Wall clock time and date at job start Sat Apr 11 2020 07:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 N 1.46499 * 109.47267 * 299.99913 * 3 2 1 5 5 C 1.36936 * 120.00006 * 180.02562 * 4 3 2 6 6 H 1.08005 * 120.00161 * 359.97438 * 5 4 3 7 7 C 1.38815 * 119.99787 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00372 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99670 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47615 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47255 * 120.00188 * 9 7 5 12 12 H 1.48502 * 109.47089 * 239.99792 * 9 7 5 13 13 N 1.46500 * 109.47487 * 239.99911 * 2 1 3 14 14 C 1.34771 * 120.00404 * 174.06598 * 13 2 1 15 15 O 1.21613 * 119.99920 * 355.56547 * 14 13 2 16 16 C 1.47382 * 120.00316 * 175.56868 * 14 13 2 17 17 N 1.29682 * 121.82539 * 359.97438 * 16 14 13 18 18 S 1.56010 * 111.73807 * 179.47330 * 17 16 14 19 19 C 1.76250 * 97.56138 * 0.53960 * 18 17 16 20 20 C 1.38700 * 134.18826 * 179.36685 * 19 18 17 21 21 C 1.36794 * 119.63031 * 180.02562 * 20 19 18 22 22 C 1.38902 * 120.30946 * 359.97438 * 21 20 19 23 23 C 1.36332 * 121.03517 * 0.02562 * 22 21 20 24 24 C 1.40418 * 119.95855 * 0.27270 * 23 22 21 25 25 C 1.52998 * 109.46911 * 120.00022 * 2 1 3 26 26 C 1.53002 * 117.50248 * 122.15898 * 25 2 1 27 27 C 1.52997 * 117.49986 * 53.49826 * 25 2 1 28 28 H 1.08997 * 109.47500 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47421 * 300.00723 * 1 2 3 30 30 H 1.09007 * 109.46575 * 59.99803 * 1 2 3 31 31 H 1.08998 * 109.47435 * 59.99873 * 3 2 1 32 32 H 1.09002 * 109.47073 * 179.97438 * 3 2 1 33 33 H 0.96998 * 119.99962 * 359.97438 * 4 3 2 34 34 H 0.96994 * 120.00253 * 180.02562 * 8 7 5 35 35 H 0.97002 * 119.99654 * 354.06270 * 13 2 1 36 36 H 1.08008 * 120.18060 * 0.02562 * 20 19 18 37 37 H 1.08004 * 119.84579 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.48786 * 180.02562 * 22 21 20 39 39 H 1.07993 * 120.02446 * 180.02562 * 23 22 21 40 40 H 1.09000 * 115.55132 * 267.82947 * 25 2 1 41 41 H 1.09006 * 117.49569 * 0.02562 * 26 25 2 42 42 H 1.08995 * 117.50057 * 145.02124 * 26 25 2 43 43 H 1.09000 * 117.50349 * 214.98008 * 27 25 2 44 44 H 1.09004 * 117.49962 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8830 3.4439 -1.4131 6 1 2.5040 3.9688 -0.7022 7 6 1.4208 4.0982 -2.5468 8 7 0.6645 3.4585 -3.4135 9 14 1.8721 5.8865 -2.8423 10 1 2.7249 6.3726 -1.7280 11 1 2.6152 6.0045 -4.1227 12 1 0.6346 6.7045 -2.9111 13 7 2.0184 -0.6906 -1.1961 14 6 3.3375 -0.7103 -1.4715 15 8 4.1140 -0.0877 -0.7726 16 6 3.8392 -1.4863 -2.6197 17 7 3.0432 -2.1631 -3.3879 18 16 3.8196 -2.8826 -4.5340 19 6 5.4381 -2.3423 -4.0924 20 6 6.7051 -2.5580 -4.6139 21 6 7.7899 -1.9756 -4.0178 22 6 7.6264 -1.1718 -2.8968 23 6 6.3903 -0.9464 -2.3677 24 6 5.2586 -1.5357 -2.9540 25 6 2.0399 -0.7213 1.2492 26 6 2.9565 -1.9289 1.0432 27 6 1.5143 -2.1336 1.5136 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4424 0.0005 33 1 0.9944 1.6616 -1.8349 34 1 0.3418 3.9155 -4.2058 35 1 1.3923 -1.1338 -1.7899 36 1 6.8344 -3.1823 -5.4857 37 1 8.7781 -2.1408 -4.4212 38 1 8.4920 -0.7182 -2.4371 39 1 6.2819 -0.3183 -1.4960 40 1 2.2317 -0.0856 2.1137 41 1 3.1965 -2.2093 0.0175 42 1 3.7509 -2.0880 1.7722 43 1 1.3606 -2.4273 2.5520 44 1 0.8055 -2.5491 0.7973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665999042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:31 Heat of formation + Delta-G solvation = 53.404351 kcal Electronic energy + Delta-G solvation = -28471.112572 eV Core-core repulsion = 24708.812833 eV Total energy + Delta-G solvation = -3762.299739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01320 -40.75327 -38.59146 -37.76432 -36.60758 -34.94673 -33.20393 -32.09138 -31.66140 -31.18377 -27.76468 -27.10185 -25.53434 -24.12723 -23.57481 -23.16477 -22.89547 -21.56299 -20.46134 -19.63930 -19.28481 -18.63426 -17.51638 -17.19460 -16.89623 -16.32201 -16.20668 -16.19230 -15.87444 -15.46187 -15.15526 -15.03783 -14.94633 -14.72826 -14.57014 -13.59677 -13.57311 -13.34944 -13.31132 -13.11169 -13.02079 -12.85383 -12.67686 -12.46230 -12.33532 -12.31993 -12.12711 -12.01920 -11.79680 -11.72961 -11.26602 -11.14972 -10.98218 -10.84421 -10.52402 -10.08945 -10.02090 -8.93339 -8.89560 -7.95923 -5.21908 -0.74781 0.06457 0.29156 0.60953 0.65845 1.42068 1.43197 1.53482 2.02057 2.15033 2.53543 2.66995 2.90608 3.24598 3.37587 3.58515 3.61057 3.87597 3.95948 3.98784 4.07492 4.14410 4.31744 4.33357 4.33903 4.40950 4.51709 4.52716 4.75122 4.79778 4.83419 4.90075 4.91871 4.97320 5.02899 5.15635 5.17787 5.25855 5.30299 5.31053 5.37034 5.46548 5.47672 5.66621 5.84969 6.26606 6.52588 7.18430 7.33264 8.09584 8.35567 9.27821 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.004504 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.544613 B = 6215.603820 C = 7874.114106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.204 3.796 3 C 0.139 3.861 4 N -0.732 5.732 5 C -0.236 4.236 6 H 0.067 0.933 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.295 1.295 12 H -0.289 1.289 13 N -0.692 5.692 14 C 0.593 3.407 15 O -0.535 6.535 16 C 0.067 3.933 17 N -0.510 5.510 18 S 0.425 5.575 19 C -0.213 4.213 20 C -0.073 4.073 21 C -0.079 4.079 22 C -0.113 4.113 23 C -0.070 4.070 24 C -0.115 4.115 25 C -0.158 4.158 26 C -0.173 4.173 27 C -0.149 4.149 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.023 0.977 32 H 0.038 0.962 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.406 0.594 36 H 0.169 0.831 37 H 0.178 0.822 38 H 0.159 0.841 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.961 -19.714 1.224 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.119 3.881 3 C 0.012 3.988 4 N -0.374 5.374 5 C -0.369 4.369 6 H 0.085 0.915 7 C -0.266 4.266 8 N -0.620 5.620 9 Si 0.799 3.201 10 H -0.194 1.194 11 H -0.223 1.223 12 H -0.216 1.216 13 N -0.343 5.343 14 C 0.376 3.624 15 O -0.412 6.412 16 C -0.121 4.121 17 N -0.337 5.337 18 S 0.585 5.415 19 C -0.334 4.334 20 C -0.095 4.095 21 C -0.102 4.102 22 C -0.132 4.132 23 C -0.092 4.092 24 C -0.125 4.125 25 C -0.178 4.178 26 C -0.210 4.210 27 C -0.186 4.186 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.241 0.759 36 H 0.187 0.813 37 H 0.195 0.805 38 H 0.176 0.824 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.133 0.867 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.802 -20.153 0.720 22.422 hybrid contribution 0.523 2.060 0.247 2.140 sum 10.325 -18.093 0.967 20.854 Atomic orbital electron populations 1.21922 0.91667 1.03068 1.03028 1.20041 0.94735 0.90248 0.83119 1.21260 0.98097 0.90355 0.89130 1.42366 1.60986 1.09865 1.24229 1.19604 1.24177 0.88941 1.04135 0.91542 1.25462 1.01404 1.02296 0.97474 1.69812 1.41229 1.37434 1.13506 0.85125 0.77234 0.80432 0.77339 1.19409 1.22269 1.21558 1.45804 1.06646 1.55054 1.26817 1.17146 0.83086 0.79802 0.82395 1.90695 1.56768 1.43333 1.50382 1.22054 0.90241 1.01166 0.98599 1.71190 1.37310 1.14766 1.10460 1.80906 0.88713 1.45696 1.26181 1.24566 1.03159 1.05021 1.00669 1.20461 0.87955 1.00352 1.00748 1.21566 1.00396 0.94151 0.94095 1.21293 0.96729 0.98368 0.96830 1.20880 0.91102 0.97508 0.99737 1.19763 0.92280 1.02301 0.98174 1.22463 1.05752 0.91246 0.98302 1.22887 0.94436 1.02284 1.01416 1.23057 0.95793 0.96662 1.03099 0.89774 0.90038 0.93597 0.95961 0.94454 0.79326 0.94171 0.75861 0.81306 0.80511 0.82386 0.85703 0.86953 0.90978 0.88710 0.86653 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 8.18 71.98 0.59 -3.75 16 2 C 0.20 7.14 0.55 3.60 0.00 7.14 16 3 C 0.14 6.26 4.81 86.38 0.42 6.67 16 4 N -0.73 -39.65 5.17 -343.45 -1.78 -41.43 16 5 C -0.24 -14.16 9.99 84.03 0.84 -13.32 16 6 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 7 C -0.07 -4.50 5.50 84.86 0.47 -4.03 16 8 N -0.97 -61.53 13.06 21.65 0.28 -61.25 16 9 Si 0.97 48.70 29.55 68.60 2.03 50.73 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 12 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 13 N -0.69 -24.90 4.16 -426.20 -1.78 -26.68 16 14 C 0.59 23.21 4.84 86.65 0.42 23.63 16 15 O -0.54 -23.10 11.34 -4.07 -0.05 -23.15 16 16 C 0.07 2.39 6.82 43.86 0.30 2.69 16 17 N -0.51 -16.46 10.50 -64.56 -0.68 -17.14 16 18 S 0.42 10.35 23.36 -56.49 -1.32 9.03 16 19 C -0.21 -5.34 6.73 22.97 0.15 -5.19 16 20 C -0.07 -1.26 10.03 22.04 0.22 -1.04 16 21 C -0.08 -1.18 10.00 22.09 0.22 -0.96 16 22 C -0.11 -2.25 9.93 21.98 0.22 -2.04 16 23 C -0.07 -2.04 9.57 22.36 0.21 -1.83 16 24 C -0.11 -3.68 6.10 -20.17 -0.12 -3.80 16 25 C -0.16 -4.62 4.89 -10.79 -0.05 -4.67 16 26 C -0.17 -4.84 8.62 30.62 0.26 -4.58 16 27 C -0.15 -3.36 9.68 30.62 0.30 -3.06 16 28 H 0.08 2.07 6.91 -2.39 -0.02 2.05 16 29 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.04 1.70 6.86 -2.38 -0.02 1.68 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 1.88 5.63 -2.39 -0.01 1.87 16 33 H 0.37 21.17 6.35 -92.71 -0.59 20.58 16 34 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.41 13.86 7.93 -92.71 -0.74 13.13 16 36 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 38 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.13 4.15 6.64 -2.91 -0.02 4.13 16 40 H 0.11 3.22 8.06 -2.39 -0.02 3.20 16 41 H 0.07 2.30 5.21 -2.38 -0.01 2.29 16 42 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.10 2.09 7.20 -2.38 -0.02 2.08 16 Total: -1.00 -76.57 368.38 0.90 -75.67 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -0.26 Total: 42.32 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 4.44 Total: -8.12 kcal Atomic # 7 Polarization: -142.54 SS G_CDS: -3.95 Total: -146.49 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Atomic # 16 Polarization: 10.35 SS G_CDS: -1.32 Total: 9.03 kcal Total: -76.57 0.90 -75.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665999042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.073 kcal (2) G-P(sol) polarization free energy of solvation -76.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds