Wall clock time and date at job start Sat Apr 11 2020 07:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38905 * 119.48109 * 2 1 4 4 C 1.36812 * 120.30667 * 179.97438 * 3 2 1 5 5 C 1.38703 * 119.62711 * 0.02562 * 4 3 2 6 6 S 1.76255 * 134.18673 * 179.97438 * 5 4 3 7 7 N 1.55997 * 97.56159 * 180.02562 * 6 5 4 8 8 C 1.29688 * 111.74240 * 359.97438 * 7 6 5 9 9 C 1.47384 * 121.82777 * 179.97438 * 8 7 6 10 10 O 1.21619 * 119.99887 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00094 * 0.03634 * 9 8 7 12 12 C 1.46500 * 120.00196 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46967 * 325.00170 * 12 11 9 14 14 C 1.52997 * 109.47170 * 204.99986 * 12 11 9 15 15 N 1.46505 * 109.47212 * 54.99826 * 14 12 11 16 16 C 1.36936 * 119.99992 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99834 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00093 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00145 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00180 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47586 * 89.99558 * 20 18 16 22 22 H 1.48505 * 109.47293 * 210.00502 * 20 18 16 23 23 H 1.48505 * 109.46772 * 329.99807 * 20 18 16 24 24 C 1.52994 * 109.46849 * 84.99779 * 12 11 9 25 25 C 1.52999 * 117.50412 * 8.74867 * 24 12 11 26 26 C 1.53002 * 117.50104 * 300.08575 * 24 12 11 27 27 C 1.40675 * 120.66460 * 0.28709 * 5 4 3 28 28 C 1.36338 * 119.48306 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47304 * 89.99744 * 1 2 3 30 30 H 1.09007 * 109.46901 * 209.99760 * 1 2 3 31 31 H 1.08998 * 109.46978 * 329.99858 * 1 2 3 32 32 H 1.07992 * 119.85110 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.18500 * 180.02562 * 4 3 2 34 34 H 0.96998 * 119.99752 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47153 * 294.99818 * 14 12 11 36 36 H 1.09001 * 109.46832 * 175.00009 * 14 12 11 37 37 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 38 38 H 0.97010 * 119.99864 * 180.02562 * 19 18 16 39 39 H 1.09003 * 115.54830 * 154.41823 * 24 12 11 40 40 H 1.09003 * 117.49323 * 359.97438 * 25 24 12 41 41 H 1.09003 * 117.50071 * 145.01968 * 25 24 12 42 42 H 1.09000 * 117.50257 * 214.97832 * 26 24 12 43 43 H 1.09002 * 117.49965 * 359.97438 * 26 24 12 44 44 H 1.07994 * 120.01712 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2092 0.0000 4 6 3.5586 1.2289 0.0005 5 6 4.2616 0.0332 0.0005 6 16 5.9737 -0.3852 0.0005 7 7 5.8060 -1.9362 -0.0002 8 6 4.5567 -2.2843 0.0001 9 6 4.1441 -3.6992 -0.0010 10 8 2.9627 -3.9881 -0.0012 11 7 5.0760 -4.6729 -0.0016 12 6 4.6658 -6.0793 -0.0021 13 1 3.7561 -6.1927 0.5874 14 6 5.7782 -6.9352 0.6069 15 7 6.1134 -6.4249 1.9387 16 6 7.0882 -7.0364 2.6809 17 1 7.6104 -7.8947 2.2843 18 6 7.4054 -6.5533 3.9429 19 7 8.3428 -7.1408 4.6560 20 14 6.5019 -5.0693 4.6292 21 1 5.3015 -5.5226 5.3766 22 1 7.4015 -4.3215 5.5439 23 1 6.0845 -4.1839 3.5124 24 6 4.4021 -6.5330 -1.4392 25 6 4.7942 -5.5750 -2.5659 26 6 3.3178 -5.7937 -2.2258 27 6 3.5821 -1.1985 -0.0061 28 6 2.1780 -1.1868 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6398 2.1381 0.0004 33 1 4.0881 2.1701 0.0009 34 1 6.0182 -4.4425 -0.0017 35 1 6.6607 -6.8919 -0.0314 36 1 5.4389 -7.9678 0.6882 37 1 5.6442 -5.6543 2.2950 38 1 8.5642 -6.8033 5.5382 39 1 4.5179 -7.6011 -1.6238 40 1 5.2397 -4.6212 -2.2831 41 1 5.1676 -6.0127 -3.4917 42 1 2.7205 -6.3752 -2.9281 43 1 2.7920 -4.9843 -1.7193 44 1 1.6299 -2.1173 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670506816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:45 Heat of formation + Delta-G solvation = 62.813741 kcal Electronic energy + Delta-G solvation = -27776.478881 eV Core-core repulsion = 24014.587164 eV Total energy + Delta-G solvation = -3761.891717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.88814 -39.68941 -37.67681 -36.87382 -35.08382 -33.44518 -32.83395 -31.42637 -31.00987 -28.84847 -27.33806 -26.04894 -24.02484 -23.27996 -22.27586 -21.79041 -21.30867 -20.45237 -19.82257 -18.68943 -17.97849 -17.40131 -16.54223 -16.24038 -15.75941 -15.57264 -15.21880 -14.85943 -14.58068 -14.26729 -14.12920 -13.88413 -13.71950 -13.64810 -13.17635 -12.78892 -12.58454 -12.30489 -12.23382 -12.08137 -11.93791 -11.86147 -11.63126 -11.35848 -11.30478 -11.05826 -10.91714 -10.87849 -10.26880 -10.19749 -9.94097 -9.85594 -9.73599 -9.59647 -9.21622 -8.96110 -8.86055 -8.06014 -7.27544 -5.79124 -3.15157 0.14609 0.80148 1.11461 1.43811 1.57742 2.99411 3.12451 3.36845 3.40997 3.41388 3.44453 3.96743 4.06483 4.39847 4.51626 4.57751 4.74604 4.81756 4.90505 5.02542 5.09245 5.12021 5.12883 5.28433 5.32421 5.39839 5.49917 5.57387 5.64989 5.69013 5.74469 5.77638 5.82643 5.83756 5.85812 6.04588 6.07996 6.21056 6.25714 6.35894 6.42336 6.53018 6.56940 6.75135 7.60545 7.95772 8.19470 8.39510 9.17917 9.90424 10.09339 11.39048 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009964 B = 0.003955 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.543321 B = 7077.639954 C = 8385.172214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.090 4.090 4 C -0.070 4.070 5 C -0.208 4.208 6 S 0.390 5.610 7 N -0.481 5.481 8 C 0.089 3.911 9 C 0.589 3.411 10 O -0.527 6.527 11 N -0.690 5.690 12 C 0.163 3.837 13 H 0.095 0.905 14 C 0.153 3.847 15 N -0.755 5.755 16 C -0.245 4.245 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.932 5.932 20 Si 0.880 3.120 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.279 1.279 24 C -0.159 4.159 25 C -0.178 4.178 26 C -0.186 4.186 27 C -0.081 4.081 28 C -0.044 4.044 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.414 0.586 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.417 17.829 -15.083 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.113 4.113 4 C -0.092 4.092 5 C -0.329 4.329 6 S 0.550 5.450 7 N -0.307 5.307 8 C -0.100 4.100 9 C 0.371 3.629 10 O -0.404 6.404 11 N -0.341 5.341 12 C 0.058 3.942 13 H 0.113 0.887 14 C 0.025 3.975 15 N -0.401 5.401 16 C -0.374 4.374 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.580 5.580 20 Si 0.711 3.289 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.179 4.179 25 C -0.215 4.215 26 C -0.223 4.223 27 C -0.092 4.092 28 C -0.066 4.066 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.251 0.749 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.195 0.805 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.133 0.867 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.722 17.579 -14.998 25.910 hybrid contribution -1.633 0.713 0.666 1.902 sum -13.354 18.292 -14.332 26.802 Atomic orbital electron populations 1.20833 0.90331 1.03265 1.02691 1.19656 0.96796 0.92589 0.99841 1.20942 0.93633 0.97950 0.98798 1.19899 0.93762 0.95220 1.00270 1.24302 1.01772 0.97790 1.09001 1.81431 1.02224 0.94653 1.66714 1.71449 1.23629 1.16876 1.18751 1.21928 0.86528 0.96042 1.05481 1.17119 0.85886 0.82889 0.77047 1.90693 1.16668 1.82429 1.50604 1.45940 1.10459 1.05854 1.71879 1.20939 0.99863 0.79121 0.94237 0.88663 1.20903 0.94144 0.95494 0.86955 1.42699 1.45698 1.36283 1.15454 1.19032 1.10894 1.10669 0.96855 0.89021 1.24628 0.98495 0.98745 0.96870 1.69698 1.33463 1.42497 1.12315 0.86613 0.79539 0.83874 0.78903 1.21023 1.21643 1.20512 1.22659 1.04818 0.98245 0.92187 1.22907 0.98541 1.01161 0.98896 1.23338 0.91603 1.04212 1.03116 1.19555 0.95117 0.89841 1.04649 1.20684 0.90768 0.99156 0.95971 0.90830 0.90995 0.91282 0.84860 0.84803 0.74914 0.94650 0.93617 0.80469 0.93023 0.86806 0.89178 0.89268 0.89519 0.86695 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.98 36.01 0.36 -0.41 16 2 C -0.09 -0.83 5.84 -105.06 -0.61 -1.44 16 3 C -0.09 -0.74 9.63 -39.85 -0.38 -1.12 16 4 C -0.07 -0.63 10.03 -39.93 -0.40 -1.03 16 5 C -0.21 -2.46 6.73 -38.49 -0.26 -2.72 16 6 S 0.39 4.64 23.36 -107.50 -2.51 2.13 16 7 N -0.48 -7.32 10.49 28.24 0.30 -7.02 16 8 C 0.09 1.38 6.82 -81.99 -0.56 0.82 16 9 C 0.59 9.78 6.64 -12.54 -0.08 9.69 16 10 O -0.53 -9.08 12.04 5.26 0.06 -9.02 16 11 N -0.69 -11.38 3.05 -54.90 -0.17 -11.55 16 12 C 0.16 2.65 2.59 -67.94 -0.18 2.47 16 13 H 0.10 1.67 7.58 -51.93 -0.39 1.28 16 14 C 0.15 2.89 5.80 -4.04 -0.02 2.87 16 15 N -0.76 -18.02 5.24 -59.91 -0.31 -18.33 16 16 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 17 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 20 Si 0.88 22.93 27.74 -169.99 -4.71 18.22 16 21 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.28 -7.02 6.52 56.52 0.37 -6.65 16 24 C -0.16 -2.18 5.70 -90.62 -0.52 -2.70 16 25 C -0.18 -2.30 9.74 -26.69 -0.26 -2.56 16 26 C -0.19 -2.45 9.82 -26.69 -0.26 -2.71 16 27 C -0.08 -1.12 6.10 -105.09 -0.64 -1.76 16 28 C -0.04 -0.54 9.17 -39.45 -0.36 -0.90 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.41 7.02 8.04 -40.82 -0.33 6.69 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.36 8.74 5.20 -40.82 -0.21 8.53 16 38 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 39 H 0.11 1.41 8.11 -51.93 -0.42 0.99 16 40 H 0.09 1.25 6.67 -51.93 -0.35 0.91 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.12 1.72 5.01 -51.93 -0.26 1.46 16 44 H 0.15 1.89 6.64 -52.49 -0.35 1.54 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -33.12 373.77 -11.07 -44.19 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -5.70 Total: 12.95 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -4.43 Total: -8.45 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: 0.59 Total: -65.65 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.06 Total: -9.02 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.22 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -2.51 Total: 2.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.12 -11.07 -44.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670506816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.006 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds