Wall clock time and date at job start Sat Apr 11 2020 07:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.28057 * 124.24657 * 2 1 4 4 C 1.34409 * 117.92038 * 180.02562 * 3 2 1 5 5 C 1.41244 * 129.48173 * 180.02562 * 4 3 2 6 6 C 1.35755 * 120.63149 * 179.73530 * 5 4 3 7 7 C 1.40196 * 120.61989 * 0.52229 * 6 5 4 8 8 C 1.47591 * 120.13102 * 179.75714 * 7 6 5 9 9 O 1.21592 * 119.99479 * 6.96804 * 8 7 6 10 10 N 1.34773 * 119.99807 * 186.97089 * 8 7 6 11 11 C 1.47015 * 125.65475 * 354.31180 * 10 8 7 12 12 C 1.54366 * 107.29139 * 181.05740 * 11 10 8 13 13 C 1.55149 * 102.92015 * 22.13673 * 12 11 10 14 14 H 1.09005 * 111.00256 * 82.64377 * 13 12 11 15 15 C 1.53005 * 111.00678 * 206.45342 * 13 12 11 16 16 N 1.46499 * 109.47268 * 181.82213 * 15 13 12 17 17 C 1.36932 * 120.00052 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00236 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00038 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00148 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99743 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46983 * 269.99488 * 21 19 17 23 23 H 1.48497 * 109.47476 * 29.99549 * 21 19 17 24 24 H 1.48500 * 109.47405 * 150.00160 * 21 19 17 25 25 C 1.47428 * 125.64205 * 174.26948 * 10 8 7 26 26 C 1.39183 * 119.74284 * 359.48142 * 7 6 5 27 27 C 1.38912 * 119.84745 * 0.25621 * 26 7 6 28 28 S 1.70653 * 124.23892 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47412 * 90.02586 * 1 2 3 30 30 H 1.08999 * 109.47499 * 210.02155 * 1 2 3 31 31 H 1.08999 * 109.47375 * 330.02435 * 1 2 3 32 32 H 1.07999 * 119.68469 * 0.02562 * 5 4 3 33 33 H 1.08003 * 119.68884 * 180.27932 * 6 5 4 34 34 H 1.08993 * 109.88211 * 300.44655 * 11 10 8 35 35 H 1.09006 * 109.87654 * 61.44908 * 11 10 8 36 36 H 1.09008 * 110.70474 * 263.79500 * 12 11 10 37 37 H 1.09001 * 110.75564 * 140.50634 * 12 11 10 38 38 H 1.09000 * 109.46800 * 61.82155 * 15 13 12 39 39 H 1.09003 * 109.46893 * 301.81946 * 15 13 12 40 40 H 0.97005 * 119.99856 * 0.02562 * 16 15 13 41 41 H 0.97005 * 119.99859 * 0.02562 * 20 19 17 42 42 H 1.09001 * 110.36819 * 37.06951 * 25 10 8 43 43 H 1.09000 * 110.46098 * 274.79163 * 25 10 8 44 44 H 1.07997 * 120.07639 * 180.27009 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2275 1.0585 0.0000 4 6 3.5634 0.9104 -0.0005 5 6 4.5762 1.8950 -0.0002 6 6 5.8864 1.5396 0.0046 7 6 6.2597 0.1883 -0.0018 8 6 7.6874 -0.1859 -0.0020 9 8 8.5403 0.6705 0.1311 10 7 8.0457 -1.4767 -0.1497 11 6 7.1244 -2.6212 -0.2013 12 6 7.9832 -3.8950 -0.3521 13 6 9.3662 -3.4472 0.1899 14 1 9.3974 -3.5069 1.2779 15 6 10.4934 -4.2725 -0.4342 16 7 11.7775 -3.8524 0.1321 17 6 12.9366 -4.4551 -0.2780 18 1 12.9043 -5.2399 -1.0192 19 6 14.1533 -4.0573 0.2590 20 7 14.1929 -3.1006 1.1619 21 14 15.7346 -4.8791 -0.3010 22 1 16.0175 -6.0510 0.5662 23 1 15.5872 -5.3289 -1.7085 24 1 16.8564 -3.9107 -0.2057 25 6 9.4265 -1.9747 -0.2873 26 6 5.2788 -0.7991 -0.0022 27 6 3.9368 -0.4404 -0.0016 28 16 2.4671 -1.4108 -0.0006 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 4.3056 2.9406 0.0011 33 1 6.6483 2.3051 0.0093 34 1 6.5450 -2.6725 0.7204 35 1 6.4543 -2.5194 -1.0550 36 1 8.0562 -4.1889 -1.3993 37 1 7.5776 -4.7079 0.2503 38 1 10.5035 -4.1164 -1.5129 39 1 10.3307 -5.3291 -0.2213 40 1 11.8065 -3.1477 0.7982 41 1 13.3717 -2.6736 1.4525 42 1 10.1023 -1.3984 0.3446 43 1 9.7472 -1.9260 -1.3279 44 1 5.5604 -1.8417 -0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662706473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:18 Heat of formation + Delta-G solvation = 59.478712 kcal Electronic energy + Delta-G solvation = -26622.023716 eV Core-core repulsion = 22859.987382 eV Total energy + Delta-G solvation = -3762.036334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14513 -40.06339 -37.96775 -37.02618 -35.05115 -32.88240 -32.04960 -31.53323 -30.47577 -29.18886 -28.48233 -25.65510 -24.33624 -24.30163 -22.93341 -22.11463 -21.47691 -20.42048 -20.09561 -18.54698 -17.87534 -17.17985 -16.67192 -16.33455 -15.75256 -15.59593 -15.41284 -14.95944 -14.67471 -14.37089 -13.97568 -13.90557 -13.70203 -13.57994 -13.57420 -13.26986 -13.07562 -12.96907 -12.73885 -12.57666 -12.21866 -11.93804 -11.79340 -11.32097 -10.99943 -10.82147 -10.66836 -10.62491 -10.58703 -10.43982 -10.15369 -10.00666 -9.99415 -9.17492 -9.07519 -8.89425 -8.72773 -8.57769 -7.01972 -6.10025 -3.10693 -0.27524 0.73791 0.73916 1.21943 1.58569 2.71100 2.78935 3.36955 3.43817 3.52012 3.57179 3.71388 4.04076 4.16802 4.38310 4.44592 4.59581 4.70030 4.74297 4.75333 4.78134 4.85303 4.88086 5.02867 5.10966 5.18254 5.29770 5.35833 5.42702 5.59482 5.61373 5.69724 5.73281 5.78518 5.82664 5.86019 5.91003 6.09135 6.18672 6.19897 6.29569 6.56753 6.68850 7.13548 7.35913 7.80167 8.00349 8.75918 9.22008 10.08434 10.22515 11.38374 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.002024 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.762483 B =13828.305478 C =14718.896931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.095 3.905 3 N -0.472 5.472 4 C 0.104 3.896 5 C -0.074 4.074 6 C -0.052 4.052 7 C -0.108 4.108 8 C 0.571 3.429 9 O -0.527 6.527 10 N -0.611 5.611 11 C 0.088 3.912 12 C -0.127 4.127 13 C -0.107 4.107 14 H 0.085 0.915 15 C 0.171 3.829 16 N -0.744 5.744 17 C -0.335 4.335 18 H 0.065 0.935 19 C -0.045 4.045 20 N -0.942 5.942 21 Si 1.083 2.917 22 H -0.295 1.295 23 H -0.295 1.295 24 H -0.288 1.288 25 C 0.115 3.885 26 C -0.071 4.071 27 C -0.195 4.195 28 S 0.108 5.892 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.023 0.977 39 H 0.026 0.974 40 H 0.367 0.633 41 H 0.256 0.744 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.271 3.612 -3.204 31.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.189 4.189 3 N -0.187 5.187 4 C -0.017 4.017 5 C -0.095 4.095 6 C -0.073 4.073 7 C -0.115 4.115 8 C 0.360 3.640 9 O -0.404 6.404 10 N -0.344 5.344 11 C -0.035 4.035 12 C -0.165 4.165 13 C -0.127 4.127 14 H 0.104 0.896 15 C 0.043 3.957 16 N -0.390 5.390 17 C -0.466 4.466 18 H 0.083 0.917 19 C -0.243 4.243 20 N -0.587 5.587 21 Si 0.914 3.086 22 H -0.223 1.223 23 H -0.222 1.222 24 H -0.214 1.214 25 C -0.006 4.006 26 C -0.093 4.093 27 C -0.313 4.313 28 S 0.364 5.636 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.041 0.959 39 H 0.044 0.956 40 H 0.201 0.799 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -29.748 3.393 -3.111 30.102 hybrid contribution -1.188 0.888 -0.023 1.483 sum -30.935 4.281 -3.134 31.387 Atomic orbital electron populations 1.20602 0.84610 1.04766 1.04479 1.26861 1.01968 0.90879 0.99181 1.66153 1.04161 1.31310 1.17063 1.19365 0.89109 0.91864 1.01399 1.20317 0.90025 0.98759 1.00354 1.20816 0.95952 0.95411 0.95147 1.19896 0.92676 0.94149 1.04752 1.17701 0.87824 0.81205 0.77264 1.90835 1.51757 1.48347 1.49504 1.48421 1.09248 1.05105 1.71619 1.22558 0.93277 0.86621 1.01034 1.22731 0.94986 0.95891 1.02900 1.22623 0.94859 0.93977 1.01224 0.89648 1.20518 0.84360 0.95303 0.95531 1.42375 1.01632 1.45025 1.49978 1.20033 0.86668 1.17595 1.22263 0.91693 1.25796 1.00586 0.99584 0.98299 1.70847 1.29726 1.25962 1.32208 0.83188 0.75448 0.75159 0.74772 1.22320 1.22158 1.21356 1.22393 0.81691 0.94318 1.02210 1.22057 0.89000 1.02457 0.95804 1.23754 0.98857 0.96705 1.12009 1.83970 0.95400 1.10270 1.73997 0.88936 0.89526 0.88810 0.84048 0.83268 0.90549 0.90522 0.89897 0.89580 0.95876 0.95649 0.79940 0.93314 0.89695 0.90650 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.44 36.00 0.38 0.04 16 2 C 0.09 0.76 7.29 -13.86 -0.10 0.66 16 3 N -0.47 -5.08 10.56 -8.96 -0.09 -5.17 16 4 C 0.10 1.17 7.00 -84.88 -0.59 0.58 16 5 C -0.07 -0.76 10.03 -39.33 -0.39 -1.16 16 6 C -0.05 -0.58 9.49 -39.74 -0.38 -0.96 16 7 C -0.11 -1.33 5.87 -105.00 -0.62 -1.95 16 8 C 0.57 8.64 7.80 -12.45 -0.10 8.54 16 9 O -0.53 -9.92 16.59 5.28 0.09 -9.84 16 10 N -0.61 -8.41 3.33 -176.34 -0.59 -9.00 16 11 C 0.09 0.86 4.87 -3.05 -0.01 0.85 16 12 C -0.13 -1.31 6.42 -24.88 -0.16 -1.47 16 13 C -0.11 -1.59 3.07 -88.47 -0.27 -1.86 16 14 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.17 3.25 5.71 -4.04 -0.02 3.23 16 16 N -0.74 -18.52 5.49 -59.91 -0.33 -18.85 16 17 C -0.33 -9.45 9.99 -15.06 -0.15 -9.60 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 20 N -0.94 -29.51 13.70 55.49 0.76 -28.75 16 21 Si 1.08 26.14 29.92 -169.99 -5.09 21.06 16 22 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 C 0.12 1.85 6.26 -2.53 -0.02 1.83 16 26 C -0.07 -0.74 8.64 -38.98 -0.34 -1.08 16 27 C -0.19 -2.02 6.54 -38.61 -0.25 -2.27 16 28 S 0.11 0.82 23.11 -107.50 -2.48 -1.66 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.15 1.61 7.65 -52.48 -0.40 1.21 16 34 H 0.08 0.64 6.73 -51.93 -0.35 0.29 16 35 H 0.08 0.62 6.74 -51.93 -0.35 0.27 16 36 H 0.08 0.81 8.04 -51.92 -0.42 0.39 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.45 8.03 -51.93 -0.42 0.03 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.37 9.44 6.46 -40.82 -0.26 9.17 16 41 H 0.26 7.90 6.77 -40.82 -0.28 7.63 16 42 H 0.08 1.58 7.99 -51.93 -0.41 1.17 16 43 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 44 H 0.17 1.44 2.73 -58.49 -0.16 1.28 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -35.95 372.77 -10.87 -46.82 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.63 Total: 5.81 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.12 Total: -6.04 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.25 Total: -61.77 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.09 Total: 21.06 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.48 Total: -1.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.95 -10.87 -46.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662706473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.296 kcal (2) G-P(sol) polarization free energy of solvation -35.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds