Wall clock time and date at job start Sat Apr 11 2020 07:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38165 * 120.80468 * 2 1 4 4 C 1.39134 * 119.21937 * 179.97438 * 3 2 1 5 5 N 1.39155 * 119.56953 * 180.02562 * 4 3 2 6 6 C 1.34782 * 120.00164 * 174.91567 * 5 4 3 7 7 O 1.21365 * 119.99699 * 5.09138 * 6 5 4 8 8 C 1.49353 * 119.99938 * 185.09271 * 6 5 4 9 9 O 1.21356 * 120.00169 * 0.02562 * 8 6 5 10 10 N 1.34782 * 119.99938 * 180.02562 * 8 6 5 11 11 C 1.46497 * 120.00207 * 180.02562 * 10 8 6 12 12 H 1.08997 * 109.47108 * 34.99495 * 11 10 8 13 13 C 1.53002 * 109.46799 * 275.00053 * 11 10 8 14 14 C 1.50701 * 109.47344 * 155.00216 * 11 10 8 15 15 H 1.08004 * 119.99803 * 359.97438 * 14 11 10 16 16 C 1.37873 * 120.00084 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99770 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99988 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47380 * 89.99984 * 18 16 14 20 20 H 1.48505 * 109.46958 * 209.99509 * 18 16 14 21 21 H 1.48495 * 109.46944 * 329.99484 * 18 16 14 22 22 N 1.32449 * 120.86212 * 359.97438 * 4 3 2 23 23 C 1.31734 * 121.75195 * 0.02562 * 22 4 3 24 24 C 1.39245 * 120.69173 * 359.97438 * 23 22 4 25 25 C 1.48420 * 120.46036 * 180.02562 * 24 23 22 26 26 N 1.34064 * 126.67536 * 179.66454 * 25 24 23 27 27 N 1.28981 * 107.26546 * 179.87683 * 26 25 24 28 28 N 1.28729 * 108.94896 * 0.39395 * 27 26 25 29 29 H 0.96998 * 125.34117 * 179.75005 * 28 27 26 30 30 N 1.28880 * 109.32344 * 359.75303 * 28 27 26 31 31 H 1.08999 * 109.47214 * 89.99784 * 1 2 3 32 32 H 1.08996 * 109.47281 * 210.00280 * 1 2 3 33 33 H 1.09008 * 109.46876 * 330.00031 * 1 2 3 34 34 H 1.07996 * 120.38731 * 0.02562 * 3 2 1 35 35 H 0.97003 * 120.00623 * 354.92148 * 5 4 3 36 36 H 0.97004 * 119.99673 * 359.97438 * 10 8 6 37 37 H 1.09009 * 109.46926 * 300.00034 * 13 11 10 38 38 H 1.08998 * 109.47285 * 59.99718 * 13 11 10 39 39 H 1.09001 * 109.47015 * 180.02562 * 13 11 10 40 40 H 0.97000 * 119.99690 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.65568 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2145 1.1867 0.0000 4 6 3.6053 1.1482 0.0005 5 7 4.3253 2.3391 0.0011 6 6 5.6688 2.3143 0.1051 7 8 6.2579 1.2532 0.1051 8 6 6.4326 3.5926 0.2202 9 8 5.8434 4.6536 0.2207 10 7 7.7762 3.5679 0.3237 11 6 8.5254 4.8216 0.4372 12 1 7.9450 5.5406 1.0154 13 6 8.7899 5.3859 -0.9601 14 6 9.8379 4.5616 1.1307 15 1 10.0887 3.5624 1.4548 16 6 10.7180 5.5995 1.3522 17 7 10.4123 6.8163 0.9579 18 14 12.3445 5.2773 2.2125 19 1 13.3808 4.9429 1.2028 20 1 12.7571 6.4912 2.9618 21 1 12.1886 4.1418 3.1567 22 7 4.2530 -0.0071 0.0016 23 6 3.6150 -1.1596 0.0016 24 6 2.2231 -1.2014 0.0011 25 6 1.5095 -2.5027 0.0017 26 7 0.1817 -2.6878 0.0076 27 7 -0.0274 -3.9606 0.0033 28 7 1.1062 -4.5705 0.0033 29 1 1.2255 -5.5331 0.0040 30 7 2.0580 -3.7015 0.0025 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8901 0.5139 34 1 1.6941 2.1330 0.0004 35 1 3.8602 3.1871 -0.0733 36 1 8.2471 2.7198 0.3237 37 1 9.3703 4.6669 -1.5385 38 1 7.8407 5.5740 -1.4618 39 1 9.3477 6.3186 -0.8757 40 1 11.0317 7.5465 1.1135 41 1 4.1772 -2.0817 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605703049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:44 Heat of formation + Delta-G solvation = 110.170727 kcal Electronic energy + Delta-G solvation = -28408.424418 eV Core-core repulsion = 24134.585791 eV Total energy + Delta-G solvation = -4273.838627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.80316 -41.16623 -39.81781 -38.06262 -35.85743 -35.10705 -34.61780 -33.92063 -33.46300 -32.42762 -30.26401 -29.16481 -28.28962 -25.78833 -25.32889 -24.91467 -24.13154 -22.96897 -21.99189 -20.65882 -19.76201 -19.40420 -18.83716 -17.50311 -17.44955 -16.80461 -16.65413 -15.95237 -15.75908 -15.75202 -15.06219 -14.74274 -14.60503 -14.37313 -14.17239 -13.63546 -13.46486 -13.26821 -12.97512 -12.90613 -12.60508 -12.49835 -12.24798 -11.86345 -11.79830 -11.62579 -11.37305 -11.16236 -11.09919 -11.00390 -10.81714 -10.62567 -10.39210 -10.28417 -9.79059 -9.72957 -9.15238 -8.95931 -8.64132 -8.45192 -8.15398 -6.18392 -4.27901 0.25278 0.79327 0.97910 1.71209 1.88248 2.13302 2.41423 3.23643 3.30329 3.31443 3.33885 3.47484 3.76015 3.79605 3.84200 4.24957 4.33587 4.40255 4.62913 4.83081 4.90282 5.06222 5.09857 5.14887 5.22032 5.39108 5.42558 5.52374 5.70104 5.98354 6.04051 6.09538 6.41141 6.70288 6.81124 6.83984 7.00581 7.17450 7.32344 7.58712 7.66698 7.78747 7.80146 7.98816 8.03785 8.40999 8.58650 8.83153 9.39135 10.87621 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.001895 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.772221 B =14775.322093 C =15578.953407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.032 3.968 3 C -0.212 4.212 4 C 0.390 3.610 5 N -0.640 5.640 6 C 0.498 3.502 7 O -0.448 6.448 8 C 0.496 3.504 9 O -0.536 6.536 10 N -0.666 5.666 11 C 0.261 3.739 12 H 0.055 0.945 13 C -0.149 4.149 14 C -0.536 4.536 15 H 0.065 0.935 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.905 3.095 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 N -0.481 5.481 23 C 0.187 3.813 24 C -0.121 4.121 25 C 0.238 3.762 26 N -0.271 5.271 27 N -0.052 5.052 28 N -0.226 5.226 29 H 0.476 0.524 30 N -0.296 5.296 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.148 0.852 35 H 0.431 0.569 36 H 0.403 0.597 37 H 0.030 0.970 38 H 0.017 0.983 39 H 0.095 0.905 40 H 0.266 0.734 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.687 -18.644 -2.969 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.023 3.977 3 C -0.236 4.236 4 C 0.159 3.841 5 N -0.287 5.287 6 C 0.279 3.721 7 O -0.314 6.314 8 C 0.274 3.726 9 O -0.415 6.415 10 N -0.315 5.315 11 C 0.161 3.839 12 H 0.073 0.927 13 C -0.207 4.207 14 C -0.575 4.575 15 H 0.083 0.917 16 C -0.136 4.136 17 N -0.520 5.520 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 N -0.195 5.195 23 C 0.025 3.975 24 C -0.129 4.129 25 C -0.042 4.042 26 N -0.144 5.144 27 N -0.047 5.047 28 N -0.072 5.072 29 H 0.330 0.670 30 N -0.147 5.147 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.165 0.835 35 H 0.271 0.729 36 H 0.237 0.763 37 H 0.049 0.951 38 H 0.036 0.964 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -20.051 -18.712 -2.935 27.582 hybrid contribution 0.488 -0.469 0.357 0.765 sum -19.562 -19.181 -2.578 27.518 Atomic orbital electron populations 1.21207 0.88817 1.04882 1.03834 1.20073 0.97238 0.90382 0.90029 1.21322 0.92005 0.99666 1.10587 1.18662 0.87966 0.86452 0.91057 1.43418 1.07375 1.07876 1.70062 1.21113 0.82327 0.91250 0.77404 1.90841 1.67815 1.31507 1.41278 1.19669 0.84566 0.87909 0.80479 1.90728 1.68986 1.30942 1.50865 1.46513 1.04468 1.13369 1.67172 1.18997 0.90632 0.79811 0.94495 0.92729 1.22103 0.98658 1.03195 0.96759 1.21190 1.01645 0.95533 1.39090 0.91710 1.24879 0.98587 0.94810 0.95352 1.69891 1.36585 0.99800 1.45755 0.86385 0.82966 0.77868 0.79554 1.20449 1.21037 1.19744 1.67826 1.38605 0.96549 1.16540 1.22796 0.89431 0.95941 0.89364 1.18082 0.93625 0.87264 1.13919 1.23354 0.87850 0.92194 1.00803 1.76094 1.14355 1.05274 1.18681 1.78915 1.10328 1.01013 1.14464 1.47703 1.01179 1.12348 1.45963 0.67017 1.74966 1.18284 0.98996 1.22489 0.89943 0.87954 0.90868 0.83467 0.72939 0.76252 0.95070 0.96435 0.88696 0.92447 0.81399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.29 36.00 0.33 -0.61 16 2 C 0.03 0.30 5.94 -104.04 -0.62 -0.31 16 3 C -0.21 -2.04 9.62 -39.28 -0.38 -2.41 16 4 C 0.39 5.01 7.42 -154.83 -1.15 3.86 16 5 N -0.64 -8.64 5.37 -11.86 -0.06 -8.70 16 6 C 0.50 8.48 7.84 -11.63 -0.09 8.39 16 7 O -0.45 -8.42 14.72 5.48 0.08 -8.34 16 8 C 0.50 9.73 7.85 -11.63 -0.09 9.64 16 9 O -0.54 -11.46 16.15 5.49 0.09 -11.38 16 10 N -0.67 -14.12 5.06 -55.40 -0.28 -14.40 16 11 C 0.26 6.49 2.56 -69.08 -0.18 6.31 16 12 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 13 C -0.15 -3.58 9.26 37.16 0.34 -3.23 16 14 C -0.54 -14.04 8.73 -34.44 -0.30 -14.34 16 15 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -24.23 11.32 55.43 0.63 -23.61 16 18 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 N -0.48 -6.91 7.85 -12.13 -0.10 -7.00 16 23 C 0.19 2.17 10.86 -17.22 -0.19 1.99 16 24 C -0.12 -1.26 5.89 -104.72 -0.62 -1.88 16 25 C 0.24 2.34 7.82 -156.30 -1.22 1.12 16 26 N -0.27 -2.60 9.22 32.15 0.30 -2.31 16 27 N -0.05 -0.42 13.47 60.35 0.81 0.39 16 28 N -0.23 -1.30 7.90 60.35 0.48 -0.82 16 29 H 0.48 0.47 8.96 -340.37 -3.05 -2.58 16 30 N -0.30 -2.51 12.10 32.17 0.39 -2.12 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.84 5.29 -51.93 -0.27 0.56 16 33 H 0.07 0.41 8.10 -51.92 -0.42 -0.01 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.43 4.80 8.17 -40.82 -0.33 4.46 16 36 H 0.40 7.99 8.01 -40.82 -0.33 7.67 16 37 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 41 H 0.17 1.69 7.89 -52.49 -0.41 1.27 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -33.08 361.01 -8.26 -41.34 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.76 Total: 5.84 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -4.25 Total: 10.20 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 2.16 Total: -58.56 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.17 Total: -19.71 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.08 -8.26 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605703049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.508 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds