826 4.9148 4.1191 21 6 -3.2836 5.4342 5.3383 22 6 -2.3706 5.4596 6.3810 23 6 -1.0881 4.9607 6.1735 24 6 -0.1026 4.9824 7.2831 25 7 -0.3046 5.4463 8.5246 26 7 0.7958 5.2843 9.1776 27 7 1.6673 4.7426 8.4003 28 1 2.5771 4.5161 8.6491 29 7 1.1399 4.5438 7.2414 30 7 -0.7380 4.4652 4.9934 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.8293 -0.0606 -2.9502 37 1 2.2719 2.1232 1.9977 38 1 -1.7681 3.9396 1.9900 39 1 -3.5693 4.8854 3.2859 40 1 -4.2852 5.8154 5.4728 41 1 -2.6511 5.8623 7.3431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590420433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:56 Heat of formation + Delta-G solvation = 85.729782 kcal Electronic energy + Delta-G solvation = -29116.877101 eV Core-core repulsion = 24841.978635 eV Total energy + Delta-G solvation = -4274.898466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.51809 -42.18278 -41.00911 -39.50387 -37.22717 -36.37388 -35.34867 -34.55381 -34.28129 -33.23997 -32.80701 -31.20588 -29.18926 -26.93171 -26.13953 -25.63062 -24.88912 -23.56087 -23.29144 -21.83080 -21.17094 -20.46903 -19.95602 -18.77043 -18.21462 -18.18853 -17.66144 -17.33719 -17.01954 -16.91778 -16.67121 -16.02261 -15.92858 -15.72507 -15.10263 -14.99482 -14.79479 -14.62303 -14.10167 -13.83916 -13.51508 -13.49139 -13.20955 -13.09769 -12.97046 -12.72805 -12.64216 -12.61451 -12.37388 -12.20320 -12.16511 -12.11703 -11.61058 -11.56718 -11.11042 -10.96007 -10.75565 -10.57257 -10.16881 -9.83441 -9.37306 -8.19507 -6.36233 -0.48857 0.01142 0.14429 0.65944 1.19036 1.22871 1.35630 1.43993 1.45193 1.55359 2.22066 2.24142 2.39857 2.71963 2.85475 3.05277 3.10401 3.50881 3.74228 3.91385 4.06173 4.11364 4.24713 4.39179 4.48851 4.55294 4.59254 4.71556 4.92708 5.02198 5.12845 5.17301 5.22570 5.36511 5.39704 5.53839 5.55269 5.59929 5.69319 5.78149 5.87670 6.10990 6.44885 6.66312 6.77810 6.98488 7.09679 7.11953 7.35675 8.85686 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.002628 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.153344 B =10653.649070 C =12324.665155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.017 0.983 5 C -0.555 4.555 6 H 0.066 0.934 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.269 1.269 13 N -0.672 5.672 14 C 0.497 3.503 15 O -0.544 6.544 16 C 0.503 3.497 17 O -0.474 6.474 18 N -0.626 5.626 19 C 0.336 3.664 20 C -0.164 4.164 21 C -0.032 4.032 22 C -0.144 4.144 23 C 0.195 3.805 24 C 0.207 3.793 25 N -0.270 5.270 26 N -0.051 5.051 27 N -0.205 5.205 28 H 0.493 0.507 29 N -0.278 5.278 30 N -0.492 5.492 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.267 0.733 37 H 0.406 0.594 38 H 0.441 0.559 39 H 0.183 0.817 40 H 0.199 0.801 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 10.251 18.239 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.035 0.965 5 C -0.593 4.593 6 H 0.084 0.916 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.322 5.322 14 C 0.277 3.723 15 O -0.423 6.423 16 C 0.283 3.717 17 O -0.342 6.342 18 N -0.277 5.277 19 C 0.104 3.896 20 C -0.187 4.187 21 C -0.057 4.057 22 C -0.167 4.167 23 C 0.056 3.944 24 C -0.074 4.074 25 N -0.144 5.144 26 N -0.046 5.046 27 N -0.056 5.056 28 H 0.352 0.648 29 N -0.131 5.131 30 N -0.209 5.209 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.241 0.759 38 H 0.283 0.717 39 H 0.201 0.799 40 H 0.216 0.784 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.050 9.874 18.485 24.175 hybrid contribution 1.092 -0.218 -0.665 1.297 sum -10.958 9.657 17.820 23.041 Atomic orbital electron populations 1.21701 0.96406 0.99687 1.00488 1.21822 0.94309 0.98549 1.01575 1.18631 0.93989 0.89571 0.80299 0.96508 1.21520 0.91341 1.39530 1.06870 0.91623 1.25661 1.03111 0.94179 0.94869 1.70003 1.36961 1.37957 1.09755 0.85412 0.79317 0.78730 0.77303 1.19760 1.20778 1.19380 1.46248 1.14423 1.53191 1.18315 1.20032 0.83639 0.80747 0.87877 1.90717 1.51350 1.59923 1.40344 1.20495 0.82940 0.79909 0.88329 1.90873 1.49822 1.54061 1.39470 1.43113 1.17242 1.55574 1.11751 1.18579 0.90760 0.94932 0.85296 1.22136 0.93618 1.01039 1.01919 1.21904 1.01214 0.93181 0.89444 1.22248 0.91420 1.00150 1.02908 1.17739 0.90562 0.98719 0.87410 1.23437 0.90444 1.00166 0.93352 1.75998 1.16245 1.19546 1.02609 1.78798 0.94191 1.11634 1.19938 1.47914 1.16483 1.37155 1.04050 0.64795 1.75313 1.10812 1.20741 1.06188 1.67082 1.36686 1.17404 0.99687 0.94159 0.94301 0.93271 0.90263 0.94431 0.92333 0.75863 0.71692 0.79932 0.78438 0.81486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 8.51 71.98 0.61 -4.70 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.77 16 3 C 0.28 13.98 2.24 44.24 0.10 14.08 16 4 H 0.02 0.98 7.58 -2.39 -0.02 0.96 16 5 C -0.55 -29.47 8.73 25.60 0.22 -29.24 16 6 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.02 1.21 5.29 84.66 0.45 1.66 16 8 N -0.91 -50.50 11.29 21.45 0.24 -50.26 16 9 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 N -0.67 -29.10 5.01 -447.52 -2.24 -31.34 16 14 C 0.50 19.64 6.46 87.24 0.56 20.20 16 15 O -0.54 -22.69 13.62 -3.27 -0.04 -22.74 16 16 C 0.50 17.45 7.84 87.24 0.68 18.14 16 17 O -0.47 -18.73 14.73 -3.28 -0.05 -18.78 16 18 N -0.63 -16.37 5.37 -309.83 -1.66 -18.03 16 19 C 0.34 8.11 7.42 133.03 0.99 9.09 16 20 C -0.16 -2.17 9.94 22.54 0.22 -1.94 16 21 C -0.03 -0.31 10.16 22.41 0.23 -0.08 16 22 C -0.14 -2.24 9.73 22.58 0.22 -2.02 16 23 C 0.20 4.90 6.75 41.95 0.28 5.18 16 24 C 0.21 5.46 8.03 137.36 1.10 6.56 16 25 N -0.27 -6.35 12.20 -52.20 -0.64 -6.99 16 26 N -0.05 -1.05 13.47 37.02 0.50 -0.55 16 27 N -0.21 -3.76 7.90 37.02 0.29 -3.47 16 28 H 0.49 4.31 8.96 -347.53 -3.12 1.20 16 29 N -0.28 -7.49 12.38 -52.15 -0.65 -8.13 16 30 N -0.49 -14.74 7.81 -182.12 -1.42 -16.16 16 31 H 0.04 1.64 5.64 -2.39 -0.01 1.63 16 32 H 0.04 1.72 7.85 -2.39 -0.02 1.70 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 4.22 5.95 -2.39 -0.01 4.21 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 37 H 0.41 16.81 8.01 -92.71 -0.74 16.07 16 38 H 0.44 9.05 8.18 -92.71 -0.76 8.29 16 39 H 0.18 1.02 8.06 -2.91 -0.02 0.99 16 40 H 0.20 0.03 8.06 -2.91 -0.02 0.01 16 41 H 0.17 1.93 7.87 -2.91 -0.02 1.90 16 Total: -1.00 -75.74 359.69 -1.27 -77.00 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -3.46 Total: 24.22 kcal Atomic # 6 Polarization: 25.30 SS G_CDS: 5.84 Total: 31.14 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -5.58 Total: -134.93 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.09 Total: -41.52 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -75.74 -1.27 -77.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590420433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.732 kcal (2) G-P(sol) polarization free energy of solvation -75.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds