Wall clock time and date at job start Sat Apr 11 2020 07:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29508 * 121.53394 * 2 1 4 4 S 1.69487 * 107.84738 * 180.21739 * 3 2 1 5 5 C 1.72012 * 96.02237 * 359.74332 * 4 3 2 6 6 C 1.50705 * 127.31851 * 179.97438 * 5 4 3 7 7 C 1.37900 * 105.36835 * 0.02562 * 5 4 3 8 8 C 1.47347 * 123.08657 * 179.97438 * 7 5 4 9 9 O 1.21614 * 119.99452 * 90.00105 * 8 7 5 10 10 N 1.34770 * 119.99880 * 270.00128 * 8 7 5 11 11 C 1.46505 * 119.99664 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.47014 * 179.97438 * 11 10 8 13 13 C 1.38233 * 120.00109 * 269.72616 * 12 11 10 14 14 C 1.38238 * 119.99754 * 179.76611 * 13 12 11 15 15 C 1.38234 * 120.00038 * 0.48818 * 14 13 12 16 16 C 1.50696 * 120.00185 * 179.77054 * 15 14 13 17 17 N 1.46499 * 109.47128 * 270.01863 * 16 15 14 18 18 C 1.36936 * 120.00426 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99857 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00061 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00176 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00007 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47469 * 89.99603 * 22 20 18 24 24 H 1.48496 * 109.47226 * 210.00022 * 22 20 18 25 25 H 1.48507 * 109.46894 * 329.99975 * 22 20 18 26 26 C 1.38238 * 120.00047 * 359.78460 * 15 14 13 27 27 C 1.38235 * 120.00108 * 359.96171 * 26 15 14 28 28 H 1.09003 * 109.47006 * 270.24493 * 1 2 3 29 29 H 1.08995 * 109.47275 * 30.24951 * 1 2 3 30 30 H 1.09002 * 109.47517 * 150.25225 * 1 2 3 31 31 H 1.09000 * 109.47516 * 270.03420 * 6 5 4 32 32 H 1.09001 * 109.46599 * 30.02598 * 6 5 4 33 33 H 1.09001 * 109.47597 * 150.02497 * 6 5 4 34 34 H 0.97000 * 120.00231 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.46864 * 60.00469 * 11 10 8 36 36 H 1.09000 * 109.47078 * 299.99722 * 11 10 8 37 37 H 1.08004 * 119.99934 * 0.02562 * 13 12 11 38 38 H 1.07999 * 119.99931 * 180.25459 * 14 13 12 39 39 H 1.09000 * 109.47119 * 30.01506 * 16 15 14 40 40 H 1.09000 * 109.47160 * 150.02459 * 16 15 14 41 41 H 0.97007 * 119.99986 * 359.97438 * 17 16 15 42 42 H 0.97001 * 120.00314 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.00559 * 179.97438 * 26 15 14 44 44 H 1.07999 * 120.00165 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1038 0.0000 4 16 3.8311 0.7028 -0.0061 5 6 3.6017 -1.0019 -0.0011 6 6 4.6676 -2.0672 -0.0037 7 6 2.2351 -1.1868 0.0046 8 6 1.6035 -2.5180 0.0097 9 8 1.3470 -3.0652 1.0651 10 7 1.3102 -3.1291 -1.1551 11 6 0.6817 -4.4525 -1.1499 12 6 0.4603 -4.9090 -2.5690 13 6 -0.7248 -4.6097 -3.2145 14 6 -0.9258 -5.0243 -4.5179 15 6 0.0542 -5.7469 -5.1722 16 6 -0.1670 -6.2033 -6.5913 17 7 -0.7954 -7.5266 -6.5863 18 6 -1.0944 -8.1472 -7.7698 19 1 -0.8665 -7.6612 -8.7069 20 6 -1.6904 -9.4008 -7.7649 21 7 -1.9677 -9.9933 -6.6228 22 14 -2.0976 -10.2477 -9.3794 23 1 -0.9411 -11.0731 -9.8110 24 1 -3.2862 -11.1186 -9.1955 25 1 -2.3893 -9.2243 -10.4153 26 6 1.2371 -6.0511 -4.5248 27 6 1.4403 -5.6320 -3.2233 28 1 -0.3633 0.0044 1.0277 29 1 -0.3633 0.8877 -0.5177 30 1 -0.3634 -0.8922 -0.5099 31 1 4.9202 -2.3261 -1.0319 32 1 5.5560 -1.6935 0.5055 33 1 4.2979 -2.9526 0.5135 34 1 1.5151 -2.6928 -1.9968 35 1 -0.2763 -4.3978 -0.6327 36 1 1.3316 -5.1614 -0.6371 37 1 -1.4920 -4.0483 -2.7020 38 1 -1.8501 -4.7869 -5.0236 39 1 -0.8171 -5.4943 -7.1038 40 1 0.7908 -6.2580 -7.1088 41 1 -0.9998 -7.9633 -5.7445 42 1 -2.3845 -10.8692 -6.6194 43 1 2.0027 -6.6160 -5.0359 44 1 2.3643 -5.8700 -2.7173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666350528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:38 Heat of formation + Delta-G solvation = 30.258365 kcal Electronic energy + Delta-G solvation = -26004.660828 eV Core-core repulsion = 22241.357404 eV Total energy + Delta-G solvation = -3763.303424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.72472 -39.40274 -38.44950 -35.60667 -34.38536 -33.77504 -32.14728 -30.77514 -30.48896 -29.95838 -28.69284 -26.99809 -24.62735 -23.25277 -22.54840 -22.37412 -21.58811 -20.55467 -19.67630 -18.65309 -17.35819 -17.23510 -16.58884 -15.72090 -15.59701 -15.18686 -15.01591 -14.77675 -14.65777 -14.56694 -13.98526 -13.88976 -13.72735 -13.42058 -13.27262 -13.21307 -13.06264 -12.81617 -12.69808 -12.60710 -12.40031 -12.10363 -11.90345 -11.62411 -11.18051 -11.10891 -10.90092 -10.78090 -10.64866 -10.33149 -10.09887 -9.83050 -9.81246 -9.41274 -9.09909 -8.94192 -8.74453 -8.49938 -6.98560 -5.80290 -3.10449 0.09569 0.88392 1.27788 1.34743 1.58683 1.72592 2.20952 3.02331 3.40961 3.45953 3.47912 3.86120 3.94918 4.39836 4.42846 4.58051 4.63213 4.71486 4.84975 4.88652 4.92675 5.03927 5.11832 5.12906 5.22862 5.26544 5.32632 5.41395 5.50737 5.52809 5.62385 5.68844 5.79290 6.03605 6.10037 6.11267 6.14144 6.15403 6.43700 6.53817 6.57402 6.63097 7.05107 7.12605 7.17215 7.65198 7.81261 8.37308 9.48939 10.04529 10.40167 11.42073 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.024099 B = 0.001765 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.609994 B =15861.642154 C =15919.833759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.155 3.845 3 N -0.466 5.466 4 S 0.282 5.718 5 C -0.133 4.133 6 C -0.089 4.089 7 C -0.218 4.218 8 C 0.590 3.410 9 O -0.526 6.526 10 N -0.713 5.713 11 C 0.165 3.835 12 C -0.126 4.126 13 C -0.102 4.102 14 C -0.106 4.106 15 C -0.062 4.062 16 C 0.184 3.816 17 N -0.727 5.727 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.106 4.106 27 C -0.103 4.103 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.404 0.596 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.029 0.971 40 H 0.028 0.972 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.124 0.876 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.073 21.251 14.878 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.023 4.023 3 N -0.287 5.287 4 S 0.438 5.562 5 C -0.263 4.263 6 C -0.147 4.147 7 C -0.238 4.238 8 C 0.372 3.628 9 O -0.402 6.402 10 N -0.364 5.364 11 C 0.043 3.957 12 C -0.127 4.127 13 C -0.121 4.121 14 C -0.125 4.125 15 C -0.063 4.063 16 C 0.057 3.943 17 N -0.371 5.371 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.125 4.125 27 C -0.122 4.122 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.239 0.761 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.142 0.858 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.729 22.891 15.460 30.414 hybrid contribution -1.075 -2.180 -0.991 2.625 sum 11.654 20.711 14.469 27.822 Atomic orbital electron populations 1.20665 0.85962 1.04289 1.04299 1.21282 0.99002 0.86846 0.95202 1.76398 1.00247 1.25919 1.26138 1.84062 1.10448 0.95013 1.66706 1.26113 0.97195 1.02835 1.00185 1.20449 0.94860 0.95308 1.04097 1.20179 0.92540 0.95762 1.15345 1.17342 0.77793 0.83569 0.84063 1.90841 1.52750 1.65656 1.31001 1.46179 1.62086 1.19766 1.08381 1.20234 0.98695 0.83064 0.93734 1.19642 0.95716 1.02209 0.95118 1.20992 0.96485 0.99805 0.94820 1.21131 0.98944 0.97936 0.94449 1.20402 0.93324 0.95078 0.97507 1.19711 0.96530 0.88930 0.89148 1.42336 1.72802 1.15293 1.06676 1.19233 1.33184 0.99011 0.85990 0.91056 1.24772 1.01628 0.97576 0.96916 1.69672 1.48127 1.16254 1.23856 0.86164 0.77614 0.79389 0.82841 1.21664 1.21724 1.20711 1.21125 0.97685 0.99155 0.94519 1.20983 0.98419 0.97952 0.94797 0.89265 0.89559 0.90008 0.88993 0.89748 0.89598 0.76088 0.90384 0.90453 0.86261 0.85771 0.95374 0.95398 0.78045 0.93428 0.85798 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 9.96 36.00 0.36 -0.32 16 2 C 0.15 1.47 6.75 -83.20 -0.56 0.91 16 3 N -0.47 -4.72 11.97 32.50 0.39 -4.33 16 4 S 0.28 2.20 23.69 -107.50 -2.55 -0.34 16 5 C -0.13 -1.05 6.67 -34.43 -0.23 -1.28 16 6 C -0.09 -0.49 10.19 36.01 0.37 -0.12 16 7 C -0.22 -2.06 5.61 -105.94 -0.59 -2.65 16 8 C 0.59 6.18 5.77 -12.56 -0.07 6.11 16 9 O -0.53 -7.41 17.11 5.27 0.09 -7.32 16 10 N -0.71 -6.25 5.54 -62.58 -0.35 -6.59 16 11 C 0.17 1.62 5.80 -5.19 -0.03 1.59 16 12 C -0.13 -1.42 5.25 -104.62 -0.55 -1.97 16 13 C -0.10 -1.24 9.70 -39.58 -0.38 -1.62 16 14 C -0.11 -1.55 9.70 -39.58 -0.38 -1.93 16 15 C -0.06 -1.02 5.25 -104.63 -0.55 -1.57 16 16 C 0.18 3.62 6.38 -5.20 -0.03 3.59 16 17 N -0.73 -18.25 5.59 -61.09 -0.34 -18.59 16 18 C -0.24 -6.73 9.99 -15.06 -0.15 -6.89 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 22 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 C -0.11 -1.55 9.70 -39.58 -0.38 -1.93 16 27 C -0.10 -1.24 9.70 -39.58 -0.38 -1.62 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.57 7.39 -51.93 -0.38 0.19 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.56 7.85 -51.93 -0.41 0.15 16 34 H 0.40 3.02 8.45 -40.82 -0.34 2.67 16 35 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.39 10.35 7.66 -40.82 -0.31 10.04 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -33.31 394.40 -10.84 -44.16 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.06 Total: 7.44 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.68 Total: -10.17 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.42 Total: -56.86 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.09 Total: -7.32 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.55 Total: -0.34 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.31 -10.84 -44.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666350528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.415 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds