Wall clock time and date at job start Sat Apr 11 2020 07:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38162 * 120.80746 * 2 1 4 4 C 1.39132 * 119.22624 * 180.28655 * 3 2 1 5 5 N 1.39150 * 119.57374 * 179.73326 * 4 3 2 6 6 C 1.34784 * 120.00010 * 185.21703 * 5 4 3 7 7 O 1.21368 * 119.99564 * 5.22936 * 6 5 4 8 8 C 1.49351 * 120.00006 * 185.22019 * 6 5 4 9 9 O 1.21359 * 120.00066 * 0.02562 * 8 6 5 10 10 N 1.34781 * 120.00123 * 180.02562 * 8 6 5 11 11 C 1.46497 * 120.00430 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.46864 * 325.00089 * 11 10 8 13 13 C 1.53001 * 109.46941 * 84.99742 * 11 10 8 14 14 C 1.50695 * 109.47253 * 204.99560 * 11 10 8 15 15 H 1.08001 * 120.00050 * 334.84183 * 14 11 10 16 16 C 1.37878 * 119.99937 * 154.83788 * 14 11 10 17 17 N 1.31508 * 120.00061 * 174.92310 * 16 14 11 18 18 Si 1.86804 * 119.99688 * 354.92523 * 16 14 11 19 19 H 1.48504 * 109.47074 * 275.03927 * 18 16 14 20 20 H 1.48496 * 109.47549 * 35.04206 * 18 16 14 21 21 H 1.48506 * 109.46894 * 155.04320 * 18 16 14 22 22 N 1.32455 * 120.85111 * 359.45686 * 4 3 2 23 23 C 1.31730 * 121.75978 * 0.27443 * 22 4 3 24 24 C 1.39242 * 120.68599 * 359.97438 * 23 22 4 25 25 C 1.48427 * 120.45732 * 179.97438 * 24 23 22 26 26 N 1.34056 * 126.67413 * 179.68721 * 25 24 23 27 27 N 1.28985 * 107.26437 * 179.89431 * 26 25 24 28 28 N 1.28733 * 108.95002 * 0.37795 * 27 26 25 29 29 H 0.97001 * 125.33836 * 179.76408 * 28 27 26 30 30 N 1.28872 * 109.31880 * 359.75568 * 28 27 26 31 31 H 1.09004 * 109.46723 * 270.24947 * 1 2 3 32 32 H 1.08997 * 109.47152 * 30.25020 * 1 2 3 33 33 H 1.08996 * 109.46877 * 150.25175 * 1 2 3 34 34 H 1.08003 * 120.38480 * 0.02562 * 3 2 1 35 35 H 0.96995 * 120.00551 * 5.21866 * 5 4 3 36 36 H 0.97004 * 119.99401 * 359.97438 * 10 8 6 37 37 H 1.09003 * 109.47274 * 174.98948 * 13 11 10 38 38 H 1.09001 * 109.47477 * 294.98943 * 13 11 10 39 39 H 1.09002 * 109.47568 * 54.99080 * 13 11 10 40 40 H 0.97001 * 119.99961 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.65749 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2146 1.1867 0.0000 4 6 3.6054 1.1483 -0.0061 5 7 4.3253 2.3391 -0.0117 6 6 5.6682 2.3142 -0.1238 7 8 6.2418 1.2618 -0.3149 8 6 6.4504 3.5817 -0.0129 9 8 5.8769 4.6339 0.1785 10 7 7.7933 3.5569 -0.1255 11 6 8.5607 4.8000 -0.0162 12 1 7.9897 5.6190 -0.4537 13 6 8.8364 5.1012 1.4583 14 6 9.8677 4.6498 -0.7511 15 1 10.2967 3.6692 -0.8951 16 6 10.5158 5.7643 -1.2399 17 7 11.7031 5.6450 -1.7926 18 14 9.7072 7.4438 -1.1169 19 1 8.7965 7.6407 -2.2733 20 1 8.9297 7.5277 0.1454 21 1 10.7528 8.4983 -1.1252 22 7 4.2530 -0.0071 -0.0010 23 6 3.6150 -1.1596 0.0045 24 6 2.2232 -1.2013 0.0057 25 6 1.5096 -2.5027 0.0114 26 7 0.1818 -2.6878 0.0190 27 7 -0.0273 -3.9606 0.0195 28 7 1.1064 -4.5705 0.0206 29 1 1.2256 -5.5331 0.0245 30 7 2.0580 -3.7015 0.0156 31 1 -0.3633 0.0045 1.0277 32 1 -0.3633 0.8877 -0.5177 33 1 -0.3633 -0.8922 -0.5099 34 1 1.6942 2.1330 0.0004 35 1 3.8607 3.1871 0.0649 36 1 8.2517 2.7157 -0.2781 37 1 9.4819 5.9761 1.5360 38 1 7.8950 5.2976 1.9713 39 1 9.3289 4.2444 1.9183 40 1 12.1588 6.4290 -2.1368 41 1 4.1773 -2.0817 0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605703052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:47 Heat of formation + Delta-G solvation = 111.200741 kcal Electronic energy + Delta-G solvation = -28480.267043 eV Core-core repulsion = 24206.473080 eV Total energy + Delta-G solvation = -4273.793962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.81925 -41.21796 -39.90891 -38.19324 -35.91903 -35.20865 -34.66061 -33.94823 -33.48412 -32.42375 -30.32155 -29.96060 -28.32080 -25.87829 -25.35219 -24.95332 -24.18147 -23.00321 -22.01587 -20.61802 -19.84004 -19.45102 -18.96443 -17.52154 -17.48354 -16.94571 -16.80031 -16.24637 -15.87959 -15.74907 -15.17497 -14.78470 -14.66171 -14.40444 -14.15643 -13.69019 -13.48567 -13.32910 -13.02215 -12.96970 -12.65491 -12.62255 -12.40970 -12.27154 -11.86129 -11.67575 -11.63297 -11.46021 -11.24434 -11.12878 -10.91077 -10.66321 -10.53120 -9.96959 -9.82051 -9.75877 -9.31986 -9.07656 -8.76898 -8.48956 -8.38019 -6.27011 -4.31336 0.22364 0.77463 0.94914 1.64041 1.86840 2.08910 2.33518 3.21988 3.29254 3.30481 3.35276 3.40435 3.69227 3.71781 3.80328 4.22518 4.27543 4.37219 4.57982 4.78519 4.86301 4.92103 5.07109 5.12688 5.19522 5.35748 5.39911 5.49451 5.66717 5.95942 6.01395 6.06676 6.21190 6.36982 6.41529 6.55097 6.74116 6.77509 6.99002 7.19166 7.35976 7.54014 7.77362 7.87711 8.02424 8.37741 8.50810 8.75030 9.32151 10.84565 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.001946 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.047457 B =14386.755552 C =14992.651223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.033 3.967 3 C -0.212 4.212 4 C 0.390 3.610 5 N -0.640 5.640 6 C 0.500 3.500 7 O -0.445 6.445 8 C 0.497 3.503 9 O -0.540 6.540 10 N -0.661 5.661 11 C 0.232 3.768 12 H 0.052 0.948 13 C -0.152 4.152 14 C -0.536 4.536 15 H 0.082 0.918 16 C 0.082 3.918 17 N -0.885 5.885 18 Si 0.872 3.128 19 H -0.272 1.272 20 H -0.257 1.257 21 H -0.285 1.285 22 N -0.482 5.482 23 C 0.188 3.812 24 C -0.120 4.120 25 C 0.237 3.763 26 N -0.271 5.271 27 N -0.052 5.052 28 N -0.225 5.225 29 H 0.476 0.524 30 N -0.295 5.295 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.147 0.853 35 H 0.431 0.569 36 H 0.408 0.592 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.049 0.951 40 H 0.269 0.731 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.065 -16.552 4.513 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.023 3.977 3 C -0.236 4.236 4 C 0.159 3.841 5 N -0.288 5.288 6 C 0.280 3.720 7 O -0.311 6.311 8 C 0.275 3.725 9 O -0.419 6.419 10 N -0.310 5.310 11 C 0.131 3.869 12 H 0.070 0.930 13 C -0.211 4.211 14 C -0.574 4.574 15 H 0.100 0.900 16 C -0.123 4.123 17 N -0.521 5.521 18 Si 0.698 3.302 19 H -0.198 1.198 20 H -0.181 1.181 21 H -0.210 1.210 22 N -0.196 5.196 23 C 0.025 3.975 24 C -0.128 4.128 25 C -0.043 4.043 26 N -0.144 5.144 27 N -0.047 5.047 28 N -0.072 5.072 29 H 0.330 0.670 30 N -0.147 5.147 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.165 0.835 35 H 0.270 0.730 36 H 0.244 0.756 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -23.328 -16.731 4.425 29.047 hybrid contribution -0.660 0.554 -0.059 0.864 sum -23.988 -16.177 4.366 29.261 Atomic orbital electron populations 1.21202 0.88795 1.04871 1.03837 1.20077 0.97251 0.90380 0.90008 1.21313 0.91985 0.99664 1.10601 1.18631 0.87946 0.86421 0.91127 1.43390 1.07315 1.07907 1.70167 1.20975 0.82389 0.90879 0.77733 1.90854 1.68797 1.31629 1.39867 1.19764 0.84518 0.87961 0.80252 1.90719 1.69995 1.31303 1.49884 1.46442 1.04398 1.13924 1.66237 1.19285 0.91476 0.82248 0.93934 0.92987 1.22317 0.99423 1.01423 0.97921 1.20963 1.03291 0.96261 1.36843 0.89965 1.24873 0.94566 0.99047 0.93788 1.69873 1.13077 1.30743 1.38422 0.86966 0.79571 0.83736 0.79960 1.19789 1.18145 1.21038 1.67780 1.38707 0.96577 1.16526 1.22788 0.89441 0.95903 0.89325 1.18083 0.93622 0.87282 1.13795 1.23346 0.87859 0.92187 1.00871 1.76097 1.14347 1.05294 1.18663 1.78919 1.10324 1.00994 1.14472 1.47705 1.01171 1.12359 1.45921 0.66992 1.74964 1.18296 0.98990 1.22435 0.89914 0.90881 0.87976 0.83489 0.72967 0.75612 0.92128 0.95033 0.93170 0.92121 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.27 36.01 0.33 -0.58 16 2 C 0.03 0.30 5.94 -104.04 -0.62 -0.32 16 3 C -0.21 -1.96 9.63 -39.28 -0.38 -2.34 16 4 C 0.39 4.86 7.40 -154.83 -1.15 3.71 16 5 N -0.64 -8.30 5.37 -11.86 -0.06 -8.37 16 6 C 0.50 8.21 7.83 -11.63 -0.09 8.12 16 7 O -0.45 -8.20 14.76 5.48 0.08 -8.12 16 8 C 0.50 9.29 7.85 -11.63 -0.09 9.20 16 9 O -0.54 -10.84 16.15 5.49 0.09 -10.75 16 10 N -0.66 -13.42 5.06 -55.40 -0.28 -13.70 16 11 C 0.23 5.37 2.12 -69.09 -0.15 5.23 16 12 H 0.05 1.28 5.34 -51.93 -0.28 1.00 16 13 C -0.15 -3.23 9.10 37.16 0.34 -2.89 16 14 C -0.54 -14.18 9.06 -34.44 -0.31 -14.50 16 15 H 0.08 2.32 8.02 -52.49 -0.42 1.90 16 16 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 17 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 18 Si 0.87 20.68 26.20 -169.99 -4.45 16.23 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.26 -5.87 6.15 56.52 0.35 -5.52 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 N -0.48 -6.77 7.89 -12.14 -0.10 -6.86 16 23 C 0.19 2.14 10.86 -17.22 -0.19 1.95 16 24 C -0.12 -1.22 5.89 -104.72 -0.62 -1.84 16 25 C 0.24 2.29 7.82 -156.30 -1.22 1.07 16 26 N -0.27 -2.56 9.23 32.15 0.30 -2.26 16 27 N -0.05 -0.41 13.47 60.35 0.81 0.40 16 28 N -0.23 -1.27 7.90 60.35 0.48 -0.79 16 29 H 0.48 0.43 8.96 -340.36 -3.05 -2.63 16 30 N -0.30 -2.46 12.10 32.17 0.39 -2.07 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 33 H 0.10 0.81 5.31 -51.93 -0.28 0.54 16 34 H 0.15 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.43 4.52 8.17 -40.82 -0.33 4.19 16 36 H 0.41 7.91 8.03 -40.82 -0.33 7.58 16 37 H 0.06 1.30 6.74 -51.93 -0.35 0.95 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.17 1.66 7.89 -52.48 -0.41 1.25 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -34.04 358.06 -7.56 -41.60 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.75 Total: 5.27 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -4.23 Total: 8.96 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 2.31 Total: -58.59 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.17 Total: -18.87 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.45 Total: 16.23 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.04 -7.56 -41.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605703052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.801 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds