Wall clock time and date at job start Sat Apr 11 2020 07:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 N 1.28057 * 124.24657 * 2 1 4 4 C 1.34409 * 117.92038 * 180.02562 * 3 2 1 5 5 C 1.41244 * 129.48173 * 180.02562 * 4 3 2 6 6 C 1.35755 * 120.63149 * 179.73530 * 5 4 3 7 7 C 1.40196 * 120.61989 * 0.52229 * 6 5 4 8 8 C 1.47591 * 120.13102 * 179.75714 * 7 6 5 9 9 O 1.21592 * 119.99479 * 6.96804 * 8 7 6 10 10 N 1.34773 * 119.99807 * 186.97089 * 8 7 6 11 11 C 1.47015 * 125.65475 * 354.31180 * 10 8 7 12 12 C 1.54366 * 107.29139 * 181.05740 * 11 10 8 13 13 C 1.55149 * 102.92015 * 22.13673 * 12 11 10 14 14 H 1.09005 * 111.00256 * 82.64377 * 13 12 11 15 15 C 1.53005 * 111.00678 * 206.45342 * 13 12 11 16 16 N 1.46499 * 109.47268 * 181.82213 * 15 13 12 17 17 C 1.36932 * 120.00052 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00236 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00038 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00148 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99743 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46983 * 269.99488 * 21 19 17 23 23 H 1.48497 * 109.47476 * 29.99549 * 21 19 17 24 24 H 1.48500 * 109.47405 * 150.00160 * 21 19 17 25 25 C 1.47428 * 125.64205 * 174.26948 * 10 8 7 26 26 C 1.39183 * 119.74284 * 359.48142 * 7 6 5 27 27 C 1.38912 * 119.84745 * 0.25621 * 26 7 6 28 28 S 1.70653 * 124.23892 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47412 * 90.02586 * 1 2 3 30 30 H 1.08999 * 109.47499 * 210.02155 * 1 2 3 31 31 H 1.08999 * 109.47375 * 330.02435 * 1 2 3 32 32 H 1.07999 * 119.68469 * 0.02562 * 5 4 3 33 33 H 1.08003 * 119.68884 * 180.27932 * 6 5 4 34 34 H 1.08993 * 109.88211 * 300.44655 * 11 10 8 35 35 H 1.09006 * 109.87654 * 61.44908 * 11 10 8 36 36 H 1.09008 * 110.70474 * 263.79500 * 12 11 10 37 37 H 1.09001 * 110.75564 * 140.50634 * 12 11 10 38 38 H 1.09000 * 109.46800 * 61.82155 * 15 13 12 39 39 H 1.09003 * 109.46893 * 301.81946 * 15 13 12 40 40 H 0.97005 * 119.99856 * 0.02562 * 16 15 13 41 41 H 0.97005 * 119.99859 * 0.02562 * 20 19 17 42 42 H 1.09001 * 110.36819 * 37.06951 * 25 10 8 43 43 H 1.09000 * 110.46098 * 274.79163 * 25 10 8 44 44 H 1.07997 * 120.07639 * 180.27009 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2275 1.0585 0.0000 4 6 3.5634 0.9104 -0.0005 5 6 4.5762 1.8950 -0.0002 6 6 5.8864 1.5396 0.0046 7 6 6.2597 0.1883 -0.0018 8 6 7.6874 -0.1859 -0.0020 9 8 8.5403 0.6705 0.1311 10 7 8.0457 -1.4767 -0.1497 11 6 7.1244 -2.6212 -0.2013 12 6 7.9832 -3.8950 -0.3521 13 6 9.3662 -3.4472 0.1899 14 1 9.3974 -3.5069 1.2779 15 6 10.4934 -4.2725 -0.4342 16 7 11.7775 -3.8524 0.1321 17 6 12.9366 -4.4551 -0.2780 18 1 12.9043 -5.2399 -1.0192 19 6 14.1533 -4.0573 0.2590 20 7 14.1929 -3.1006 1.1619 21 14 15.7346 -4.8791 -0.3010 22 1 16.0175 -6.0510 0.5662 23 1 15.5872 -5.3289 -1.7085 24 1 16.8564 -3.9107 -0.2057 25 6 9.4265 -1.9747 -0.2873 26 6 5.2788 -0.7991 -0.0022 27 6 3.9368 -0.4404 -0.0016 28 16 2.4671 -1.4108 -0.0006 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 4.3056 2.9406 0.0011 33 1 6.6483 2.3051 0.0093 34 1 6.5450 -2.6725 0.7204 35 1 6.4543 -2.5194 -1.0550 36 1 8.0562 -4.1889 -1.3993 37 1 7.5776 -4.7079 0.2503 38 1 10.5035 -4.1164 -1.5129 39 1 10.3307 -5.3291 -0.2213 40 1 11.8065 -3.1477 0.7982 41 1 13.3717 -2.6736 1.4525 42 1 10.1023 -1.3984 0.3446 43 1 9.7472 -1.9260 -1.3279 44 1 5.5604 -1.8417 -0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662706473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:17 Heat of formation + Delta-G solvation = 35.455223 kcal Electronic energy + Delta-G solvation = -26623.065453 eV Core-core repulsion = 22859.987382 eV Total energy + Delta-G solvation = -3763.078071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04590 -41.00559 -39.11867 -37.91721 -36.83297 -34.34253 -32.77549 -32.53534 -31.88575 -30.18534 -29.50415 -27.05465 -25.70411 -25.11408 -24.45256 -23.19245 -22.25342 -21.52025 -21.21295 -19.44182 -19.24488 -18.72092 -17.77881 -17.33852 -16.62609 -16.50182 -16.33554 -16.18928 -16.03440 -15.81976 -15.36465 -15.00586 -14.82097 -14.65209 -14.40049 -14.25259 -13.98022 -13.88055 -13.76288 -13.46238 -13.14200 -13.02927 -12.80243 -12.57850 -12.50988 -12.33308 -12.01351 -11.87443 -11.73692 -11.71962 -11.33376 -11.28624 -11.21784 -10.94337 -10.72920 -9.98926 -9.72628 -9.27356 -9.12399 -8.40903 -5.35042 -1.04665 -0.05188 0.09253 0.54723 0.78140 1.57698 1.68244 1.69350 1.74759 1.82910 2.54943 2.71005 2.76225 3.13420 3.31451 3.39429 3.44064 3.60001 3.75744 3.84442 3.91815 3.98214 4.06764 4.08944 4.20667 4.28273 4.39484 4.49403 4.54219 4.61108 4.65201 4.66737 4.72797 4.79673 4.88948 4.89349 4.93576 5.00839 5.11729 5.13264 5.17030 5.31205 5.40573 5.58292 6.27124 6.46662 6.47093 6.85876 7.07789 7.98096 8.09230 9.10853 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.002024 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.762483 B =13828.305478 C =14718.896931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.097 3.903 3 N -0.507 5.507 4 C 0.095 3.905 5 C -0.078 4.078 6 C -0.058 4.058 7 C -0.130 4.130 8 C 0.566 3.434 9 O -0.581 6.581 10 N -0.609 5.609 11 C 0.081 3.919 12 C -0.112 4.112 13 C -0.098 4.098 14 H 0.078 0.922 15 C 0.169 3.831 16 N -0.760 5.760 17 C -0.333 4.333 18 H 0.071 0.929 19 C -0.109 4.109 20 N -0.977 5.977 21 Si 1.132 2.868 22 H -0.282 1.282 23 H -0.271 1.271 24 H -0.296 1.296 25 C 0.118 3.882 26 C -0.055 4.055 27 C -0.220 4.220 28 S 0.164 5.836 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.025 0.975 39 H 0.036 0.964 40 H 0.358 0.642 41 H 0.242 0.758 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.877 1.034 -4.107 35.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.186 4.186 3 N -0.223 5.223 4 C -0.027 4.027 5 C -0.099 4.099 6 C -0.080 4.080 7 C -0.136 4.136 8 C 0.357 3.643 9 O -0.462 6.462 10 N -0.341 5.341 11 C -0.040 4.040 12 C -0.150 4.150 13 C -0.118 4.118 14 H 0.097 0.903 15 C 0.042 3.958 16 N -0.405 5.405 17 C -0.464 4.464 18 H 0.089 0.911 19 C -0.300 4.300 20 N -0.625 5.625 21 Si 0.956 3.044 22 H -0.209 1.209 23 H -0.196 1.196 24 H -0.223 1.223 25 C -0.004 4.004 26 C -0.076 4.076 27 C -0.339 4.339 28 S 0.421 5.579 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.190 0.810 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -33.443 0.745 -4.042 33.695 hybrid contribution -0.301 1.642 0.223 1.684 sum -33.744 2.387 -3.820 34.043 Atomic orbital electron populations 1.20855 0.81804 1.06112 1.05938 1.27665 1.03688 0.90742 0.96498 1.66236 1.03944 1.32708 1.19370 1.19631 0.89742 0.92500 1.00839 1.20421 0.89550 0.99626 1.00301 1.20801 0.96339 0.95201 0.95658 1.19660 0.91172 0.95087 1.07691 1.18211 0.88752 0.81025 0.76269 1.90795 1.53406 1.49891 1.52154 1.48458 1.08932 1.05880 1.70839 1.22922 0.92967 0.84568 1.03540 1.22763 0.91419 0.96852 1.03963 1.22436 0.96349 0.92406 1.00591 0.90348 1.20709 0.83244 0.96311 0.95493 1.42659 1.03107 1.44719 1.50014 1.20438 0.87882 1.16860 1.21243 0.91080 1.27285 1.04372 0.99941 0.98406 1.70969 1.29080 1.27994 1.34486 0.82578 0.71537 0.74426 0.75832 1.20909 1.19580 1.22290 1.22143 0.82709 0.94960 1.00607 1.22164 0.88619 1.02759 0.94061 1.24038 0.99995 0.97409 1.12414 1.83752 0.92867 1.08583 1.72687 0.87211 0.87075 0.88559 0.82712 0.83951 0.88104 0.87685 0.88665 0.86479 0.95680 0.94608 0.81023 0.94771 0.93710 0.91779 0.79267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 10.44 71.23 0.74 0.36 16 2 C 0.10 1.27 7.29 88.66 0.65 1.92 16 3 N -0.51 -10.01 10.56 -182.21 -1.92 -11.94 16 4 C 0.09 2.03 7.00 39.95 0.28 2.31 16 5 C -0.08 -1.64 10.03 22.43 0.23 -1.41 16 6 C -0.06 -1.37 9.49 22.17 0.21 -1.16 16 7 C -0.13 -3.21 5.87 -20.11 -0.12 -3.32 16 8 C 0.57 17.87 7.80 86.71 0.68 18.55 16 9 O -0.58 -23.73 16.59 -4.01 -0.07 -23.79 16 10 N -0.61 -16.79 3.33 -830.07 -2.76 -19.55 16 11 C 0.08 1.34 4.87 86.74 0.42 1.76 16 12 C -0.11 -1.93 6.42 31.79 0.20 -1.73 16 13 C -0.10 -2.85 3.07 -9.40 -0.03 -2.88 16 14 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 15 C 0.17 6.34 5.71 86.38 0.49 6.83 16 16 N -0.76 -38.65 5.49 -343.44 -1.89 -40.54 16 17 C -0.33 -18.92 9.99 84.03 0.84 -18.08 16 18 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 19 C -0.11 -6.48 5.50 84.86 0.47 -6.02 16 20 N -0.98 -63.17 13.70 21.65 0.30 -62.88 16 21 Si 1.13 52.82 29.92 68.60 2.05 54.88 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 25 C 0.12 3.97 6.26 86.85 0.54 4.51 16 26 C -0.05 -1.03 8.64 22.66 0.20 -0.83 16 27 C -0.22 -4.08 6.54 22.90 0.15 -3.93 16 28 S 0.16 1.92 23.11 -56.49 -1.31 0.61 16 29 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.14 3.42 7.65 -2.91 -0.02 3.39 16 34 H 0.10 1.26 6.73 -2.39 -0.02 1.24 16 35 H 0.11 1.25 6.74 -2.38 -0.02 1.23 16 36 H 0.09 1.48 8.04 -2.38 -0.02 1.46 16 37 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.03 0.95 8.03 -2.39 -0.02 0.93 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.36 19.32 6.46 -92.70 -0.60 18.72 16 41 H 0.24 15.72 6.77 -92.70 -0.63 15.10 16 42 H 0.04 1.83 7.99 -2.39 -0.02 1.81 16 43 H 0.06 2.25 7.95 -2.39 -0.02 2.23 16 44 H 0.19 2.54 2.73 -8.55 -0.02 2.52 16 Total: -1.00 -82.50 372.77 0.93 -81.57 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.58 Total: 24.77 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.95 Total: -3.13 kcal Atomic # 7 Polarization: -128.63 SS G_CDS: -6.27 Total: -134.90 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.07 Total: -23.79 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 2.05 Total: 54.88 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.31 Total: 0.61 kcal Total: -82.50 0.93 -81.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662706473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.021 kcal (2) G-P(sol) polarization free energy of solvation -82.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds