Wall clock time and date at job start Sat Apr 11 2020 07:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38162 * 120.80746 * 2 1 4 4 C 1.39132 * 119.22624 * 180.28655 * 3 2 1 5 5 N 1.39150 * 119.57374 * 179.73326 * 4 3 2 6 6 C 1.34784 * 120.00010 * 185.21703 * 5 4 3 7 7 O 1.21368 * 119.99564 * 5.22936 * 6 5 4 8 8 C 1.49351 * 120.00006 * 185.22019 * 6 5 4 9 9 O 1.21359 * 120.00066 * 0.02562 * 8 6 5 10 10 N 1.34781 * 120.00123 * 180.02562 * 8 6 5 11 11 C 1.46497 * 120.00430 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.46864 * 325.00089 * 11 10 8 13 13 C 1.53001 * 109.46941 * 84.99742 * 11 10 8 14 14 C 1.50695 * 109.47253 * 204.99560 * 11 10 8 15 15 H 1.08001 * 120.00050 * 334.84183 * 14 11 10 16 16 C 1.37878 * 119.99937 * 154.83788 * 14 11 10 17 17 N 1.31508 * 120.00061 * 174.92310 * 16 14 11 18 18 Si 1.86804 * 119.99688 * 354.92523 * 16 14 11 19 19 H 1.48504 * 109.47074 * 275.03927 * 18 16 14 20 20 H 1.48496 * 109.47549 * 35.04206 * 18 16 14 21 21 H 1.48506 * 109.46894 * 155.04320 * 18 16 14 22 22 N 1.32455 * 120.85111 * 359.45686 * 4 3 2 23 23 C 1.31730 * 121.75978 * 0.27443 * 22 4 3 24 24 C 1.39242 * 120.68599 * 359.97438 * 23 22 4 25 25 C 1.48427 * 120.45732 * 179.97438 * 24 23 22 26 26 N 1.34056 * 126.67413 * 179.68721 * 25 24 23 27 27 N 1.28985 * 107.26437 * 179.89431 * 26 25 24 28 28 N 1.28733 * 108.95002 * 0.37795 * 27 26 25 29 29 H 0.97001 * 125.33836 * 179.76408 * 28 27 26 30 30 N 1.28872 * 109.31880 * 359.75568 * 28 27 26 31 31 H 1.09004 * 109.46723 * 270.24947 * 1 2 3 32 32 H 1.08997 * 109.47152 * 30.25020 * 1 2 3 33 33 H 1.08996 * 109.46877 * 150.25175 * 1 2 3 34 34 H 1.08003 * 120.38480 * 0.02562 * 3 2 1 35 35 H 0.96995 * 120.00551 * 5.21866 * 5 4 3 36 36 H 0.97004 * 119.99401 * 359.97438 * 10 8 6 37 37 H 1.09003 * 109.47274 * 174.98948 * 13 11 10 38 38 H 1.09001 * 109.47477 * 294.98943 * 13 11 10 39 39 H 1.09002 * 109.47568 * 54.99080 * 13 11 10 40 40 H 0.97001 * 119.99961 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.65749 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2146 1.1867 0.0000 4 6 3.6054 1.1483 -0.0061 5 7 4.3253 2.3391 -0.0117 6 6 5.6682 2.3142 -0.1238 7 8 6.2418 1.2618 -0.3149 8 6 6.4504 3.5817 -0.0129 9 8 5.8769 4.6339 0.1785 10 7 7.7933 3.5569 -0.1255 11 6 8.5607 4.8000 -0.0162 12 1 7.9897 5.6190 -0.4537 13 6 8.8364 5.1012 1.4583 14 6 9.8677 4.6498 -0.7511 15 1 10.2967 3.6692 -0.8951 16 6 10.5158 5.7643 -1.2399 17 7 11.7031 5.6450 -1.7926 18 14 9.7072 7.4438 -1.1169 19 1 8.7965 7.6407 -2.2733 20 1 8.9297 7.5277 0.1454 21 1 10.7528 8.4983 -1.1252 22 7 4.2530 -0.0071 -0.0010 23 6 3.6150 -1.1596 0.0045 24 6 2.2232 -1.2013 0.0057 25 6 1.5096 -2.5027 0.0114 26 7 0.1818 -2.6878 0.0190 27 7 -0.0273 -3.9606 0.0195 28 7 1.1064 -4.5705 0.0206 29 1 1.2256 -5.5331 0.0245 30 7 2.0580 -3.7015 0.0156 31 1 -0.3633 0.0045 1.0277 32 1 -0.3633 0.8877 -0.5177 33 1 -0.3633 -0.8922 -0.5099 34 1 1.6942 2.1330 0.0004 35 1 3.8607 3.1871 0.0649 36 1 8.2517 2.7157 -0.2781 37 1 9.4819 5.9761 1.5360 38 1 7.8950 5.2976 1.9713 39 1 9.3289 4.2444 1.9183 40 1 12.1588 6.4290 -2.1368 41 1 4.1773 -2.0817 0.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605703052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:47 Heat of formation + Delta-G solvation = 84.751917 kcal Electronic energy + Delta-G solvation = -28481.413950 eV Core-core repulsion = 24206.473080 eV Total energy + Delta-G solvation = -4274.940869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.45323 -42.28075 -41.10885 -39.56898 -37.19211 -36.55708 -35.53024 -34.71876 -34.41217 -34.16209 -31.78409 -31.11682 -29.00689 -27.33771 -26.90404 -25.77615 -25.04479 -23.87684 -23.09448 -21.95071 -21.28474 -20.36774 -20.10617 -18.77899 -18.44254 -18.14326 -17.55010 -17.50524 -17.29393 -17.05837 -16.66112 -15.91104 -15.73645 -15.48626 -15.15357 -14.97133 -14.86568 -14.54972 -14.25968 -14.13170 -13.80611 -13.67285 -13.37763 -13.32745 -13.12428 -12.92007 -12.85790 -12.71078 -12.59112 -12.33234 -12.32574 -11.81434 -11.76647 -11.58209 -11.29714 -11.01570 -10.83624 -10.48763 -10.27062 -10.07783 -9.36338 -8.37289 -6.45691 -0.61659 0.10970 0.19653 0.41004 1.12863 1.25985 1.35678 1.38612 1.43306 1.48568 2.11942 2.29591 2.43860 2.65919 2.75748 2.99334 3.11296 3.28806 3.49481 3.66326 3.78932 4.10440 4.15870 4.40060 4.40583 4.52019 4.70234 4.71270 4.74812 4.76029 4.85729 4.91017 5.01528 5.22475 5.26026 5.39579 5.43315 5.51000 5.60327 5.62927 5.74860 6.02891 6.40171 6.56057 6.68353 6.94363 7.00701 7.13288 7.22225 8.77725 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.001946 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.047457 B =14386.755552 C =14992.651223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.031 3.969 3 C -0.191 4.191 4 C 0.362 3.638 5 N -0.625 5.625 6 C 0.509 3.491 7 O -0.472 6.472 8 C 0.501 3.499 9 O -0.550 6.550 10 N -0.669 5.669 11 C 0.237 3.763 12 H 0.043 0.957 13 C -0.147 4.147 14 C -0.536 4.536 15 H 0.051 0.949 16 C 0.030 3.970 17 N -0.931 5.931 18 Si 0.929 3.071 19 H -0.271 1.271 20 H -0.240 1.240 21 H -0.279 1.279 22 N -0.518 5.518 23 C 0.174 3.826 24 C -0.113 4.113 25 C 0.223 3.777 26 N -0.281 5.281 27 N -0.057 5.057 28 N -0.199 5.199 29 H 0.494 0.506 30 N -0.299 5.299 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.182 0.818 35 H 0.442 0.558 36 H 0.411 0.589 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.271 0.729 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.222 -16.464 5.269 32.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.021 3.979 3 C -0.213 4.213 4 C 0.132 3.868 5 N -0.274 5.274 6 C 0.289 3.711 7 O -0.340 6.340 8 C 0.281 3.719 9 O -0.429 6.429 10 N -0.319 5.319 11 C 0.134 3.866 12 H 0.061 0.939 13 C -0.205 4.205 14 C -0.574 4.574 15 H 0.069 0.931 16 C -0.171 4.171 17 N -0.569 5.569 18 Si 0.753 3.247 19 H -0.197 1.197 20 H -0.163 1.163 21 H -0.205 1.205 22 N -0.233 5.233 23 C 0.013 3.987 24 C -0.120 4.120 25 C -0.057 4.057 26 N -0.153 5.153 27 N -0.051 5.051 28 N -0.050 5.050 29 H 0.353 0.647 30 N -0.152 5.152 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.199 0.801 35 H 0.284 0.716 36 H 0.247 0.753 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -26.559 -16.684 5.198 31.792 hybrid contribution 0.195 0.281 -0.294 0.451 sum -26.364 -16.403 4.904 31.435 Atomic orbital electron populations 1.21228 0.86921 1.05525 1.04545 1.20397 0.98453 0.89842 0.89228 1.21591 0.90464 1.01210 1.08057 1.18819 0.88996 0.85667 0.93307 1.43136 1.05915 1.09001 1.69338 1.20387 0.83448 0.89281 0.77956 1.90854 1.69597 1.31911 1.41684 1.20053 0.83896 0.88800 0.79140 1.90701 1.70101 1.32072 1.50074 1.46235 1.05236 1.13124 1.67261 1.19063 0.89884 0.83074 0.94605 0.93867 1.22217 1.00189 1.01602 0.96539 1.21146 1.04610 0.94951 1.36707 0.93069 1.25659 0.94935 1.02865 0.93614 1.69994 1.14721 1.31954 1.40222 0.86038 0.78840 0.79272 0.80585 1.19655 1.16345 1.20465 1.67625 1.40446 0.97732 1.17493 1.22838 0.90181 0.95441 0.90243 1.18199 0.93260 0.88220 1.12312 1.23307 0.88118 0.92318 1.02001 1.76101 1.14170 1.05920 1.19113 1.78875 1.10805 1.00750 1.14705 1.47765 1.00198 1.13140 1.43905 0.64691 1.74936 1.18943 0.99085 1.22219 0.89017 0.88726 0.88805 0.80064 0.71575 0.75330 0.92423 0.93514 0.92522 0.91944 0.80886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.27 71.24 0.66 -0.72 16 2 C 0.03 0.48 5.94 -19.49 -0.12 0.37 16 3 C -0.19 -3.01 9.63 22.47 0.22 -2.80 16 4 C 0.36 8.55 7.40 133.00 0.98 9.53 16 5 N -0.62 -15.38 5.37 -309.77 -1.66 -17.04 16 6 C 0.51 16.51 7.83 87.24 0.68 17.19 16 7 O -0.47 -17.56 14.76 -3.30 -0.05 -17.61 16 8 C 0.50 18.41 7.85 87.24 0.68 19.10 16 9 O -0.55 -21.25 16.15 -3.28 -0.05 -21.31 16 10 N -0.67 -27.19 5.06 -447.53 -2.27 -29.46 16 11 C 0.24 10.85 2.12 44.24 0.09 10.95 16 12 H 0.04 2.07 5.34 -2.39 -0.01 2.06 16 13 C -0.15 -6.04 9.10 71.98 0.66 -5.38 16 14 C -0.54 -28.92 9.06 25.60 0.23 -28.69 16 15 H 0.05 3.01 8.02 -2.91 -0.02 2.99 16 16 C 0.03 1.65 5.47 84.66 0.46 2.11 16 17 N -0.93 -55.30 13.96 21.45 0.30 -55.00 16 18 Si 0.93 42.37 26.20 68.60 1.80 44.17 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.24 -10.21 6.15 99.48 0.61 -9.60 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 N -0.52 -14.45 7.89 -192.31 -1.52 -15.97 16 23 C 0.17 3.92 10.86 84.95 0.92 4.84 16 24 C -0.11 -2.15 5.89 -19.93 -0.12 -2.27 16 25 C 0.22 3.98 7.82 137.36 1.07 5.05 16 26 N -0.28 -4.81 9.23 -52.19 -0.48 -5.29 16 27 N -0.06 -0.80 13.47 37.02 0.50 -0.30 16 28 N -0.20 -1.88 7.90 37.02 0.29 -1.58 16 29 H 0.49 -0.14 8.96 -347.53 -3.12 -3.25 16 30 N -0.30 -4.56 12.10 -52.14 -0.63 -5.19 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.65 8.10 -2.39 -0.02 0.63 16 33 H 0.09 1.27 5.31 -2.39 -0.01 1.26 16 34 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.44 8.37 8.17 -92.71 -0.76 7.62 16 36 H 0.41 16.30 8.03 -92.71 -0.74 15.56 16 37 H 0.06 2.38 6.74 -2.39 -0.02 2.36 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.17 3.47 7.89 -2.91 -0.02 3.44 16 Total: -1.00 -73.95 358.06 -0.89 -74.84 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -3.55 Total: 20.45 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 6.44 Total: 29.29 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -5.47 Total: -129.84 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.10 Total: -38.92 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.80 Total: 44.17 kcal Total: -73.95 -0.89 -74.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605703052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.591 kcal (2) G-P(sol) polarization free energy of solvation -73.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds